mRNA_H-canaliculatus_F_contig1426.3346.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1426.3346.1
Unique NamemRNA_H-canaliculatus_F_contig1426.3346.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1426.3346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1426contigH-canaliculatus_F_contig1426:5760..6237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size478
Cds size363
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.6443577-UTR-H-canaliculatus_F_contig1426:5759..58741622929174.6443577-UTR-H-canaliculatus_F_contig1426:5759..5874Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1426 5760..5874 +
1696845706.5913506-UTR-H-canaliculatus_F_contig1426:5759..58741696845706.5913506-UTR-H-canaliculatus_F_contig1426:5759..5874Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1426 5760..5874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.6611223-CDS-H-canaliculatus_F_contig1426:5874..62371622929174.6611223-CDS-H-canaliculatus_F_contig1426:5874..6237Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1426 5875..6237 +
1696845706.6014504-CDS-H-canaliculatus_F_contig1426:5874..62371696845706.6014504-CDS-H-canaliculatus_F_contig1426:5874..6237Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1426 5875..6237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1426.3346.1prot_H-canaliculatus_F_contig1426.3346.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1426 5875..6237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1426.3346.1

>prot_H-canaliculatus_F_contig1426.3346.1 ID=prot_H-canaliculatus_F_contig1426.3346.1|Name=mRNA_H-canaliculatus_F_contig1426.3346.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
MLGVPDDAAPRVSVRQATPYSVLIRCKRAELPPRTHTCLACAEPVHNLCH
QLPRVSHDTHEAGLMCGEYKCRKAMSADKARLALPSGASGSPLSRECSIP
CSTGSNCRAKPGEISALCIH*
back to top

mRNA from alignment at H-canaliculatus_F_contig1426:5760..6237+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1426.3346.1 ID=mRNA_H-canaliculatus_F_contig1426.3346.1|Name=mRNA_H-canaliculatus_F_contig1426.3346.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=478bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1426:5760..6237+ (Hapterophycus canaliculatus Oshoro5f female)
ACCGTGTTTAAAAACAGAAGAAAAACAATAATTAATTCACCTCCCTCACA
CCTGACACCCAATAGCACCCGTACGTTTGGAGGTATCTCTCTGCTCACAA
AGAAGATTAAAGCACATGCTTGGCGTACCCGACGATGCCGCTCCTCGGGT
ATCAGTGCGCCAAGCTACCCCTTACTCCGTCCTGATTCGGTGTAAAAGGG
CGGAACTACCACCTCGCACACACACCTGCCTGGCATGTGCCGAGCCGGTG
CACAACCTCTGTCACCAACTCCCACGCGTCTCTCACGATACTCACGAAGC
CGGGTTGATGTGCGGCGAGTACAAGTGCCGCAAGGCGATGAGCGCCGACA
AGGCGCGGCTGGCCCTGCCTTCGGGCGCGAGCGGCTCTCCGCTGAGCAGG
GAGTGCTCTATCCCGTGCAGCACGGGCAGCAACTGCCGTGCAAAGCCCGG
CGAGATCTCTGCTCTCTGTATCCATTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1426:5760..6237+

>mRNA_H-canaliculatus_F_contig1426.3346.1 ID=mRNA_H-canaliculatus_F_contig1426.3346.1|Name=mRNA_H-canaliculatus_F_contig1426.3346.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1426:5760..6237+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTGGCGTACCCGACGATGCCGCTCCTCGGGTATCAGTGCGCCAAGC
TACCCCTTACTCCGTCCTGATTCGGTGTAAAAGGGCGGAACTACCACCTC
GCACACACACCTGCCTGGCATGTGCCGAGCCGGTGCACAACCTCTGTCAC
CAACTCCCACGCGTCTCTCACGATACTCACGAAGCCGGGTTGATGTGCGG
CGAGTACAAGTGCCGCAAGGCGATGAGCGCCGACAAGGCGCGGCTGGCCC
TGCCTTCGGGCGCGAGCGGCTCTCCGCTGAGCAGGGAGTGCTCTATCCCG
TGCAGCACGGGCAGCAACTGCCGTGCAAAGCCCGGCGAGATCTCTGCTCT
CTGTATCCATTGAATGCTTGGCGTACCCGACGATGCCGCTCCTCGGGTAT
CAGTGCGCCAAGCTACCCCTTACTCCGTCCTGATTCGGTGTAAAAGGGCG
GAACTACCACCTCGCACACACACCTGCCTGGCATGTGCCGAGCCGGTGCA
CAACCTCTGTCACCAACTCCCACGCGTCTCTCACGATACTCACGAAGCCG
GGTTGATGTGCGGCGAGTACAAGTGCCGCAAGGCGATGAGCGCCGACAAG
GCGCGGCTGGCCCTGCCTTCGGGCGCGAGCGGCTCTCCGCTGAGCAGGGA
GTGCTCTATCCCGTGCAGCACGGGCAGCAACTGCCGTGCAAAGCCCGGCG
AGATCTCTGCTCTCTGTATCCATTGA
back to top