mRNA_H-canaliculatus_F_contig14258.3345.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14258.3345.1
Unique NamemRNA_H-canaliculatus_F_contig14258.3345.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14258.3345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14258contigH-canaliculatus_F_contig14258:317..1294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size924
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14258.3345.1prot_H-canaliculatus_F_contig14258.3345.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14258 508..1218 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.5634236-UTR-H-canaliculatus_F_contig14258:316..5071622929174.5634236-UTR-H-canaliculatus_F_contig14258:316..507Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14258 317..507 +
1696845706.529794-UTR-H-canaliculatus_F_contig14258:316..5071696845706.529794-UTR-H-canaliculatus_F_contig14258:316..507Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14258 317..507 +
1622929174.6024463-UTR-H-canaliculatus_F_contig14258:1218..12941622929174.6024463-UTR-H-canaliculatus_F_contig14258:1218..1294Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14258 1219..1294 +
1696845706.5786846-UTR-H-canaliculatus_F_contig14258:1218..12941696845706.5786846-UTR-H-canaliculatus_F_contig14258:1218..1294Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14258 1219..1294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.5767035-CDS-H-canaliculatus_F_contig14258:507..9291622929174.5767035-CDS-H-canaliculatus_F_contig14258:507..929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14258 508..929 +
1696845706.5484626-CDS-H-canaliculatus_F_contig14258:507..9291696845706.5484626-CDS-H-canaliculatus_F_contig14258:507..929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14258 508..929 +
1622929174.591449-CDS-H-canaliculatus_F_contig14258:983..12181622929174.591449-CDS-H-canaliculatus_F_contig14258:983..1218Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14258 984..1218 +
1696845706.5622265-CDS-H-canaliculatus_F_contig14258:983..12181696845706.5622265-CDS-H-canaliculatus_F_contig14258:983..1218Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14258 984..1218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14258.3345.1

>prot_H-canaliculatus_F_contig14258.3345.1 ID=prot_H-canaliculatus_F_contig14258.3345.1|Name=mRNA_H-canaliculatus_F_contig14258.3345.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=219bp
MLLPSRACTIEPTTNCSCFSLWASTHQMSLPRPWRINAPFTYGTRRFELV
ILLSTNVPGVHLALRASSPNCQQQQTKRGPFTSFWTTHTNTFLGLYSKHE
PKRAEILRKPCLTSLYTVSREHKLSTEPRKVFNDAAIINPRDTKKKKKCR
APSFLYRTHTENSNLNLRTRKPRTAKFSPPTPRRQGFCVVLGTQERQPAI
PTHAHDYQHKKLLEQPRK*
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mRNA from alignment at H-canaliculatus_F_contig14258:317..1294+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14258.3345.1 ID=mRNA_H-canaliculatus_F_contig14258.3345.1|Name=mRNA_H-canaliculatus_F_contig14258.3345.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=978bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14258:317..1294+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGAGAGGAGTTCTGTCGCAGAAAAGGCGTCACGTTCTCCAAGCCTTCG
CGAGCACGCATCTCACCAACACTGCTAGTGGTTCAGTGCGATACCTCGAC
CCTGGCTGACGCTCTTGTGGTCTCAGATGCGCACCGTTGGTTCTCGGCCC
TCTTTAGCTTGCCCTACGATCTGTGAGGGAAGCACGAGGCGATGCTACTC
CCATCCCGGGCCTGCACAATCGAACCAACCACTAACTGTTCTTGCTTTTC
GTTATGGGCCAGCACACACCAAATGTCACTGCCAAGACCCTGGCGAATCA
ATGCTCCCTTTACTTATGGGACGCGTAGATTCGAGCTGGTTATCCTTCTG
TCCACCAACGTCCCCGGCGTTCACCTTGCGCTCCGCGCTTCTTCTCCCAA
CTGCCAACAACAGCAAACCAAGCGAGGACCATTTACATCGTTTTGGACTA
CCCACACAAATACATTCCTTGGACTCTACTCAAAACATGAACCAAAGAGA
GCTGAAATTCTTCGAAAACCCTGTTTAACTTCCTTGTACACAGTCAGTCG
TGAACACAAGCTCAGCACCGAACCCCGAAAAGTCTTCAACGACGCCGCGA
TAATAAATCCCAGAATTTGCGGTACTTCGGGCGCTCCTTGACGTAGACCC
GGCCGGCCTAAACTCACAGACACAAAAAAAAAAAAAAAGTGCCGCGCCCC
GAGCTTCCTGTATCGCACACATACGGAAAACTCGAACCTGAATCTCCGTA
CAAGAAAGCCTCGGACGGCAAAATTTTCGCCACCTACACCCCGTCGACAA
GGCTTTTGCGTCGTCTTAGGTACGCAAGAAAGGCAGCCAGCAATCCCGAC
ACACGCTCACGACTACCAACATAAAAAGTTATTGGAGCAACCGCGCAAGT
AGATACATGTCCCGCTTTGTCCACGTTGACGCGTAACAAACTTTTGTGCC
GTCCTCCCACTACGATGGCCTTCGACAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14258:317..1294+

>mRNA_H-canaliculatus_F_contig14258.3345.1 ID=mRNA_H-canaliculatus_F_contig14258.3345.1|Name=mRNA_H-canaliculatus_F_contig14258.3345.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1314bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14258:317..1294+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTACTCCCATCCCGGGCCTGCACAATCGAACCAACCACTAACTGTTC
TTGCTTTTCGTTATGGGCCAGCACACACCAAATGTCACTGCCAAGACCCT
GGCGAATCAATGCTCCCTTTACTTATGGGACGCGTAGATTCGAGCTGGTT
ATCCTTCTGTCCACCAACGTCCCCGGCGTTCACCTTGCGCTCCGCGCTTC
TTCTCCCAACTGCCAACAACAGCAAACCAAGCGAGGACCATTTACATCGT
TTTGGACTACCCACACAAATACATTCCTTGGACTCTACTCAAAACATGAA
CCAAAGAGAGCTGAAATTCTTCGAAAACCCTGTTTAACTTCCTTGTACAC
AGTCAGTCGTGAACACAAGCTCAGCACCGAACCCCGAAAAGTCTTCAACG
ACGCCGCGATAATAAATCCCAGATGCTACTCCCATCCCGGGCCTGCACAA
TCGAACCAACCACTAACTGTTCTTGCTTTTCGTTATGGGCCAGCACACAC
CAAATGTCACTGCCAAGACCCTGGCGAATCAATGCTCCCTTTACTTATGG
GACGCGTAGATTCGAGCTGGTTATCCTTCTGTCCACCAACGTCCCCGGCG
TTCACCTTGCGCTCCGCGCTTCTTCTCCCAACTGCCAACAACAGCAAACC
AAGCGAGGACCATTTACATCGTTTTGGACTACCCACACAAATACATTCCT
TGGACTCTACTCAAAACATGAACCAAAGAGAGCTGAAATTCTTCGAAAAC
CCTGTTTAACTTCCTTGTACACAGTCAGTCGTGAACACAAGCTCAGCACC
GAACCCCGAAAAGTCTTCAACGACGCCGCGATAATAAATCCCAGAGACAC
AAAAAAAAAAAAAAAGTGCCGCGCCCCGAGCTTCCTGTATCGCACACATA
CGGAAAACTCGAACCTGAATCTCCGTACAAGAAAGCCTCGGACGGCAAAA
TTTTCGCCACCTACACCCCGTCGACAAGGCTTTTGCGTCGTCTTAGGTAC
GCAAGAAAGGCAGCCAGCAATCCCGACACACGCTCACGACTACCAACATA
AAAAGTTATTGGAGCAACCGCGCAAGTAGAGACACAAAAAAAAAAAAAAA
GTGCCGCGCCCCGAGCTTCCTGTATCGCACACATACGGAAAACTCGAACC
TGAATCTCCGTACAAGAAAGCCTCGGACGGCAAAATTTTCGCCACCTACA
CCCCGTCGACAAGGCTTTTGCGTCGTCTTAGGTACGCAAGAAAGGCAGCC
AGCAATCCCGACACACGCTCACGACTACCAACATAAAAAGTTATTGGAGC
AACCGCGCAAGTAG
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