mRNA_H-canaliculatus_F_contig14254.3344.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14254.3344.1
Unique NamemRNA_H-canaliculatus_F_contig14254.3344.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14254.3344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14254contigH-canaliculatus_F_contig14254:1013..1646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size603
Cds size603
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.5049691-CDS-H-canaliculatus_F_contig14254:1012..15531622929174.5049691-CDS-H-canaliculatus_F_contig14254:1012..1553Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14254 1013..1553 -
1696845706.5120552-CDS-H-canaliculatus_F_contig14254:1012..15531696845706.5120552-CDS-H-canaliculatus_F_contig14254:1012..1553Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14254 1013..1553 -
1622929174.5207992-CDS-H-canaliculatus_F_contig14254:1584..16461622929174.5207992-CDS-H-canaliculatus_F_contig14254:1584..1646Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14254 1585..1646 -
1696845706.5202842-CDS-H-canaliculatus_F_contig14254:1584..16461696845706.5202842-CDS-H-canaliculatus_F_contig14254:1584..1646Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14254 1585..1646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14254.3344.1prot_H-canaliculatus_F_contig14254.3344.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14254 1013..1646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14254.3344.1

>prot_H-canaliculatus_F_contig14254.3344.1 ID=prot_H-canaliculatus_F_contig14254.3344.1|Name=mRNA_H-canaliculatus_F_contig14254.3344.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=201bp
MRGVQTKAQAGLSGEEGRKAGTRQPSPSTRSVARRSERTSRIKWIKWHGI
SQRNFHPGDPCRGHSRARLRVTETKLQAKPCQSARARACSLLICRRRKSL
IRADGRVRHRTPPTAPPLNSRHAPKPQLPAVPRKTTHARATVQQPPSPAP
CPRSSARRCMHNLTGGTTLRFFANCLRLPACLPAGPPAYLAVCLLSSPDR
*
back to top

mRNA from alignment at H-canaliculatus_F_contig14254:1013..1646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14254.3344.1 ID=mRNA_H-canaliculatus_F_contig14254.3344.1|Name=mRNA_H-canaliculatus_F_contig14254.3344.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=634bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14254:1013..1646- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGGGGGTCCAGACGAAAGCGCAAGCGGGGCTGAGCGGAGAGGAGGG
GAGAAAAGCAGGGCACGGCGAAGCAGAGCAGAGCAGAATGGAGCACGAGA
CAGCCGAGCCCTTCAACGCGGTCGGTCGCAAGAAGAAGCGAACGAACGAG
TCGGATCAAGTGGATCAAGTGGCATGGGATATCGCAGCGAAACTTTCATC
CCGGAGACCCGTGCCGCGGTCATTCCCGCGCCCGACTCCGCGTCACCGAA
ACCAAACTCCAAGCCAAGCCGTGCCAGTCAGCACGTGCTCGTGCCTGCTC
CCTGCTGATCTGCCGCAGAAGGAAAAGCCTCATTCGTGCCGACGGTCGAG
TGCGCCACCGCACGCCGCCCACCGCGCCACCACTCAATTCGCGTCACGCG
CCCAAGCCACAGCTCCCCGCTGTGCCCCGCAAAACAACCCACGCCAGAGC
CACTGTGCAACAACCACCGAGCCCAGCCCCATGCCCGAGGAGCTCCGCGC
GACGTTGTATGCACAACCTCACCGGCGGCACAACGTTGCGTTTCTTCGCG
AACTGCCTCCGTCTGCCCGCCTGCTTGCCTGCGGGGCCACCTGCCTATCT
GGCGGTCTGTCTGCTCTCGTCACCTGACCGTTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14254:1013..1646-

>mRNA_H-canaliculatus_F_contig14254.3344.1 ID=mRNA_H-canaliculatus_F_contig14254.3344.1|Name=mRNA_H-canaliculatus_F_contig14254.3344.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1206bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14254:1013..1646- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGGGGGTCCAGACGAAAGCGCAAGCGGGGCTGAGCGGAGAGGAGGG
GAGAAAAGCAGGATGCGGGGGGTCCAGACGAAAGCGCAAGCGGGGCTGAG
CGGAGAGGAGGGGAGAAAAGCAGGCACGAGACAGCCGAGCCCTTCAACGC
GGTCGGTCGCAAGAAGAAGCGAACGAACGAGTCGGATCAAGTGGATCAAG
TGGCATGGGATATCGCAGCGAAACTTTCATCCCGGAGACCCGTGCCGCGG
TCATTCCCGCGCCCGACTCCGCGTCACCGAAACCAAACTCCAAGCCAAGC
CGTGCCAGTCAGCACGTGCTCGTGCCTGCTCCCTGCTGATCTGCCGCAGA
AGGAAAAGCCTCATTCGTGCCGACGGTCGAGTGCGCCACCGCACGCCGCC
CACCGCGCCACCACTCAATTCGCGTCACGCGCCCAAGCCACAGCTCCCCG
CTGTGCCCCGCAAAACAACCCACGCCAGAGCCACTGTGCAACAACCACCG
AGCCCAGCCCCATGCCCGAGGAGCTCCGCGCGACGTTGTATGCACAACCT
CACCGGCGGCACAACGTTGCGTTTCTTCGCGAACTGCCTCCGTCTGCCCG
CCTGCTTGCCTGCGGGGCCACCTGCCTATCTGGCGGTCTGTCTGCTCTCG
TCACCTGACCGTTGACACGAGACAGCCGAGCCCTTCAACGCGGTCGGTCG
CAAGAAGAAGCGAACGAACGAGTCGGATCAAGTGGATCAAGTGGCATGGG
ATATCGCAGCGAAACTTTCATCCCGGAGACCCGTGCCGCGGTCATTCCCG
CGCCCGACTCCGCGTCACCGAAACCAAACTCCAAGCCAAGCCGTGCCAGT
CAGCACGTGCTCGTGCCTGCTCCCTGCTGATCTGCCGCAGAAGGAAAAGC
CTCATTCGTGCCGACGGTCGAGTGCGCCACCGCACGCCGCCCACCGCGCC
ACCACTCAATTCGCGTCACGCGCCCAAGCCACAGCTCCCCGCTGTGCCCC
GCAAAACAACCCACGCCAGAGCCACTGTGCAACAACCACCGAGCCCAGCC
CCATGCCCGAGGAGCTCCGCGCGACGTTGTATGCACAACCTCACCGGCGG
CACAACGTTGCGTTTCTTCGCGAACTGCCTCCGTCTGCCCGCCTGCTTGC
CTGCGGGGCCACCTGCCTATCTGGCGGTCTGTCTGCTCTCGTCACCTGAC
CGTTGA
back to top