mRNA_H-canaliculatus_F_contig14250.3343.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14250.3343.1
Unique NamemRNA_H-canaliculatus_F_contig14250.3343.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14250.3343.1 vs. uniprot
Match: A0A6H5KYB6_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB6_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 6.180e-69
Identity = 102/113 (90.27%), Postives = 109/113 (96.46%), Query Frame = 1
Query:   19 QILWFVMYVVSTLYTFLWDVLQDWGLGYPGYGLLRKKRLFARSAVYYAAVVVDLLLRFNWLYSLIPPGHNPLPFVHSSTLPVMITTNVIVCEFLRRTMWGFFRVENEHLNNTE 357
            +ILWFVMYVVSTLYTF WDVLQDWGLG+P YG LRKKRLF RS+VYYAAVV+DL+LRFNWLYSLIPPGHNPLPF+HSSTLPV+ITTNVIVCEFLRRTMWGFFRVENEHLNNTE
Sbjct:  200 KILWFVMYVVSTLYTFSWDVLQDWGLGHPMYGFLRKKRLFPRSSVYYAAVVLDLVLRFNWLYSLIPPGHNPLPFMHSSTLPVVITTNVIVCEFLRRTMWGFFRVENEHLNNTE 312          
BLAST of mRNA_H-canaliculatus_F_contig14250.3343.1 vs. uniprot
Match: A0A835ZE89_9STRA (EXS family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE89_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.100e-33
Identity = 60/111 (54.05%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   25 LWFVMYVVSTLYTFLWDVLQDWGLGYPGYGLLRKKRLFARSAVYYAAVVVDLLLRFNWLYSLIPPGHNPLPFVHSSTLPVMITTNVIVCEFLRRTMWGFFRVENEHLNNTE 357
            +W  +Y+VS+LY+F WD+ QDWGLG+  +G L ++R+ +R  VY+A + VDL+LRFNWLYS IPPG +     H   +P  +TT VI+ E  RRT+WGFFR+ENEHL NTE
Sbjct:  684 IWMALYIVSSLYSFWWDIKQDWGLGHRKHGWLSERRMHSRVWVYWATIAVDLILRFNWLYSFIPPGTS-----HFFIVPNYVTTVVIMLEIFRRTLWGFFRLENEHLRNTE 789          
BLAST of mRNA_H-canaliculatus_F_contig14250.3343.1 vs. uniprot
Match: A0A835YP28_9STRA (EXS family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP28_9STRA)

HSP 1 Score: 125 bits (314), Expect = 5.410e-31
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1
Query:   46 VSTLYTFLWDVLQDWGLGYPGYGLLRKKRLFARSAVYYAAVVVDLLLRFNWLYSLIPPGHNPLPFVHSSTLPVMITTNVIVCEFLRRTMWGFFRVENEHLNNTE 357
            +++LY+F WDV QDWGLG+  +G L  +R+ +R   YYA + VDL+LRFNWLYS IPPG +     H   LP  +TT VI+ E  RRT+WGFFR+ENEHL NTE
Sbjct:  653 LNSLYSFWWDVRQDWGLGHRQFGYLSDRRMQSRRWAYYATIAVDLVLRFNWLYSFIPPGKS-----HFFILPNYVTTLVIILEIFRRTLWGFFRLENEHLRNTE 751          
BLAST of mRNA_H-canaliculatus_F_contig14250.3343.1 vs. uniprot
Match: A0A2D4BK39_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK39_PYTIN)

HSP 1 Score: 123 bits (309), Expect = 2.650e-30
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 1
Query:   16 FQILWFVMYVVSTLYTFLWDVLQDWGLGYPGYGLLRKKRLFARSAVYYAAVVVDLLLRFNWLYSLIPPGHNPLPFVHSSTLPVMITTNVIVCEFLRRTMWGFFRVENEHLNNTE 357
            FQI W  ++ +S+LYT++WDV  DWGLG P Y  L  +++F+R  VYY A+V DL+LRF W  +LIPPG        SS+LP+ +    +V E  RRT WGFFR+ENEHL NT+
Sbjct:  889 FQIAWITLFTMSSLYTWVWDVWMDWGLGRPQYKFLGDRQMFSRRWVYYVAIVADLVLRFAWTLTLIPPGS-------SSSLPLYLQPFTMVLELFRRTYWGFFRLENEHLRNTQ 995          
BLAST of mRNA_H-canaliculatus_F_contig14250.3343.1 vs. uniprot
Match: A0A5D6XES5_9STRA (EXS domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XES5_9STRA)

HSP 1 Score: 118 bits (296), Expect = 7.670e-30
Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   16 FQILWFVMYVVSTLYTFLWDVLQDWGLGYPGYGLLRKKRLFARSAVYYAAVVVDLLLRFNWLYSLIPPGHNPLPFVHSSTLPVMITTNVIVCEFLRRTMWGFFRVENEHLNNTE 357
            FQ+ W V++ +S+LYT++WDV  DWGLG+P +  L  +++F+R+ VYY A+V DL LRF W  SL+PP  + +       LP+ +    +V E  RRT W FFR+ENEHL NT+
Sbjct:  169 FQVTWVVLFALSSLYTWVWDVTMDWGLGHPEHKFLSDRQMFSRTWVYYVAIVADLFLRFAWTLSLVPPQSSRM-------LPLYLQPFTMVAELFRRTFWSFFRLENEHLRNTQ 275          
BLAST of mRNA_H-canaliculatus_F_contig14250.3343.1 vs. uniprot
Match: A0A8K1FRU7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRU7_PYTOL)

HSP 1 Score: 120 bits (301), Expect = 2.920e-29
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   16 FQILWFVMYVVSTLYTFLWDVLQDWGLGYPGYGLLRKKRLFARSAVYYAAVVVDLLLRFNWLYSLIPPGHNPLPFVHSSTLPVMITTNVIVCEFLRRTMWGFFRVENEHLNNTE 357
            FQ++W  ++ +S+LYT++WDV  DWGLG P Y  L  +++F+R  VYYAA++ D  LRF W  SLIPP H+      SS+LP+ +    +V E  RRT WGFFR+ENEHL NT+
Sbjct:  538 FQLVWITLFTLSSLYTWVWDVWMDWGLGRPQYKFLGDRQMFSRLWVYYAAILADFFLRFAWTLSLIPP-HS------SSSLPLYLQPFTMVIELFRRTFWGFFRLENEHLRNTQ 644          
BLAST of mRNA_H-canaliculatus_F_contig14250.3343.1 vs. uniprot
Match: F0WM75_9STRA (Uncharacterized protein AlNc14C153G7578 n=2 Tax=Albugo TaxID=65356 RepID=F0WM75_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.630e-28
Identity = 55/114 (48.25%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   16 FQILWFVMYVVSTLYTFLWDVLQDWGLGYPGYGLLRKKRLFARSAVYYAAVVVDLLLRFNWLYSLIPPGHNPLPFVHSSTLPVMITTNVIVCEFLRRTMWGFFRVENEHLNNTE 357
            FQI+W  ++ +S+LYT++WDV  DWGLG P +  L  +++F R  VYY A+V DL LRF+W  SL+PP         S TLP+ +    +V E  RRT W FFR+ENEHL NT+
Sbjct:  545 FQIVWVFLFTISSLYTWIWDVGMDWGLGRPQFHYLGDRQMFGRLWVYYVAIVADLFLRFSWTLSLVPPNT-------SRTLPLYLQPFTMVLELFRRTFWSFFRLENEHLRNTQ 651          
BLAST of mRNA_H-canaliculatus_F_contig14250.3343.1 vs. uniprot
Match: G4ZU99_PHYSP (EXS domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZU99_PHYSP)

HSP 1 Score: 107 bits (268), Expect = 2.970e-27
Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 1
Query:   16 FQILWFVMYVVSTLYTFLWDVLQDWGLGYPGYGLLRKKRLFARSAVYYAAVVVDLLLRFNWLYSLIPPGHNPLPFVHSSTLPVMITTNVIVCEFLRRTMWGFFRVENEHLNNTE 357
            F + W  ++  S+LYT++WDV  DWGLG P Y  L   ++F+   VYYAA++ DL LRF W  +LIPP         +  LP+ +    +V E  RRT W FFR+ENEHL NT+
Sbjct:    6 FVVAWLFLFTASSLYTWVWDVTMDWGLGRPQYKFLGDSQMFSHKWVYYAAIIGDLFLRFAWTLTLIPPRGA------ARWLPLYLQPFTMVLELFRRTFWSFFRLENEHLRNTQ 113          
BLAST of mRNA_H-canaliculatus_F_contig14250.3343.1 vs. uniprot
Match: K3WSV9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSV9_GLOUD)

HSP 1 Score: 114 bits (286), Expect = 3.210e-27
Identity = 56/115 (48.70%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   16 FQILWFVMYVVSTLYTFLWDVLQDWGLGYPGYGLLRKKRLFARSAVYYAAVVVDLLLRFNWLYSLIPPGHNPLPFVHSST-LPVMITTNVIVCEFLRRTMWGFFRVENEHLNNTE 357
            FQI W V++ +S++YT++WDV  DWGLG P +  L  +++F+R  VYY A+V DL LRF W  +LIPP        HSS  LP+ +    +V E  RRT W FFR+ENEHL NT+
Sbjct:  566 FQITWIVLFTLSSMYTWVWDVTMDWGLGRPQHKFLGDRQMFSRKWVYYLAIVADLFLRFAWTMTLIPP--------HSSRMLPLYLLPFTMVGELFRRTFWSFFRLENEHLRNTQ 672          
BLAST of mRNA_H-canaliculatus_F_contig14250.3343.1 vs. uniprot
Match: A0A7S3EQK1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EQK1_9RHOD)

HSP 1 Score: 112 bits (280), Expect = 2.090e-26
Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = 1
Query:   16 FQILWFVMYVVSTLYTFLWDVLQDWGLGYPGYGLLRKKRLFARSAVYYAAVVVDLLLRFNWLYSLIPPGHNP---LPFVHSSTLPVMITTNVIVCEFLRRTMWGFFRVENEHLNNT 354
            F  +W +++ VS  ++F+WDVL DWGLG P  G L  K L+ R   YY A+V D  LRF+WL +L+  G+     L F+      V++ T + + E  RRTMWGFFR+ENEHL NT
Sbjct:  571 FAAVWILLFAVSGFFSFIWDVLIDWGLGRPECGFLSDKLLYGRREYYYLAIVTDFFLRFSWLLTLVGAGNAKYLGLSFLPEGNAVVLLQTVIEIAEVFRRTMWGFFRLENEHLRNT 686          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14250.3343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYB6_9PHAE6.180e-6990.27EXS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZE89_9STRA1.100e-3354.05EXS family-domain-containing protein n=1 Tax=Tribo... [more]
A0A835YP28_9STRA5.410e-3155.77EXS family-domain-containing protein n=1 Tax=Tribo... [more]
A0A2D4BK39_PYTIN2.650e-3050.88Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A5D6XES5_9STRA7.670e-3046.49EXS domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A8K1FRU7_PYTOL2.920e-2950.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0WM75_9STRA2.630e-2848.25Uncharacterized protein AlNc14C153G7578 n=2 Tax=Al... [more]
G4ZU99_PHYSP2.970e-2744.74EXS domain-containing protein n=1 Tax=Phytophthora... [more]
K3WSV9_GLOUD3.210e-2748.70Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S3EQK1_9RHOD2.090e-2645.69Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14250contigH-canaliculatus_F_contig14250:684..1524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue3.4e-24
Seed eggNOG ortholog653948.CCA22403
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005886,GO:0012505,GO:0016020,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.phosphate ion transport
EggNOG OGsCOG5409@1,KOG1162@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size363
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.4519792-CDS-H-canaliculatus_F_contig14250:683..8961622929174.4519792-CDS-H-canaliculatus_F_contig14250:683..896Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14250 684..896 -
1696845706.490407-CDS-H-canaliculatus_F_contig14250:683..8961696845706.490407-CDS-H-canaliculatus_F_contig14250:683..896Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14250 684..896 -
1622929174.468685-CDS-H-canaliculatus_F_contig14250:1374..15241622929174.468685-CDS-H-canaliculatus_F_contig14250:1374..1524Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14250 1375..1524 -
1696845706.502192-CDS-H-canaliculatus_F_contig14250:1374..15241696845706.502192-CDS-H-canaliculatus_F_contig14250:1374..1524Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14250 1375..1524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14250.3343.1prot_H-canaliculatus_F_contig14250.3343.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14250 684..1524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14250.3343.1

>prot_H-canaliculatus_F_contig14250.3343.1 ID=prot_H-canaliculatus_F_contig14250.3343.1|Name=mRNA_H-canaliculatus_F_contig14250.3343.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
MSPLPFQILWFVMYVVSTLYTFLWDVLQDWGLGYPGYGLLRKKRLFARSA
VYYAAVVVDLLLRFNWLYSLIPPGHNPLPFVHSSTLPVMITTNVIVCEFL
RRTMWGFFRVENEHLNNTEV*
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mRNA from alignment at H-canaliculatus_F_contig14250:684..1524-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14250.3343.1 ID=mRNA_H-canaliculatus_F_contig14250.3343.1|Name=mRNA_H-canaliculatus_F_contig14250.3343.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=841bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14250:684..1524- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTCCTCTTCCTTTTCAGATCTTGTGGTTTGTGATGTACGTGGTGTC GACGCTGTATACCTTCCTTTGGGATGTGCTGCAGGACTGGGGCCTCGGCT ACCCCGGCTACGGGCTCCTCCGTAAGAAGAGGCTCTTCGCGAGGTCGGCG GTACGTCCTGCCTGCCCCCCCTGCGTGCCTGCTCGCTTCCTCGCCTGCCT TCTTGTCTGTATGCCTGTATGTGTGGAATGTCTGTCTCCGTCTATTATCT GTCCGTCCGTCCGCATGGCCTGTTCTCGACGACTGTTTCGCTTCGTGCAG GAAAGGCATCGACCTCGGCGCGCCTCGGGTGATACGCGAACCCCCCCCCC CCGCGCCAGACGCCATCTTAGCTTGCTGGAGATTGCTTGCCATCCCGCTC GCCTCCAATCGTTCACCGTAGAACCCCGTCATCGACGAATGTCTTGTCTT CCTTTCTCGTCCCCCCGCCTATTTCGGTCGTCTTCTCTCCTATGCTTCTC GCTTGGAAAATGAAGTTGCGTCTCGCCTGCTCTTCGTGGGTCGCCCCCCC TTCCCCCTCCCCCCCCGCCCCCCCCACCCAATGTGTTTCCCGCACGGCAC CATCTCGAATCTTTTCGACGCTGCGAAGGTCTACTACGCTGCCGTGGTGG TGGACCTGCTGCTGCGGTTCAATTGGCTGTACTCCCTCATCCCACCGGGG CACAACCCGCTCCCGTTCGTGCACAGCTCCACGCTGCCCGTGATGATCAC GACCAACGTCATCGTCTGCGAGTTTCTCCGGAGAACCATGTGGGGCTTCT TCCGCGTGGAGAACGAGCACCTCAACAACACAGAGGTATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14250:684..1524-

>mRNA_H-canaliculatus_F_contig14250.3343.1 ID=mRNA_H-canaliculatus_F_contig14250.3343.1|Name=mRNA_H-canaliculatus_F_contig14250.3343.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14250:684..1524- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTCCTCTTCCTTTTCAGATCTTGTGGTTTGTGATGTACGTGGTGTC
GACGCTGTATACCTTCCTTTGGGATGTGCTGCAGGACTGGGGCCTCGGCT
ACCCCGGCTACGGGCTCCTCCGTAAGAAGAGGCTCTTCGCGAGGTCGGCG
ATGTCTCCTCTTCCTTTTCAGATCTTGTGGTTTGTGATGTACGTGGTGTC
GACGCTGTATACCTTCCTTTGGGATGTGCTGCAGGACTGGGGCCTCGGCT
ACCCCGGCTACGGGCTCCTCCGTAAGAAGAGGCTCTTCGCGAGGTCGGCG
GTCTACTACGCTGCCGTGGTGGTGGACCTGCTGCTGCGGTTCAATTGGCT
GTACTCCCTCATCCCACCGGGGCACAACCCGCTCCCGTTCGTGCACAGCT
CCACGCTGCCCGTGATGATCACGACCAACGTCATCGTCTGCGAGTTTCTC
CGGAGAACCATGTGGGGCTTCTTCCGCGTGGAGAACGAGCACCTCAACAA
CACAGAGGTATGAGTCTACTACGCTGCCGTGGTGGTGGACCTGCTGCTGC
GGTTCAATTGGCTGTACTCCCTCATCCCACCGGGGCACAACCCGCTCCCG
TTCGTGCACAGCTCCACGCTGCCCGTGATGATCACGACCAACGTCATCGT
CTGCGAGTTTCTCCGGAGAACCATGTGGGGCTTCTTCCGCGTGGAGAACG
AGCACCTCAACAACACAGAGGTATGA
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