mRNA_H-canaliculatus_F_contig14250.3342.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14250.3342.1
Unique NamemRNA_H-canaliculatus_F_contig14250.3342.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14250.3342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14250contigH-canaliculatus_F_contig14250:214..672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.402758-UTR-H-canaliculatus_F_contig14250:213..3511622929174.402758-UTR-H-canaliculatus_F_contig14250:213..351Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14250 214..351 +
1696845706.4669404-UTR-H-canaliculatus_F_contig14250:213..3511696845706.4669404-UTR-H-canaliculatus_F_contig14250:213..351Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14250 214..351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.414183-CDS-H-canaliculatus_F_contig14250:351..6721622929174.414183-CDS-H-canaliculatus_F_contig14250:351..672Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14250 352..672 +
1696845706.478609-CDS-H-canaliculatus_F_contig14250:351..6721696845706.478609-CDS-H-canaliculatus_F_contig14250:351..672Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14250 352..672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14250.3342.1prot_H-canaliculatus_F_contig14250.3342.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14250 352..672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14250.3342.1

>prot_H-canaliculatus_F_contig14250.3342.1 ID=prot_H-canaliculatus_F_contig14250.3342.1|Name=mRNA_H-canaliculatus_F_contig14250.3342.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
MNDPSLHVSSQTLSSRCASRISREGYDHVQSTSRFRLSTEVLQRLAHITT
GTNRSGQAKQADCEDQTSETDARLLCAETVALCAHPLTHPSSGTLTLAVP
PITPRSL
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mRNA from alignment at H-canaliculatus_F_contig14250:214..672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14250.3342.1 ID=mRNA_H-canaliculatus_F_contig14250.3342.1|Name=mRNA_H-canaliculatus_F_contig14250.3342.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=459bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14250:214..672+ (Hapterophycus canaliculatus Oshoro5f female)
CTTACCTCACCGAGTGCAGAAACACAAATTGCTTTTCGCAAGAGTTCGAA
GGGCGATTTTTGTGTCGGATTTTCGGCTCTGCACGCCCGTCCGTCCCCTC
TTTAGTCGAAAGGTCCACATTTGTGAGATGCGCGACACATGAATGATCCC
TCTCTTCACGTGTCATCACAAACTCTCTCATCCCGTTGTGCCAGCCGAAT
TTCGCGCGAAGGTTACGATCATGTGCAATCAACTTCCCGTTTTCGTCTCT
CCACAGAAGTTCTCCAAAGGCTCGCGCATATCACCACGGGAACAAATCGC
TCTGGACAAGCAAAGCAAGCGGATTGTGAAGACCAAACCTCGGAGACTGA
CGCGCGTCTCCTCTGTGCCGAAACCGTCGCACTCTGTGCCCATCCCCTCA
CACACCCCTCCTCCGGCACCCTTACTCTCGCGGTGCCCCCGATCACCCCC
CGATCACTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14250:214..672+

>mRNA_H-canaliculatus_F_contig14250.3342.1 ID=mRNA_H-canaliculatus_F_contig14250.3342.1|Name=mRNA_H-canaliculatus_F_contig14250.3342.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14250:214..672+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAATGATCCCTCTCTTCACGTGTCATCACAAACTCTCTCATCCCGTTG
TGCCAGCCGAATTTCGCGCGAAGGTTACGATCATGTGCAATCAACTTCCC
GTTTTCGTCTCTCCACAGAAGTTCTCCAAAGGCTCGCGCATATCACCACG
GGAACAAATCGCTCTGGACAAGCAAAGCAAGCGGATTGTGAAGACCAAAC
CTCGGAGACTGACGCGCGTCTCCTCTGTGCCGAAACCGTCGCACTCTGTG
CCCATCCCCTCACACACCCCTCCTCCGGCACCCTTACTCTCGCGGTGCCC
CCGATCACCCCCCGATCACTCATGAATGATCCCTCTCTTCACGTGTCATC
ACAAACTCTCTCATCCCGTTGTGCCAGCCGAATTTCGCGCGAAGGTTACG
ATCATGTGCAATCAACTTCCCGTTTTCGTCTCTCCACAGAAGTTCTCCAA
AGGCTCGCGCATATCACCACGGGAACAAATCGCTCTGGACAAGCAAAGCA
AGCGGATTGTGAAGACCAAACCTCGGAGACTGACGCGCGTCTCCTCTGTG
CCGAAACCGTCGCACTCTGTGCCCATCCCCTCACACACCCCTCCTCCGGC
ACCCTTACTCTCGCGGTGCCCCCGATCACCCCCCGATCACTC
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