mRNA_H-canaliculatus_F_contig14249.3340.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14249.3340.1
Unique NamemRNA_H-canaliculatus_F_contig14249.3340.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14249.3340.1 vs. uniprot
Match: D7FH73_ECTSI (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH73_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.940e-19
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 QLIELLKSEDKNVVSIACYDLGEFVRFYPSGKTIVKHLG 117
            QLIELLKSEDK+VVSIACYDLGEFVRFYPSGKTIVKHLG
Sbjct:   36 QLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG 74
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BLAST of mRNA_H-canaliculatus_F_contig14249.3340.1 vs. uniprot
Match: A0A6H5LCE7_9PHAE (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCE7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.560e-17
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 QLIELLKSEDKNVVSIACYDLGEFVRFYPSGKTIVKHLG 117
            QLIELLKSEDK+VVSIACYDLGEFVRFYPSGKTIVKHLG
Sbjct:  447 QLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG 485
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BLAST of mRNA_H-canaliculatus_F_contig14249.3340.1 vs. uniprot
Match: A0A7S2H8Z8_9STRA (V-type proton ATPase subunit H n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H8Z8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.040e-12
Identity = 30/39 (76.92%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 QLIELLKSEDKNVVSIACYDLGEFVRFYPSGKTIVKHLG 117
            +LIELL+S+D  VVS+ACYDLGEFVRFYP+GK+IVK+LG
Sbjct:  375 ELIELLRSDDPEVVSVACYDLGEFVRFYPNGKSIVKNLG 413
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BLAST of mRNA_H-canaliculatus_F_contig14249.3340.1 vs. uniprot
Match: A0A835Z9Q6_9STRA (V-type H+-transporting ATPase 54 kd subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.680e-12
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    4 LIELLKSEDKNVVSIACYDLGEFVRFYPSGKTIVKHLG 117
            LI LL+SED+ VV+IACYDLGEFVRFYP+GK I+KHLG
Sbjct:  385 LIGLLRSEDETVVAIACYDLGEFVRFYPTGKAILKHLG 422
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BLAST of mRNA_H-canaliculatus_F_contig14249.3340.1 vs. uniprot
Match: A0A7S2SKW2_9STRA (V-type proton ATPase subunit H n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKW2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.980e-12
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    4 LIELLKSEDKNVVSIACYDLGEFVRFYPSGKTIVKHLG 117
            LI LLKSED  VVS+ACYDLGEFVRFYP+G++IVK+LG
Sbjct:  370 LIGLLKSEDNEVVSVACYDLGEFVRFYPNGRSIVKNLG 407
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BLAST of mRNA_H-canaliculatus_F_contig14249.3340.1 vs. uniprot
Match: F0XWY7_AURAN (V-ATPase_H_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWY7_AURAN)

HSP 1 Score: 60.8 bits (146), Expect = 7.810e-11
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    4 LIELLKSE-DKNVVSIACYDLGEFVRFYPSGKTIVKHLG 117
            L++LL  + D  VVSIACYD+GEFVRFYP+GK +VKHLG
Sbjct:   44 LVQLLDGDRDPTVVSIACYDVGEFVRFYPNGKAVVKHLG 82
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BLAST of mRNA_H-canaliculatus_F_contig14249.3340.1 vs. uniprot
Match: A0A1E7FC18_9STRA (ARM repeat-containing protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FC18_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 7.450e-10
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    4 LIELLKSEDKNVVSIACYDLGEFVRFYPSGKTIVKHLG 117
            LI LL S+D+ VV+IACYD+GEFVRFYP+G++I K LG
Sbjct:  441 LITLLSSKDEEVVAIACYDIGEFVRFYPNGRSITKRLG 478
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BLAST of mRNA_H-canaliculatus_F_contig14249.3340.1 vs. uniprot
Match: A0A7S2S4S4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S4S4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.390e-9
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    4 LIELLKSEDKNVVSIACYDLGEFVRFYPSGKTIVKHLG 117
            LI LL S D+ +VSIACYD+GEFVRFYP+G+ I K LG
Sbjct:  448 LIALLASRDEEIVSIACYDIGEFVRFYPNGRQIAKRLG 485
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BLAST of mRNA_H-canaliculatus_F_contig14249.3340.1 vs. uniprot
Match: I2CP76_NANGC (V-type proton ATPase subunit H n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP76_NANGC)

HSP 1 Score: 60.1 bits (144), Expect = 1.900e-9
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 LIELLKSEDKNVVSIACYDLGEFVRFYPSGKTIVKHLG 117
            LI LL SED+ VV+IACYD+GEF RFYP+G++IVK  G
Sbjct:  370 LISLLASEDEEVVAIACYDIGEFARFYPNGRSIVKLFG 407
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BLAST of mRNA_H-canaliculatus_F_contig14249.3340.1 vs. uniprot
Match: A0A7S0ATY0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ATY0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.320e-9
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    4 LIELLKSEDKNVVSIACYDLGEFVRFYPSGKTIVKHLG 117
            LI LL S+D+ V SIAC+D+GEFVR+YP+G+ I K LG
Sbjct:   86 LIALLSSKDEEVASIACHDIGEFVRYYPNGRAIAKRLG 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14249.3340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH73_ECTSI3.940e-1997.44V-ATPase_H_C domain-containing protein n=1 Tax=Ect... [more]
A0A6H5LCE7_9PHAE6.560e-1797.44V-ATPase_H_C domain-containing protein n=1 Tax=Ect... [more]
A0A7S2H8Z8_9STRA1.040e-1276.92V-type proton ATPase subunit H n=1 Tax=Dictyocha s... [more]
A0A835Z9Q6_9STRA2.680e-1278.95V-type H+-transporting ATPase 54 kd subunit n=1 Ta... [more]
A0A7S2SKW2_9STRA4.980e-1278.95V-type proton ATPase subunit H n=1 Tax=Rhizochromu... [more]
F0XWY7_AURAN7.810e-1169.23V-ATPase_H_C domain-containing protein (Fragment) ... [more]
A0A1E7FC18_9STRA7.450e-1068.42ARM repeat-containing protein n=2 Tax=Bacillariace... [more]
A0A7S2S4S4_9STRA1.390e-968.42Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
I2CP76_NANGC1.900e-968.42V-type proton ATPase subunit H n=1 Tax=Nannochloro... [more]
A0A7S0ATY0_9STRA4.320e-963.16Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14249contigH-canaliculatus_F_contig14249:118..237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue6.8e-14
Seed eggNOG ortholog2880.D7FH73
Preferred nameATP6V1H
KEGG koko:K02144
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04150,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04150,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006403,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0006897,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008340,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009894,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010506,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016032,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030234,GO:0030641,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033227,GO:0033572,GO:0034220,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045851,GO:0046961,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050690,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.proton-transporting ATPase activity, rotational mechanism
EggNOG OGsCOG5231@1,KOG2759@2759
Ec32 ortholog descriptionATPase, V1 complex, subunit H, C-terminal
Ec32 orthologEc-00_000200.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.242069-CDS-H-canaliculatus_F_contig14249:117..2371622929174.242069-CDS-H-canaliculatus_F_contig14249:117..237Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14249 118..237 +
1696845706.3853889-CDS-H-canaliculatus_F_contig14249:117..2371696845706.3853889-CDS-H-canaliculatus_F_contig14249:117..237Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14249 118..237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14249.3340.1prot_H-canaliculatus_F_contig14249.3340.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14249 118..237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14249.3340.1

>prot_H-canaliculatus_F_contig14249.3340.1 ID=prot_H-canaliculatus_F_contig14249.3340.1|Name=mRNA_H-canaliculatus_F_contig14249.3340.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=40bp
QLIELLKSEDKNVVSIACYDLGEFVRFYPSGKTIVKHLG*
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mRNA from alignment at H-canaliculatus_F_contig14249:118..237+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14249.3340.1 ID=mRNA_H-canaliculatus_F_contig14249.3340.1|Name=mRNA_H-canaliculatus_F_contig14249.3340.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=120bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14249:118..237+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCTCATCGAGCTTCTCAAGTCCGAGGACAAGAACGTGGTGTCCATCGC
GTGCTACGACCTGGGGGAGTTCGTGCGCTTCTACCCGAGCGGCAAGACCA
TCGTAAAACACCTCGGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14249:118..237+

>mRNA_H-canaliculatus_F_contig14249.3340.1 ID=mRNA_H-canaliculatus_F_contig14249.3340.1|Name=mRNA_H-canaliculatus_F_contig14249.3340.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=240bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14249:118..237+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCTCATCGAGCTTCTCAAGTCCGAGGACAAGAACGTGGTGTCCATCGC
GTGCTACGACCTGGGGGAGTTCGTGCGCTTCTACCCGAGCGGCAAGACCA
TCGTAAAACACCTCGGGTGACAGCTCATCGAGCTTCTCAAGTCCGAGGAC
AAGAACGTGGTGTCCATCGCGTGCTACGACCTGGGGGAGTTCGTGCGCTT
CTACCCGAGCGGCAAGACCATCGTAAAACACCTCGGGTGA
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