mRNA_H-canaliculatus_F_contig14245.3336.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14245.3336.1
Unique NamemRNA_H-canaliculatus_F_contig14245.3336.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14245.3336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14245contigH-canaliculatus_F_contig14245:972..1536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size567
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.9243963-CDS-H-canaliculatus_F_contig14245:971..14571622929173.9243963-CDS-H-canaliculatus_F_contig14245:971..1457Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14245 972..1457 +
1696845706.2624578-CDS-H-canaliculatus_F_contig14245:971..14571696845706.2624578-CDS-H-canaliculatus_F_contig14245:971..1457Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14245 972..1457 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.9391494-UTR-H-canaliculatus_F_contig14245:1457..15361622929173.9391494-UTR-H-canaliculatus_F_contig14245:1457..1536Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14245 1458..1536 +
1696845706.2719476-UTR-H-canaliculatus_F_contig14245:1457..15361696845706.2719476-UTR-H-canaliculatus_F_contig14245:1457..1536Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14245 1458..1536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14245.3336.1prot_H-canaliculatus_F_contig14245.3336.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14245 972..1457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14245.3336.1

>prot_H-canaliculatus_F_contig14245.3336.1 ID=prot_H-canaliculatus_F_contig14245.3336.1|Name=mRNA_H-canaliculatus_F_contig14245.3336.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=162bp
LRFRCGNSAENRVAGVSSRLTGGSLRPSPLCLREHICGTFAAAVAELSKQ
SRSTRRWTPSSPQLATSTNIRCALFHAVVCSRPFAGRLPLLLPTKSVLWS
FPCTRSWRIPFASEARPANSPYSGGPVLGAKRATARKEQTFSPRNILPMP
TPSGPTRHGET*
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mRNA from alignment at H-canaliculatus_F_contig14245:972..1536+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14245.3336.1 ID=mRNA_H-canaliculatus_F_contig14245.3336.1|Name=mRNA_H-canaliculatus_F_contig14245.3336.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=565bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14245:972..1536+ (Hapterophycus canaliculatus Oshoro5f female)
TTACGCTTCAGGTGTGGTAACAGTGCAGAGAATCGTGTGGCCGGGGTTTC
CTCACGTTTGACCGGCGGCTCTCTCCGGCCCTCACCACTCTGCCTTCGCG
AGCACATTTGCGGCACATTTGCAGCGGCGGTAGCAGAACTCTCCAAACAG
TCGCGATCGACGCGAAGATGGACCCCATCCTCACCCCAGCTTGCTACAAG
CACAAACATTCGATGCGCCCTGTTTCATGCGGTTGTTTGCTCTCGGCCTT
TTGCGGGGAGGCTTCCCCTGCTGCTGCCTACGAAATCTGTGCTTTGGAGC
TTTCCGTGCACTCGCTCGTGGCGCATCCCATTCGCGTCGGAAGCTCGCCC
CGCCAATTCCCCTTACAGCGGCGGGCCCGTCCTGGGCGCGAAAAGGGCGA
CGGCGCGCAAAGAACAAACGTTCTCACCGCGAAATATACTCCCTATGCCG
ACTCCGTCGGGCCCCACGAGGCACGGTGAAACCTAGTCACCGCCACCTCC
CGCCGCCCTATCCACGGAGCCCCCACCAAGTCCTTTCGCATCCTAACCCT
TGTTCTCTCTGTACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14245:972..1536+

>mRNA_H-canaliculatus_F_contig14245.3336.1 ID=mRNA_H-canaliculatus_F_contig14245.3336.1|Name=mRNA_H-canaliculatus_F_contig14245.3336.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=972bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14245:972..1536+ (Hapterophycus canaliculatus Oshoro5f female)
TTACGCTTCAGGTGTGGTAACAGTGCAGAGAATCGTGTGGCCGGGGTTTC
CTCACGTTTGACCGGCGGCTCTCTCCGGCCCTCACCACTCTGCCTTCGCG
AGCACATTTGCGGCACATTTGCAGCGGCGGTAGCAGAACTCTCCAAACAG
TCGCGATCGACGCGAAGATGGACCCCATCCTCACCCCAGCTTGCTACAAG
CACAAACATTCGATGCGCCCTGTTTCATGCGGTTGTTTGCTCTCGGCCTT
TTGCGGGGAGGCTTCCCCTGCTGCTGCCTACGAAATCTGTGCTTTGGAGC
TTTCCGTGCACTCGCTCGTGGCGCATCCCATTCGCGTCGGAAGCTCGCCC
CGCCAATTCCCCTTACAGCGGCGGGCCCGTCCTGGGCGCGAAAAGGGCGA
CGGCGCGCAAAGAACAAACGTTCTCACCGCGAAATATACTCCCTATGCCG
ACTCCGTCGGGCCCCACGAGGCACGGTGAAACCTAGTTACGCTTCAGGTG
TGGTAACAGTGCAGAGAATCGTGTGGCCGGGGTTTCCTCACGTTTGACCG
GCGGCTCTCTCCGGCCCTCACCACTCTGCCTTCGCGAGCACATTTGCGGC
ACATTTGCAGCGGCGGTAGCAGAACTCTCCAAACAGTCGCGATCGACGCG
AAGATGGACCCCATCCTCACCCCAGCTTGCTACAAGCACAAACATTCGAT
GCGCCCTGTTTCATGCGGTTGTTTGCTCTCGGCCTTTTGCGGGGAGGCTT
CCCCTGCTGCTGCCTACGAAATCTGTGCTTTGGAGCTTTCCGTGCACTCG
CTCGTGGCGCATCCCATTCGCGTCGGAAGCTCGCCCCGCCAATTCCCCTT
ACAGCGGCGGGCCCGTCCTGGGCGCGAAAAGGGCGACGGCGCGCAAAGAA
CAAACGTTCTCACCGCGAAATATACTCCCTATGCCGACTCCGTCGGGCCC
CACGAGGCACGGTGAAACCTAG
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