mRNA_H-canaliculatus_F_contig14245.3335.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: D7FS04_ECTSI (Triose phosphate/phosphate translocator, non-green plastid, chloroplast, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS04_ECTSI) HSP 1 Score: 425 bits (1092), Expect = 3.200e-143 Identity = 259/396 (65.40%), Postives = 291/396 (73.48%), Query Frame = 1
Query: 1 TTKDAGALVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVKNIGPAAARRRDAATKTKNNERAGMSPPRAAS-SFLRSTGGAMVSSAAADAFVNNPIARRIRSAAALADTRAGAATAATAGLRRSGLADLAPGDTFRLCSVVGAALLIPAAAYFERDSWPRLWRGAADAAAALVGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGSAMAAVDIAEAAAAMVARGEWAEAFRRALLSGVCFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIGAGAFVFGGDLGGARGALGSGLAVLGVLAYSVAKARCQPTQDHG 1185
T +D LVPMG LHAVSHLTVVLGLGAGAVSFLQTVKA+EACFTALLSYLFLGQT+PLPVYLTLLPVV GVALTCCGQGLRFSW+ LLSALVS+L NA+ NVLIVKNIGPAAA AA + +++ + SPPR++S SFLR T ++AA +F++NP+AR SA+ALA+TRAG A T R SGLA LA GDT+RL +VVGAAL+IPAAAY ERDSWPRLWR A DA AALVGR XXXXXX +AEAA ARG+WAEAFRRA+L+GV FNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVI AGAF FGGDLGGARG LGS LAV+GVL YS++KARC+ T G
Sbjct: 76 TRQDLAVLVPMGFLHAVSHLTVVLGLGAGAVSFLQTVKAAEACFTALLSYLFLGQTMPLPVYLTLLPVVAGVALTCCGQGLRFSWVGLLSALVSHLPNAMGNVLIVKNIGPAAA----AAGRRRSSLKTEASPPRSSSASFLRPTA---ANTAADPSFLSNPVAR---SASALANTRAGG-EATTRRRRESGLASLARGDTYRLLTVVGAALIIPAAAYMERDSWPRLWRAAMDATAALVGRTTSADGSPPLLGEALLSAAGSGGDSXXXXXXRVSA----------------VAEAAVEAAARGQWAEAFRRAVLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVLGSALAVIGVLGYSLSKARCKTTTGSG 444
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A6H5KHZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHZ8_9PHAE) HSP 1 Score: 357 bits (915), Expect = 1.290e-115 Identity = 226/391 (57.80%), Postives = 252/391 (64.45%), Query Frame = 1
Query: 1 TTKDAGALVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVKNIGPAAARRRDAATKTKNNERAGMSPPRAASSFLRSTGGAMVSSAAADAFVNNPIARRIRSAAALADTRAGAATAATAGLRRSGLADLAPGDTFRLCSVVGAALLIPAAAYFERDSWPRLWRGAADAAAALVGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGSAMAAVDIAEAAAAMVARGEWAEAFRRALLSGVCFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIGAGAFVFGGDLGGARGALGSGLAVLGVLAYSVAKARCQPT 1173
T +D LVPMG LHAVSHLTVVLGLGAGAVSFLQTVKA+EACFTALLSYLFLGQT+PLPVYLTLLPVV GVALTCCGQGLRFS L + +S SP + SSFLR T ++A +F++NP+AR SA+ALA+TRAG A T R SGLA LA GDT+RL +VVGAAL+IPAAAY ERDSWPRLWR A DA AALVGR AGG A +AEAA RG+WAEAFRRA+L+GV FNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVI AGAF FGGDLGGARG +GS LAV+GVL Y+++KARC T
Sbjct: 181 TRQDLAVLVPMGFLHAVSHLTVVLGLGAGAVSFLQTVKAAEACFTALLSYLFLGQTMPLPVYLTLLPVVAGVALTCCGQGLRFS-------LETEVS----------------------------------SPRSSGSSFLRPTA---ANTAGDPSFLSNPVAR---SASALANTRAGG-EATTQRSRESGLASLARGDTYRLLTVVGAALIIPAAAYMERDSWPRLWRAAMDATAALVGRRTSADGLPPLPGEALLSAVGSVEDSSA--------------AGGRVSA---VAEAAV----RGQWAEAFRRAVLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVMGSALAVIGVLGYNLSKARCNTT 502
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A836CHH7_9STRA (Plastidic triose-phosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH7_9STRA) HSP 1 Score: 111 bits (277), Expect = 2.140e-23 Identity = 105/378 (27.78%), Postives = 150/378 (39.68%), Query Frame = 1
Query: 22 LVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVKNIGPAAARRRDAATKTKNNERAGMSPPRAASSFLRSTGGAMVSSAAADAFVNNPIARRIRSAAALADTRAGAATAATAGLRRSGLADLAPGDTFRLCSVVGAALLIPAAAYFERDSWPRLWRGAADAAAALVGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGSAMAAVDIAEAAAAMVARGEWAEAFRRALLSGVCFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIGAGAFVFGGDLGGARGALGSGLAVLGVLAYSVAK 1155
L P+GL HA+SHL+ V+GLGAG+VSF VKA+E FTAL S +FL Q P+PVYL+L+PVV GVAL + L FSW AL A+ SN++ + R +L +++G R G T GAA + + + +++ A+L+P A E + W AA L G + ALLSG+ F L+ ++ F L +HPV HAVGNT+KR+ +I +G +FG + G +GS LA++GVL +S+ K
Sbjct: 150 LSPIGLCHAISHLSAVIGLGAGSVSFTHIVKAAEPFFTALFSAIFLKQYFPVPVYLSLVPVVAGVALASLKE-LNFSWTALCGAMGSNVAASSRAILAKRSMG-------------------------------RPKG-----------------------------TNMGAA------------------NLYGVLTILATAMLVPVAGVLEGPKFSAKWD-----AALLKGYSQDAIT---------------------------------------------------------------KHALLSGLYFYLYNEVAFLALDAVHPVVHAVGNTLKRVFIIASGVILFGNKIT-PLGMVGSSLAIVGVLIFSLVK 379
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A6H5KC08_9PHAE (TPT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC08_9PHAE) HSP 1 Score: 101 bits (252), Expect = 5.500e-20 Identity = 99/388 (25.52%), Postives = 142/388 (36.60%), Query Frame = 1
Query: 1 TTKDAGALVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVKNIGPAAARRRDAATKTKNNERAGMSPPRAASSFLRSTGGAMVSSAAADAFVNNPIARRIRSAAALADTRAGAATAATAGLRRSGLADLAPGDTFRLCSVVGAALLIPAAAYFERDSWPRLWRGAADAAAALVGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGSAMAAVDIAEAAAAMVARGEWAEAFRRALLSGVCFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIGAGAFVFGGDLGGARGALGSGLAVLGVLAYSVAKARC 1164
T + L P+ H +SH+ V+GLGAGAVSF+ VKA+E FTAL S +FLGQ VYLTL+PVV GVAL + L F W AL A+ SNL+ + R +L +++G + +++P + + + +++ +A+L+P +A E LW +G E + SGV F L+ ++ FR LG +HPVTHAVGNT KR+ +I VF L A+GS +A+ GVL YS+ K C
Sbjct: 145 TMANVKGLSPIAACHMLSHVCAVIGLGAGAVSFVHIVKAAEPLFTALFSAIFLGQIFSPLVYLTLVPVVAGVALASLKE-LDFKWAALGGAMGSNLAASTRAILSKRSMGMDMGK------------------------------------------------------------------------------NMSPANLYAVLTIMASAMLLPLSAIVEGPKIQELWESTVTTPE------------------------------------------------------------------KGN--EIIYNTVASGVFFYLYNEVAFRCLGVVHPVTHAVGNTFKRVFLIATSIIVFKSKLT-PLAAMGSFMAIAGVLLYSLTKEWC 384
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A7S4AKJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AKJ9_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 3.050e-19 Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 7 KDAGALVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVK 321
+ L P+ L H H+ V+ LGAGAVSF VKASE T L++YLFLGQ LPLPVYLTLLP++ GVA+ + L F+ LAL SA++SN+S++ R VL K
Sbjct: 13 SELKTLFPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVITCLMNYLFLGQVLPLPVYLTLLPIIGGVAIASMKE-LSFTVLALASAMLSNVSSSARGVLSKK 116
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A1E7FFK1_9STRA (TPT-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFK1_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.970e-18 Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query: 22 LVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVK 321
L+P+ L H H+ V+ LGAGAVSF VKASE T LL+YLFLGQ LPLPVYLTLLP++ GVA+ + L F+ LAL SA++SN+S++ R VL K
Sbjct: 150 LIPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCLLNYLFLGQVLPLPVYLTLLPIIGGVAIASMKE-LSFTVLALASAMLSNVSSSARGVLSKK 248
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A7S4AKG9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AKG9_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 7.370e-18 Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 7 KDAGALVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVK 321
+ L P+ L H H+ V+ LGAGAVSF VKASE T L++YLFLGQ LPLPVYLTLLP++ GVA+ + L F+ LAL SA++SN+S++ R VL K
Sbjct: 141 SELKTLFPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCLMNYLFLGQVLPLPVYLTLLPIIGGVAIASMKE-LSFTVLALASAMLSNVSSSARGVLSKK 244
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A7S4EKD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EKD9_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 7.370e-18 Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 7 KDAGALVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVK 321
+ L P+ L H H+ V+ LGAGAVSF VKASE T L++YLFLGQ LPLPVYLTLLP++ GVA+ + L F+ LAL SA++SN+S++ R VL K
Sbjct: 141 SELKTLFPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCLMNYLFLGQVLPLPVYLTLLPIIGGVAIASMKE-LSFTVLALASAMLSNVSSSARGVLSKK 244
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A448Z6Z4_9STRA (TPT domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6Z4_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 8.370e-18 Identity = 54/105 (51.43%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 7 KDAGALVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVK 321
+ L P+ L H H+ V+ LGAGAVSF VKASE T L++YLFLGQ LPLPVY+TLLP++ GVA+ + L F+ LAL SA++SN+S++ R VL K
Sbjct: 140 SELKTLFPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCLMNYLFLGQVLPLPVYMTLLPIIGGVAIASMKE-LSFTXLALASAMLSNVSSSARGVLSKK 243
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A835ZDI5_9STRA (Triose-phosphate transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI5_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 8.190e-17 Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 28 PMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVKNIGPAAA 342
P+ LH SH++ V+GLGAGAV F+ VKA E FTA LS L L + +PLPVY +LLPVV GVAL + L FSW+A A+ SN++ A R VL K +G A
Sbjct: 88 PLAALHTTSHISAVIGLGAGAVGFVHVVKALEPLFTAALSALLLQKFMPLPVYASLLPVVGGVALASMKE-LSFSWVAFAGAMGSNVAAATRGVLAKKQMGQVQA 191 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig14245.3335.1 >prot_H-canaliculatus_F_contig14245.3335.1 ID=prot_H-canaliculatus_F_contig14245.3335.1|Name=mRNA_H-canaliculatus_F_contig14245.3335.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=391bp MGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPback to top mRNA from alignment at H-canaliculatus_F_contig14245:232..2655+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig14245.3335.1 ID=mRNA_H-canaliculatus_F_contig14245.3335.1|Name=mRNA_H-canaliculatus_F_contig14245.3335.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2424bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14245:232..2655+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14245:232..2655+ >mRNA_H-canaliculatus_F_contig14245.3335.1 ID=mRNA_H-canaliculatus_F_contig14245.3335.1|Name=mRNA_H-canaliculatus_F_contig14245.3335.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2346bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14245:232..2655+ (Hapterophycus canaliculatus Oshoro5f female)back to top |