mRNA_H-canaliculatus_F_contig14245.3335.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14245.3335.1
Unique NamemRNA_H-canaliculatus_F_contig14245.3335.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: D7FS04_ECTSI (Triose phosphate/phosphate translocator, non-green plastid, chloroplast, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS04_ECTSI)

HSP 1 Score: 425 bits (1092), Expect = 3.200e-143
Identity = 259/396 (65.40%), Postives = 291/396 (73.48%), Query Frame = 1
Query:    1 TTKDAGALVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVKNIGPAAARRRDAATKTKNNERAGMSPPRAAS-SFLRSTGGAMVSSAAADAFVNNPIARRIRSAAALADTRAGAATAATAGLRRSGLADLAPGDTFRLCSVVGAALLIPAAAYFERDSWPRLWRGAADAAAALVGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGSAMAAVDIAEAAAAMVARGEWAEAFRRALLSGVCFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIGAGAFVFGGDLGGARGALGSGLAVLGVLAYSVAKARCQPTQDHG 1185
            T +D   LVPMG LHAVSHLTVVLGLGAGAVSFLQTVKA+EACFTALLSYLFLGQT+PLPVYLTLLPVV GVALTCCGQGLRFSW+ LLSALVS+L NA+ NVLIVKNIGPAAA    AA + +++ +   SPPR++S SFLR T     ++AA  +F++NP+AR   SA+ALA+TRAG   A T   R SGLA LA GDT+RL +VVGAAL+IPAAAY ERDSWPRLWR A DA AALVGR                         XXXXXX                    +AEAA    ARG+WAEAFRRA+L+GV FNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVI AGAF FGGDLGGARG LGS LAV+GVL YS++KARC+ T   G
Sbjct:   76 TRQDLAVLVPMGFLHAVSHLTVVLGLGAGAVSFLQTVKAAEACFTALLSYLFLGQTMPLPVYLTLLPVVAGVALTCCGQGLRFSWVGLLSALVSHLPNAMGNVLIVKNIGPAAA----AAGRRRSSLKTEASPPRSSSASFLRPTA---ANTAADPSFLSNPVAR---SASALANTRAGG-EATTRRRRESGLASLARGDTYRLLTVVGAALIIPAAAYMERDSWPRLWRAAMDATAALVGRTTSADGSPPLLGEALLSAAGSGGDSXXXXXXRVSA----------------VAEAAVEAAARGQWAEAFRRAVLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVLGSALAVIGVLGYSLSKARCKTTTGSG 444          
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A6H5KHZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHZ8_9PHAE)

HSP 1 Score: 357 bits (915), Expect = 1.290e-115
Identity = 226/391 (57.80%), Postives = 252/391 (64.45%), Query Frame = 1
Query:    1 TTKDAGALVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVKNIGPAAARRRDAATKTKNNERAGMSPPRAASSFLRSTGGAMVSSAAADAFVNNPIARRIRSAAALADTRAGAATAATAGLRRSGLADLAPGDTFRLCSVVGAALLIPAAAYFERDSWPRLWRGAADAAAALVGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGSAMAAVDIAEAAAAMVARGEWAEAFRRALLSGVCFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIGAGAFVFGGDLGGARGALGSGLAVLGVLAYSVAKARCQPT 1173
            T +D   LVPMG LHAVSHLTVVLGLGAGAVSFLQTVKA+EACFTALLSYLFLGQT+PLPVYLTLLPVV GVALTCCGQGLRFS       L + +S                                  SP  + SSFLR T     ++A   +F++NP+AR   SA+ALA+TRAG   A T   R SGLA LA GDT+RL +VVGAAL+IPAAAY ERDSWPRLWR A DA AALVGR                                         AGG   A   +AEAA     RG+WAEAFRRA+L+GV FNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVI AGAF FGGDLGGARG +GS LAV+GVL Y+++KARC  T
Sbjct:  181 TRQDLAVLVPMGFLHAVSHLTVVLGLGAGAVSFLQTVKAAEACFTALLSYLFLGQTMPLPVYLTLLPVVAGVALTCCGQGLRFS-------LETEVS----------------------------------SPRSSGSSFLRPTA---ANTAGDPSFLSNPVAR---SASALANTRAGG-EATTQRSRESGLASLARGDTYRLLTVVGAALIIPAAAYMERDSWPRLWRAAMDATAALVGRRTSADGLPPLPGEALLSAVGSVEDSSA--------------AGGRVSA---VAEAAV----RGQWAEAFRRAVLAGVSFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIAAGAFAFGGDLGGARGVMGSALAVIGVLGYNLSKARCNTT 502          
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A836CHH7_9STRA (Plastidic triose-phosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.140e-23
Identity = 105/378 (27.78%), Postives = 150/378 (39.68%), Query Frame = 1
Query:   22 LVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVKNIGPAAARRRDAATKTKNNERAGMSPPRAASSFLRSTGGAMVSSAAADAFVNNPIARRIRSAAALADTRAGAATAATAGLRRSGLADLAPGDTFRLCSVVGAALLIPAAAYFERDSWPRLWRGAADAAAALVGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGSAMAAVDIAEAAAAMVARGEWAEAFRRALLSGVCFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIGAGAFVFGGDLGGARGALGSGLAVLGVLAYSVAK 1155
            L P+GL HA+SHL+ V+GLGAG+VSF   VKA+E  FTAL S +FL Q  P+PVYL+L+PVV GVAL    + L FSW AL  A+ SN++ + R +L  +++G                               R  G                             T  GAA                  + + + +++  A+L+P A   E   +   W      AA L G                                                                      + ALLSG+ F L+ ++ F  L  +HPV HAVGNT+KR+ +I +G  +FG  +    G +GS LA++GVL +S+ K
Sbjct:  150 LSPIGLCHAISHLSAVIGLGAGSVSFTHIVKAAEPFFTALFSAIFLKQYFPVPVYLSLVPVVAGVALASLKE-LNFSWTALCGAMGSNVAASSRAILAKRSMG-------------------------------RPKG-----------------------------TNMGAA------------------NLYGVLTILATAMLVPVAGVLEGPKFSAKWD-----AALLKGYSQDAIT---------------------------------------------------------------KHALLSGLYFYLYNEVAFLALDAVHPVVHAVGNTLKRVFIIASGVILFGNKIT-PLGMVGSSLAIVGVLIFSLVK 379          
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A6H5KC08_9PHAE (TPT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC08_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.500e-20
Identity = 99/388 (25.52%), Postives = 142/388 (36.60%), Query Frame = 1
Query:    1 TTKDAGALVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVKNIGPAAARRRDAATKTKNNERAGMSPPRAASSFLRSTGGAMVSSAAADAFVNNPIARRIRSAAALADTRAGAATAATAGLRRSGLADLAPGDTFRLCSVVGAALLIPAAAYFERDSWPRLWRGAADAAAALVGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGSAMAAVDIAEAAAAMVARGEWAEAFRRALLSGVCFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIGAGAFVFGGDLGGARGALGSGLAVLGVLAYSVAKARC 1164
            T  +   L P+   H +SH+  V+GLGAGAVSF+  VKA+E  FTAL S +FLGQ     VYLTL+PVV GVAL    + L F W AL  A+ SNL+ + R +L  +++G    +                                                                              +++P + + + +++ +A+L+P +A  E      LW                                                                          +G   E     + SGV F L+ ++ FR LG +HPVTHAVGNT KR+ +I     VF   L     A+GS +A+ GVL YS+ K  C
Sbjct:  145 TMANVKGLSPIAACHMLSHVCAVIGLGAGAVSFVHIVKAAEPLFTALFSAIFLGQIFSPLVYLTLVPVVAGVALASLKE-LDFKWAALGGAMGSNLAASTRAILSKRSMGMDMGK------------------------------------------------------------------------------NMSPANLYAVLTIMASAMLLPLSAIVEGPKIQELWESTVTTPE------------------------------------------------------------------KGN--EIIYNTVASGVFFYLYNEVAFRCLGVVHPVTHAVGNTFKRVFLIATSIIVFKSKLT-PLAAMGSFMAIAGVLLYSLTKEWC 384          
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A7S4AKJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AKJ9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.050e-19
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    7 KDAGALVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVK 321
             +   L P+ L H   H+  V+ LGAGAVSF   VKASE   T L++YLFLGQ LPLPVYLTLLP++ GVA+    + L F+ LAL SA++SN+S++ R VL  K
Sbjct:   13 SELKTLFPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVITCLMNYLFLGQVLPLPVYLTLLPIIGGVAIASMKE-LSFTVLALASAMLSNVSSSARGVLSKK 116          
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A1E7FFK1_9STRA (TPT-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFK1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.970e-18
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   22 LVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVK 321
            L+P+ L H   H+  V+ LGAGAVSF   VKASE   T LL+YLFLGQ LPLPVYLTLLP++ GVA+    + L F+ LAL SA++SN+S++ R VL  K
Sbjct:  150 LIPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCLLNYLFLGQVLPLPVYLTLLPIIGGVAIASMKE-LSFTVLALASAMLSNVSSSARGVLSKK 248          
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A7S4AKG9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AKG9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 7.370e-18
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    7 KDAGALVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVK 321
             +   L P+ L H   H+  V+ LGAGAVSF   VKASE   T L++YLFLGQ LPLPVYLTLLP++ GVA+    + L F+ LAL SA++SN+S++ R VL  K
Sbjct:  141 SELKTLFPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCLMNYLFLGQVLPLPVYLTLLPIIGGVAIASMKE-LSFTVLALASAMLSNVSSSARGVLSKK 244          
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A7S4EKD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EKD9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 7.370e-18
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    7 KDAGALVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVK 321
             +   L P+ L H   H+  V+ LGAGAVSF   VKASE   T L++YLFLGQ LPLPVYLTLLP++ GVA+    + L F+ LAL SA++SN+S++ R VL  K
Sbjct:  141 SELKTLFPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCLMNYLFLGQVLPLPVYLTLLPIIGGVAIASMKE-LSFTVLALASAMLSNVSSSARGVLSKK 244          
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A448Z6Z4_9STRA (TPT domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6Z4_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 8.370e-18
Identity = 54/105 (51.43%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    7 KDAGALVPMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVK 321
             +   L P+ L H   H+  V+ LGAGAVSF   VKASE   T L++YLFLGQ LPLPVY+TLLP++ GVA+    + L F+ LAL SA++SN+S++ R VL  K
Sbjct:  140 SELKTLFPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCLMNYLFLGQVLPLPVYMTLLPIIGGVAIASMKE-LSFTXLALASAMLSNVSSSARGVLSKK 243          
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Match: A0A835ZDI5_9STRA (Triose-phosphate transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 8.190e-17
Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   28 PMGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLPVYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVKNIGPAAA 342
            P+  LH  SH++ V+GLGAGAV F+  VKA E  FTA LS L L + +PLPVY +LLPVV GVAL    + L FSW+A   A+ SN++ A R VL  K +G   A
Sbjct:   88 PLAALHTTSHISAVIGLGAGAVGFVHVVKALEPLFTAALSALLLQKFMPLPVYASLLPVVGGVALASMKE-LSFSWVAFAGAMGSNVAAATRGVLAKKQMGQVQA 191          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14245.3335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS04_ECTSI3.200e-14365.40Triose phosphate/phosphate translocator, non-green... [more]
A0A6H5KHZ8_9PHAE1.290e-11557.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CHH7_9STRA2.140e-2327.78Plastidic triose-phosphate/phosphate translocator ... [more]
A0A6H5KC08_9PHAE5.500e-2025.52TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S4AKJ9_9STRA3.050e-1952.38Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A1E7FFK1_9STRA1.970e-1856.00TPT-domain-containing protein n=1 Tax=Fragilariops... [more]
A0A7S4AKG9_9STRA7.370e-1852.38Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S4EKD9_9STRA7.370e-1852.38Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A448Z6Z4_9STRA8.370e-1851.43TPT domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A835ZDI5_9STRA8.190e-1751.43Triose-phosphate transporter family-domain-contain... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14245contigH-canaliculatus_F_contig14245:232..2655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score411.0
Seed ortholog evalue6.2e-112
Seed eggNOG ortholog2880.D7FS04
Preferred nameSLC35E3
KEGG koko:K06643,ko:K15283,ko:K15285
KEGG TC2.A.7.9
KEGG Pathwayko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
EC2.3.2.27
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04121,ko04131
Hectar predicted targeting categorysignal peptide
Exons3
Model size1295
Cds size1173
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14245.3335.1prot_H-canaliculatus_F_contig14245.3335.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14245 262..2563 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.9790218-UTR-H-canaliculatus_F_contig14245:231..2611622929173.9790218-UTR-H-canaliculatus_F_contig14245:231..261Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14245 232..261 +
1696845706.283805-UTR-H-canaliculatus_F_contig14245:231..2611696845706.283805-UTR-H-canaliculatus_F_contig14245:231..261Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14245 232..261 +
1622929174.0367415-UTR-H-canaliculatus_F_contig14245:2563..26551622929174.0367415-UTR-H-canaliculatus_F_contig14245:2563..2655Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14245 2564..2655 +
1696845706.3274894-UTR-H-canaliculatus_F_contig14245:2563..26551696845706.3274894-UTR-H-canaliculatus_F_contig14245:2563..2655Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14245 2564..2655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.9944835-CDS-H-canaliculatus_F_contig14245:261..3961622929173.9944835-CDS-H-canaliculatus_F_contig14245:261..396Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14245 262..396 +
1696845706.2956767-CDS-H-canaliculatus_F_contig14245:261..3961696845706.2956767-CDS-H-canaliculatus_F_contig14245:261..396Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14245 262..396 +
1622929174.0087614-CDS-H-canaliculatus_F_contig14245:896..9821622929174.0087614-CDS-H-canaliculatus_F_contig14245:896..982Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14245 897..982 +
1696845706.305086-CDS-H-canaliculatus_F_contig14245:896..9821696845706.305086-CDS-H-canaliculatus_F_contig14245:896..982Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14245 897..982 +
1622929174.0197744-CDS-H-canaliculatus_F_contig14245:1611..25631622929174.0197744-CDS-H-canaliculatus_F_contig14245:1611..2563Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14245 1612..2563 +
1696845706.3150403-CDS-H-canaliculatus_F_contig14245:1611..25631696845706.3150403-CDS-H-canaliculatus_F_contig14245:1611..2563Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14245 1612..2563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14245.3335.1

>prot_H-canaliculatus_F_contig14245.3335.1 ID=prot_H-canaliculatus_F_contig14245.3335.1|Name=mRNA_H-canaliculatus_F_contig14245.3335.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=391bp
MGLLHAVSHLTVVLGLGAGAVSFLQTVKASEACFTALLSYLFLGQTLPLP
VYLTLLPVVLGVALTCCGQGLRFSWLALLSALVSNLSNALRNVLIVKNIG
PAAARRRDAATKTKNNERAGMSPPRAASSFLRSTGGAMVSSAAADAFVNN
PIARRIRSAAALADTRAGAATAATAGLRRSGLADLAPGDTFRLCSVVGAA
LLIPAAAYFERDSWPRLWRGAADAAAALVGRAGGGGGGGCGGSPPPFEEA
LRSGVEAAAAAAVAAAEAGGAEAGGSAMAAVDIAEAAAAMVARGEWAEAF
RRALLSGVCFNLFYDLTFRLLGQLHPVTHAVGNTIKRIVVIGAGAFVFGG
DLGGARGALGSGLAVLGVLAYSVAKARCQPTQDHGDRSSR*
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mRNA from alignment at H-canaliculatus_F_contig14245:232..2655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14245.3335.1 ID=mRNA_H-canaliculatus_F_contig14245.3335.1|Name=mRNA_H-canaliculatus_F_contig14245.3335.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2424bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14245:232..2655+ (Hapterophycus canaliculatus Oshoro5f female)
ACAACAAAGGACGCCGGTGCGCTCGTCCCCATGGGTCTCCTGCACGCCGT GTCCCACCTGACGGTCGTCCTGGGCCTGGGCGCAGGGGCCGTGTCGTTCT TACAGACCGTGAAGGCATCGGAGGCCTGCTTCACGGCGCTCTTGTCGTAC CTCTTCCTGGGACAGGTGAGGCGGCGAGGCGTGCAGGCACGCACACGATC CGCCCGGGAGAGGGGCCGATTGATGCTCGCTGCTAGCAGAGGAGACGCAG GGGTACTTGACCAGGCTGCTTGCCGCGTGTGGTTTGTTTTTGCTCCCTGG GGGTAGACGAAGGGGGAAGGGTGTTAGGCAGGCAGGTAAATGAGAAGGCC CTTCGAGAGCCGCCGTGGGCGTGCTTTCTCCGATCCTCTGTCGACAGAAC CCGAAGTACCGGACGATTTATCGAATGTTTTAGCGAAGCGGGAGTCTGCC CCCCGCCCCATAGGCACCGCCGCTTCCTCCCACACGTCCCTTTTGAATTT CACGTGTTTCCCGCAGCTTTGTTTGCTCGTTTGCTTTACAAGTACCGCCC CCTCGCCTGCCTCCATAGCCGGTTCCTCGTGTACAACTGAGGCGTTTTTT GTACCCGCACCGCGCTGCTCGTCTCCACGCCACCTCTTTTTCTCTCCCAT CCCGCTGTTGAACAGACGTTGCCCTTACCTGTGTACCTGACGCTGCTACC CGTGGTGCTGGGCGTTGCGCTCACCTGCTGCGGCCAGGGGTTACGCTTCA GGTGTGGTAACAGTGCAGAGAATCGTGTGGCCGGGGTTTCCTCACGTTTG ACCGGCGGCTCTCTCCGGCCCTCACCACTCTGCCTTCGCGAGCACATTTG CGGCACATTTGCAGCGGCGGTAGCAGAACTCTCCAAACAGTCGCGATCGA CGCGAAGATGGACCCCATCCTCACCCCAGCTTGCTACAAGCACAAACATT CGATGCGCCCTGTTTCATGCGGTTGTTTGCTCTCGGCCTTTTGCGGGGAG GCTTCCCCTGCTGCTGCCTACGAAATCTGTGCTTTGGAGCTTTCCGTGCA CTCGCTCGTGGCGCATCCCATTCGCGTCGGAAGCTCGCCCCGCCAATTCC CCTTACAGCGGCGGGCCCGTCCTGGGCGCGAAAAGGGCGACGGCGCGCAA AGAACAAACGTTCTCACCGCGAAATATACTCCCTATGCCGACTCCGTCGG GCCCCACGAGGCACGGTGAAACCTAGTCACCGCCACCTCCCGCCGCCCTA TCCACGGAGCCCCCACCAAGTCCTTTCGCATCCTAACCCTTGTTCTCTCT GTACCCCACCTCAACCTCTGCCGCCGCCGCCGCCGGCTGCTGCTGCTGCT CCGCGCGTGCGCGCCGGCCCTCACCGGCAGCTGGTTGGCCCTTCTGTCGG CCCTCGTGTCCAACCTGAGCAACGCGTTGAGGAATGTGCTGATCGTCAAG AACATCGGCCCCGCCGCGGCCCGCCGGCGAGACGCCGCGACGAAGACCAA GAACAACGAGCGGGCCGGGATGTCACCCCCGCGCGCCGCGAGCTCCTTCC TGCGGTCGACCGGCGGGGCTATGGTCTCCTCCGCCGCCGCTGACGCGTTC GTCAACAACCCGATAGCCAGGAGGATAAGGAGCGCCGCGGCCCTCGCCGA CACGAGAGCGGGGGCGGCGACGGCGGCGACGGCGGGGCTTCGGCGGAGCG GACTCGCGGACCTGGCCCCGGGGGACACCTTCCGCCTCTGCAGCGTGGTC GGGGCGGCGCTGCTGATCCCGGCGGCGGCGTACTTCGAGCGCGACTCCTG GCCGAGGCTCTGGCGAGGGGCGGCCGATGCTGCCGCCGCTCTAGTAGGGC GGGCGGGCGGCGGCGGCGGCGGCGGCTGCGGCGGTAGTCCGCCGCCGTTC GAGGAAGCCCTGCGAAGCGGAGTGGAAGCGGCGGCAGCGGCAGCGGTAGC GGCAGCCGAGGCGGGTGGAGCGGAAGCTGGTGGCAGTGCGATGGCGGCTG TTGACATAGCGGAAGCGGCGGCGGCGATGGTGGCGAGGGGAGAATGGGCC GAGGCGTTCCGGCGCGCGCTGCTGTCGGGCGTCTGCTTCAACCTTTTCTA CGACCTAACCTTCAGGTTGCTGGGGCAGCTCCACCCGGTCACGCACGCGG TGGGCAATACGATCAAGAGGATCGTGGTCATCGGTGCGGGTGCGTTCGTG TTCGGGGGGGACCTGGGGGGAGCGAGGGGGGCGTTGGGGAGCGGGCTGGC TGTTCTTGGCGTCCTGGCGTACAGTGTAGCGAAGGCGAGGTGTCAGCCGA CGCAGGACCACGGCGACCGAAGTTCTCGATGAACGGCGGTTTGAGTGCCT GCCTGAAGCGCTGGAGAGGCAGAGGGATCGTGGAGGTCGGTCCCCTGGAG AATGAGGCGGCCGGCCGTGTCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14245:232..2655+

>mRNA_H-canaliculatus_F_contig14245.3335.1 ID=mRNA_H-canaliculatus_F_contig14245.3335.1|Name=mRNA_H-canaliculatus_F_contig14245.3335.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2346bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14245:232..2655+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTCTCCTGCACGCCGTGTCCCACCTGACGGTCGTCCTGGGCCTGGG
CGCAGGGGCCGTGTCGTTCTTACAGACCGTGAAGGCATCGGAGGCCTGCT
TCACGGCGCTCTTGTCGTACCTCTTCCTGGGACAGATGGGTCTCCTGCAC
GCCGTGTCCCACCTGACGGTCGTCCTGGGCCTGGGCGCAGGGGCCGTGTC
GTTCTTACAGACCGTGAAGGCATCGGAGGCCTGCTTCACGGCGCTCTTGT
CGTACCTCTTCCTGGGACAGACGTTGCCCTTACCTGTGTACCTGACGCTG
CTACCCGTGGTGCTGGGCGTTGCGCTCACCTGCTGCGGCCAGGGGTTACG
CTTCAGACGTTGCCCTTACCTGTGTACCTGACGCTGCTACCCGTGGTGCT
GGGCGTTGCGCTCACCTGCTGCGGCCAGGGGTTACGCTTCAGCTGGTTGG
CCCTTCTGTCGGCCCTCGTGTCCAACCTGAGCAACGCGTTGAGGAATGTG
CTGATCGTCAAGAACATCGGCCCCGCCGCGGCCCGCCGGCGAGACGCCGC
GACGAAGACCAAGAACAACGAGCGGGCCGGGATGTCACCCCCGCGCGCCG
CGAGCTCCTTCCTGCGGTCGACCGGCGGGGCTATGGTCTCCTCCGCCGCC
GCTGACGCGTTCGTCAACAACCCGATAGCCAGGAGGATAAGGAGCGCCGC
GGCCCTCGCCGACACGAGAGCGGGGGCGGCGACGGCGGCGACGGCGGGGC
TTCGGCGGAGCGGACTCGCGGACCTGGCCCCGGGGGACACCTTCCGCCTC
TGCAGCGTGGTCGGGGCGGCGCTGCTGATCCCGGCGGCGGCGTACTTCGA
GCGCGACTCCTGGCCGAGGCTCTGGCGAGGGGCGGCCGATGCTGCCGCCG
CTCTAGTAGGGCGGGCGGGCGGCGGCGGCGGCGGCGGCTGCGGCGGTAGT
CCGCCGCCGTTCGAGGAAGCCCTGCGAAGCGGAGTGGAAGCGGCGGCAGC
GGCAGCGGTAGCGGCAGCCGAGGCGGGTGGAGCGGAAGCTGGTGGCAGTG
CGATGGCGGCTGTTGACATAGCGGAAGCGGCGGCGGCGATGGTGGCGAGG
GGAGAATGGGCCGAGGCGTTCCGGCGCGCGCTGCTGTCGGGCGTCTGCTT
CAACCTTTTCTACGACCTAACCTTCAGGTTGCTGGGGCAGCTCCACCCGG
TCACGCACGCGGTGGGCAATACGATCAAGAGGATCGTGGTCATCGGTGCG
GGTGCGTTCGTGTTCGGGGGGGACCTGGGGGGAGCGAGGGGGGCGTTGGG
GAGCGGGCTGGCTGTTCTTGGCGTCCTGGCGTACAGTGTAGCGAAGGCGA
GGTGTCAGCCGACGCAGGACCACGGCGACCGAAGTTCTCGATGACTGGTT
GGCCCTTCTGTCGGCCCTCGTGTCCAACCTGAGCAACGCGTTGAGGAATG
TGCTGATCGTCAAGAACATCGGCCCCGCCGCGGCCCGCCGGCGAGACGCC
GCGACGAAGACCAAGAACAACGAGCGGGCCGGGATGTCACCCCCGCGCGC
CGCGAGCTCCTTCCTGCGGTCGACCGGCGGGGCTATGGTCTCCTCCGCCG
CCGCTGACGCGTTCGTCAACAACCCGATAGCCAGGAGGATAAGGAGCGCC
GCGGCCCTCGCCGACACGAGAGCGGGGGCGGCGACGGCGGCGACGGCGGG
GCTTCGGCGGAGCGGACTCGCGGACCTGGCCCCGGGGGACACCTTCCGCC
TCTGCAGCGTGGTCGGGGCGGCGCTGCTGATCCCGGCGGCGGCGTACTTC
GAGCGCGACTCCTGGCCGAGGCTCTGGCGAGGGGCGGCCGATGCTGCCGC
CGCTCTAGTAGGGCGGGCGGGCGGCGGCGGCGGCGGCGGCTGCGGCGGTA
GTCCGCCGCCGTTCGAGGAAGCCCTGCGAAGCGGAGTGGAAGCGGCGGCA
GCGGCAGCGGTAGCGGCAGCCGAGGCGGGTGGAGCGGAAGCTGGTGGCAG
TGCGATGGCGGCTGTTGACATAGCGGAAGCGGCGGCGGCGATGGTGGCGA
GGGGAGAATGGGCCGAGGCGTTCCGGCGCGCGCTGCTGTCGGGCGTCTGC
TTCAACCTTTTCTACGACCTAACCTTCAGGTTGCTGGGGCAGCTCCACCC
GGTCACGCACGCGGTGGGCAATACGATCAAGAGGATCGTGGTCATCGGTG
CGGGTGCGTTCGTGTTCGGGGGGGACCTGGGGGGAGCGAGGGGGGCGTTG
GGGAGCGGGCTGGCTGTTCTTGGCGTCCTGGCGTACAGTGTAGCGAAGGC
GAGGTGTCAGCCGACGCAGGACCACGGCGACCGAAGTTCTCGATGA
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