mRNA_H-canaliculatus_F_contig1424.3333.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1424.3333.1 vs. uniprot
Match: D7G8K3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K3_ECTSI) HSP 1 Score: 569 bits (1467), Expect = 3.160e-185 Identity = 290/404 (71.78%), Postives = 324/404 (80.20%), Query Frame = 2
Query: 713 GDVSAPD-LPLEERLDRLEVGAELWGATYVPPIAPEAKLRLAKKWTIAADAAATGGGGNGDSPRT--------VPAAGAGAPRILFVLTSFDRGRRLGPQAREVDKLDYLLMIMDEIREACEAGFSPHAHLISAWDPWPEYQLFLDRLFCKRIGGHVPLSLERHPPRIKEVLSIKHRLYMKPRVKEYDLFIQMEDDMILTVNHILQYLEESEKLSFR----KPGSLPKYDFMPGFVRVEPEPGATGVGGEWFEWEIVLSRFRGMYVTGAGTYLGLEKSRVLPYSGNNQGFWMATQEQLKYLQRQCQYLRYTDKSSLPFVEKFSGSLEMFSPVCHNTKASQAERRAIDVFPADSFENFLVHHRTNNKNGKRGESNPAVSVSMMRLWASQVLRDEEMLMEVGDTGR 1885
G+V+A + LPLEERL RLE G ELWGATYVPPIAPE RL KWT A A +G A AP ILFV+TSFDRGRRLG + + VDKL+Y+LMIMDEIR ACEAGFSPH HLISAW+ PE +LF DRL C+RIGG V L+LE HPP IKE LSIKHR+YMKPRV+EYDLF+Q+EDDMILTVNHIL+YLEESEKLS R +P ++P +D+MPGFVRVEPEPGATGVGGEWFEWEI+LSRFRG++V GAGTYLGLEKSRVLP+SGNNQGFWMATQEQLKYL RQCQYLRYT +SS+PFVEKFSGSLEMFSP CH TK VFPA+ FENFLVHHRTNNKNGKRGES PAVSVSM+RLWA+QV+RD+EMLMEVG TGR
Sbjct: 4 GEVAAFEPLPLEERLGRLETGVELWGATYVPPIAPEEMRRLTDKWT--AVGAVSGAXXXXXXXXXXXXXXXXXTAATTVEAPSILFVVTSFDRGRRLGRRGKGVDKLNYVLMIMDEIRGACEAGFSPHVHLISAWEAQPEVELFTDRLLCRRIGGPVTLTLEEHPPSIKEALSIKHRIYMKPRVREYDLFVQLEDDMILTVNHILKYLEESEKLSLRNIGTRPRAMPMHDYMPGFVRVEPEPGATGVGGEWFEWEIILSRFRGVHVVGAGTYLGLEKSRVLPFSGNNQGFWMATQEQLKYLCRQCQYLRYTGQSSVPFVEKFSGSLEMFSPPCHTTK----------VFPAERFENFLVHHRTNNKNGKRGESTPAVSVSMLRLWAAQVVRDDEMLMEVGQTGR 395
BLAST of mRNA_H-canaliculatus_F_contig1424.3333.1 vs. uniprot
Match: A0A6H5JCA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA6_9PHAE) HSP 1 Score: 575 bits (1481), Expect = 6.890e-183 Identity = 358/690 (51.88%), Postives = 416/690 (60.29%), Query Frame = 2
Query: 2 VRVPELSDDVGTRSVHNGAHQRQHQLWLEARAECIRNGGSGSVSVGESRDSGEAAGRAPTRATVPGARGGGAAGEEGTTPGATA------------------------------VRAETTGVVDRNIGNGNERVGXXXXXXXXXXKGGGVRDPPASHG-------------------NSGPTPLLRRGAGAGKDGGLGAPKNPSYEEDGQSSNGGIKRKEGKGAQADEVPLGSREDRPRSLGDAGGSPRGRGGIGSDAERRSMAVVAQEGVGDGCVGFEGGGXXXDGDVSAPD-LPLEERLDRLEVGAELWGATYVPPIAPEAKLRLAKKWT-IAADAAATGGGGNGDSPRTVPAAGAGA-------PRILFVLTSFDRGRRLGPQAREVDKLDYLLMIMDEIREACEAGFSPHAHLISAWDPWPEYQLFLDRLFCKRIGGHVPLSLERHPPRIKEVLSIKHRLYMKPRVKEYDLFIQMEDDMILTVNHILQYLEESEKLSFR----KPGSLPKYDFMPGFVRVEPEPGATGVGGEWFEWEIVLSRFRGMYVTGAGTYLGLEKSRVLPYSGNNQGFWMATQEQLKYLQRQCQYLRYTDKSSLPFVEKFSGSLEMFSPVCHNTKASQAERRAIDVFPADSFENFLVHHRTNNKNGKRGESNPAVSVSMMRLWASQVLRDEEMLMEVGDTGR 1885
V V ELSDD+GTRSVHNG HQR+ QLWLE RA+ IR G +G+ G S+ E +G + GA G E + ATA R + D I G+E GGG DP +SGP L+RG G + E D G+ G+G G E +P G +G GG R++ G GD EGG +V+A + LPLEERL RLE G ELWGATYVPPIAP+ RL +KWT + A + A A A P ILFV+TSFDRGRRLG + + VDKLDY+LMIMDEIR ACEAGFSPH HLISAW+ PE +LF DRL C++IGG V L+LE+HPP IKE LSIKHR+YMKPRV+EYDLF+Q+EDDMILTVNHIL YLEESEKLS R +PG++P +D+MPGF+RVEP+PGATGVGGEWFEWEI+LSRFRG++V GAGTYLGLEKSRVLP SGNNQGFWMATQEQLKYL RQCQYLRY ++SS PFVEKFSGSLEMFSP CH TK VFPA+ FEN LVHHRTNNKNG+RGES PAV VSM+RLWA+QV+RD EMLMEVG TGR
Sbjct: 74 VHVAELSDDIGTRSVHNGVHQRERQLWLETRAKDIREGRTGT---GSSKSVDEESGSNAISDS-------GAQGRESGSSAATARAXXXXXXXXXXXXXXXXXXXXTQMGTAEEARLSASAAAD-GIREGDETA-----------TGGG--DPXXXXXXXXXXXXXXXXXXXXXXXXSSGPNRSLQRGRGG----------DVHRENDVTPGGPGV----GRGG-------GGEEKQPLEGG------KGEGGF------RALGDEPPPGQGD----MEGG------EVAAFEPLPLEERLSRLETGVELWGATYVPPIAPKEMRRLTEKWTAVGAVSGAXXXXXXXXXXXXXXXASTTAAPDQVEMPSILFVVTSFDRGRRLGLRRKGVDKLDYVLMIMDEIRGACEAGFSPHVHLISAWEAQPELELFTDRLLCRKIGGPVTLTLEKHPPSIKETLSIKHRIYMKPRVREYDLFVQLEDDMILTVNHILTYLEESEKLSLRNIGSRPGAMPMHDYMPGFIRVEPKPGATGVGGEWFEWEIILSRFRGVHVVGAGTYLGLEKSRVLPISGNNQGFWMATQEQLKYLCRQCQYLRYAEQSSDPFVEKFSGSLEMFSPPCHTTK----------VFPAERFENLLVHHRTNNKNGQRGESVPAVPVSMLRLWAAQVVRDGEMLMEVGQTGR 686
BLAST of mRNA_H-canaliculatus_F_contig1424.3333.1 vs. uniprot
Match: D7G997_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G997_ECTSI) HSP 1 Score: 353 bits (905), Expect = 2.030e-101 Identity = 195/390 (50.00%), Postives = 249/390 (63.85%), Query Frame = 2
Query: 740 LEERLDRLEVGAELWGATYVPPIAPEAKLRLAKKWTIAADAAATG------GGGNGDSPRTVPAAGAGAPRILFVLTSFDRGRRLGPQAREVDKLDYLLMIMDEIREACEAGFSPHAHLISAWDPWPEYQLFLDRLFCKRIGGHVPLSLERHPPRIKEVLSIKHRLYMKPRVKEYDLFIQMEDDMILTVNHILQYLEESEKLSFRK--PGSLPKYDFMPGFVRVEPEPGATGV------GGEWFEWEIVLSRFRGMYVTGAGTYLGLEKSRVLPYSGNNQGFWMATQEQLKYL--QRQCQYLRYTDKSSLPFVEKFSGSLEMFSPVCHNTKASQAERRAIDVFPADSFENFLVHHRTNNKNGKRGESNPAVSVSMMRLWASQVLRDEEML 1861
+EER+ R+E G LWGAT+VPP+ P +L L KW+ A T GGG+ D G A RILFV+TSFDRGRRLGP ++ DKLD++L++MDEIREACEAGFSP HLI+AW+ DRLFC+R G HVP SLE HP I LSIKHR++MKPR++E+DLFIQ+EDD+I+T+NH+L + EESE L R+ G+ +PGF+RVE G G EW EWE++LSR R + + AG +L L S +P GNNQG WMAT+EQL+ L ++ C YL + + S+ VE SGSL+MF P C K VFPA FE+FLVHHR NNK+G RGES P V +S++R W Q +RDE+ L
Sbjct: 329 VEERVHRMEEGVRLWGATFVPPVEPTRRLELIDKWSGNAGRGRTNTSSSQEGGGDADENTR----GDDAGRILFVMTSFDRGRRLGPSFKK-DKLDFILLMMDEIREACEAGFSPTVHLIAAWELSGVEVFVRDRLFCRRTGAHVPYSLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFIQVEDDVIVTLNHMLLFREESELLDGRRHSDGAPLANTAVPGFIRVEHAAEEEGTIAGPSSGEEWQEWEVMLSRLRPVKLEEAGIFLTLGPSLPVPRGGNNQGMWMATREQLRKLSEKKSCDYLNFDESSTKGHVETHSGSLQMFRPNCGLQK----------VFPASRFESFLVHHRANNKHGVRGESVPGVPISLLRSWVEQFIRDEKFL 703
BLAST of mRNA_H-canaliculatus_F_contig1424.3333.1 vs. uniprot
Match: A0A6H5KYA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA1_9PHAE) HSP 1 Score: 355 bits (910), Expect = 2.230e-101 Identity = 195/386 (50.52%), Postives = 248/386 (64.25%), Query Frame = 2
Query: 734 LPLEERLDRLEVGAELWGATYVPPIAPEAKLRLAKKWTIAADAAATGGGGNGDSPRTVPAAGAGAPRILFVLTSFDRGRRLGPQAR-EVDKLDYLLMIMDEIREACEAGFSPHAHLISAWDPWPEYQLFLDRLFCKRIGGHVPLSLERHPPRIKEVLSIKHRLYMKPRVKEYDLFIQMEDDMILTVNHILQYLEESEKLSFR--KPGSLPKYD-FMPGFVRVEP----EPGATGVGGEWFEWEIVLSRFRGMYVTGAGTYLGLEKSRVLPYSGNNQGFWMATQEQLKYL--QRQCQYLRYTDKSSLPFVEKFSGSLEMFSPVCHNTKASQAERRAIDVFPADSFENFLVHHRTNNKNGKRGESNPAVSVSMMRLWASQVLRDEEML 1861
L ER+ RL+ GAELW TYVPPI P + L KW+ G G+S R IL+V++S+DRG+RLG +VDKLDY+LM+MDE+REACEAGFSPH HLI+AWD L DRLFC+R G VP S E HPP ++ L+IKHR+YMK RV+++D+F+Q+EDDMI+T+NHIL Y EE + L R GS + + F+PGF+RVEP + GEWFEWEIV F + + GAGTY+ L S+VLP +GNNQG WMAT+EQLK + + C YL + + S+ E SGS++MF P C K VFPA FE+F+VHHRTNNKNG+ GES P VS +M+R+WA Q LRDE ML
Sbjct: 406 LAATERVWRLKRGAELWPGTYVPPIEPTRRRELIYKWSYGKGPEEAAGATGGESGR-----------ILYVISSYDRGKRLGLGYNGKVDKLDYILMMMDEMREACEAGFSPHVHLIAAWDTSEVADLIRDRLFCQRTGDLVPYSHEEHPPSVRNNLAIKHRIYMKSRVEDFDVFMQVEDDMIVTLNHILLYREECDNLDIRFGMGGSRGRPNVFVPGFLRVEPGGTKDKEKDKGEGEWFEWEIV---FNPINIYGAGTYMSLTPSKVLPRAGNNQGMWMATREQLKKMAANKACNYLEFDESSTNGIPEMHSGSIQMFLPECGFIK----------VFPATHFEDFMVHHRTNNKNGRAGESIPGVSTAMLRVWAGQFLRDEGML 767
BLAST of mRNA_H-canaliculatus_F_contig1424.3333.1 vs. uniprot
Match: A0A6H5K627_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K627_9PHAE) HSP 1 Score: 298 bits (764), Expect = 2.640e-82 Identity = 185/445 (41.57%), Postives = 247/445 (55.51%), Query Frame = 2
Query: 740 LEERLDRLEVGAELWGATYVPPIAPEAKLRLAKKWTIAA----------------DAAATGGGGNGDSPRTVPAAGAGAPRILFVLTSFDRGRRLGPQAREVDKLDYLLMIMDEIREACEAGFSPHAHLISAWDPWPEYQLFL-DRLFCKRIGGHVPLSLERHPPRIKEVLSIKHRLYMKPRVKEYDLFIQMEDDMILTVNHILQYLEESEKLSFRK--PGSLPKYDFMPGFVRVEPEPGATGV------GGEWFEWEIVLSRFRGMYVTGAGTYLG-------------------------------------------LEKSRV-LPYSGNNQGFWMATQEQLKYLQR--QCQYLRYTDKSSLPFVEKFSGSLEMFSPVCHNTKASQAERRAIDVFPADSFENFLVHHRTNNKNGKRGESNPAVSVSMMRLWASQVLRDEEML 1861
+EER+ R+E G LWG T+VPP+ P +L L KW+ A D ++ GG N + G A RILFV+TSFDRGRRLGP ++ DKLD++L++MDE+REACEAGFSP+ HLI+AW+ E ++F+ DRLFC+R GGHVP SLE HP I LSIKHR++MKPR++E+DLF+Q+EDD+I+T+NH+L + EESE L R+ G+ +PGF+RVE G G G EW EWE++LSR R G +G LE++ + L + G WMAT+EQL+ L C YL + D+SS VE SGSL+MF P C F++FLVHHR NNK+G RGES P V ++++R W Q +RDE+ L
Sbjct: 328 VEERVHRMEEGVRLWGGTFVPPVEPTRRLELIDKWSGHAGRGRSKTSNSQEVSSFDYRSSDGGEN--------SRGDDAGRILFVMTSFDRGRRLGPSFKK-DKLDFILLMMDEMREACEAGFSPNVHLIAAWE-LSEVEVFVRDRLFCRRTGGHVPYSLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFLQVEDDVIVTLNHMLLFREESELLDSRRHSDGATLANTAVPGFIRVEHAAGEEGTVVGPSSGEEWQEWEVMLSRRRSSLGEGIEEGIGSMNATRRMHHRRSLCFFSSTLNELFFLDSLGMNGVFTRLHPVKLEEAGIYLTLGPSLPGMWMATREQLRKLSETMSCDYLNF-DESSKGHVETHSGSLQMFKPNCGR------------------FQSFLVHHRANNKHGVRGESVPGVPITLLRCWVEQFIRDEKFL 743
BLAST of mRNA_H-canaliculatus_F_contig1424.3333.1 vs. uniprot
Match: D8LJ04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ04_ECTSI) HSP 1 Score: 295 bits (754), Expect = 1.080e-81 Identity = 159/319 (49.84%), Postives = 206/319 (64.58%), Query Frame = 2
Query: 746 ERLDRLEVGAELWGATYVPPIAPEAKLRLAKKWTIAADAAATGGGGNGDSPRTVPAAGAGAPRILFVLTSFDRGRRLG-PQAREVDKLDYLLMIMDEIREACEAGFSPHAHLISAWDPWPEYQLFLDRLFCKRIGGHVPLSLERHPPRIKEVLSIKHRLYMKPRVKEYDLFIQMEDDMILTVNHILQYLEESEKLSFR--KPGSLPKYD-FMPGFVRVEP----EPGATGVGGEWFEWEIVLSRFRGMYVTGAGTYLGLEKSRVLPYSGNNQGFWMATQEQLKYL--QRQCQYLRYTDKSSLPFVEKFSGSLEMFSPVC 1672
ER RL+ GAELW TYVPPI P + L KW+ G G+S R IL+V++S+DR +RLG +VDKLDY+LM+MDE++EACE GFSPH HLI+AWD L DRLFC+R G VP S E HPP ++ L+IKHR+YMKPRV+++D+F+Q+EDDMI+T+NHIL Y EE + L R GS + + F+PGF+RVEP + GEWFEWEIVLSR + + GAGTY+ L S+VLP +GNNQG WMAT+EQLK + + C YL + + S+ E SGS++MF P C
Sbjct: 324 ERAWRLKRGAELWRGTYVPPIEPTRRRELVYKWSYGKGPEEAAGATGGESGR-----------ILYVISSYDRRKRLGLGYDGKVDKLDYILMMMDEMKEACEGGFSPHVHLIAAWDTSEVADLIRDRLFCQRTGELVPYSSEEHPPSVRNNLAIKHRIYMKPRVEDFDVFMQVEDDMIVTLNHILLYREECDNLEKRLGMGGSRGRPNVFVPGFLRVEPGGTKDKEKDKWEGEWFEWEIVLSRLNPIKIYGAGTYMSLSPSKVLPRAGNNQGMWMATREQLKKMAANQACNYLEFDESSANGIPEMHSGSIQMFLPEC 631 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1424.3333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1424.3333.1 >prot_H-canaliculatus_F_contig1424.3333.1 ID=prot_H-canaliculatus_F_contig1424.3333.1|Name=mRNA_H-canaliculatus_F_contig1424.3333.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=416bp MAVVAQEGVGDGCVGFEGGGGGGDGDVSAPDLPLEERLDRLEVGAELWGAback to top mRNA from alignment at H-canaliculatus_F_contig1424:13263..25633- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1424.3333.1 ID=mRNA_H-canaliculatus_F_contig1424.3333.1|Name=mRNA_H-canaliculatus_F_contig1424.3333.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=12371bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1424:13263..25633- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1424:13263..25633- >mRNA_H-canaliculatus_F_contig1424.3333.1 ID=mRNA_H-canaliculatus_F_contig1424.3333.1|Name=mRNA_H-canaliculatus_F_contig1424.3333.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2496bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1424:13263..25633- (Hapterophycus canaliculatus Oshoro5f female)back to top |