mRNA_H-canaliculatus_F_contig14230.3330.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14230.3330.1
Unique NamemRNA_H-canaliculatus_F_contig14230.3330.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14230.3330.1 vs. uniprot
Match: A0A6H5KDP6_9PHAE (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDP6_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 1.330e-48
Identity = 125/180 (69.44%), Postives = 136/180 (75.56%), Query Frame = 1 
Query:    1 QVGGNKCSRYSCCEMGYGGSESGGWDPVTGLGTINYQELADYLNVPPIPHGPEPEGG-RDRHHAAYVAWIVVLVFGLLSATLFLVYEHRPKLMLSAATLGRSMRNMXXXXXXXXXXXXXXXXXXXXXRNGGW----------GXGSGVSSGGRPRGALTEMVMGSEIGSVGGDAMYRLLE 507
            QVG NKCSRYSCCE+GYGGSE+GGWDPVTGLGTINYQ L+D+LN+P  P  P+P GG  DRHHAAY+AWIVVLVFGL++ATL LVYEHRPKLMLSAATLGRSMRNM    XXXXXXXXXXXXXXXXX                X        R RGALTEMVMGS+  S+ GDA Y LLE
Sbjct:  807 QVGSNKCSRYSCCELGYGGSETGGWDPVTGLGTINYQALSDFLNIPRSPPRPQPRGGGHDRHHAAYIAWIVVLVFGLIAATLLLVYEHRPKLMLSAATLGRSMRNMGGGVXXXXXXXXXXXXXXXXXXXXXXRSXXXXXXXXXXXXXXXXXXRSRGALTEMVMGSDA-SMAGDASYHLLE 985
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BLAST of mRNA_H-canaliculatus_F_contig14230.3330.1 vs. uniprot
Match: A0A835YUL7_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUL7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.280e-12
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:    4 VGGNKCSRYSCCEMGYGGSESGGWDPVTGLGTINYQELADYLNVPPIPHGPEPEGGRDRHHAAYVAWIVVLVFGLLSATLFLVYEHRPKLMLSAA 288
            VGGN+C+R+SCC MG+  SE G WD VTG GT ++   ADY+ VP       P         ++V  I++LV  L  A +F+VYE RP+L+  AA
Sbjct:  778 VGGNQCTRFSCCTMGFSSSEQG-WDAVTGHGTPSFAAWADYMGVP------NPTNESTYSVRSFVVAIILLVMALTLALVFIVYERRPRLLFGAA 865
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14230.3330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDP6_9PHAE1.330e-4869.44Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A... [more]
A0A835YUL7_9STRA2.280e-1244.21Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14230contigH-canaliculatus_F_contig14230:122..2684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue2.2e-38
Seed eggNOG ortholog2880.D7G3S6
EggNOG free text desc.Pro-kumamolisin, activation domain
EggNOG OGs2C2GH@1,2S2RS@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size1642
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14230.3330.1prot_H-canaliculatus_F_contig14230.3330.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14230 1167..2642 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.335143-UTR-H-canaliculatus_F_contig14230:121..11661622929173.335143-UTR-H-canaliculatus_F_contig14230:121..1166Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14230 122..1166 -
1696845705.9180732-UTR-H-canaliculatus_F_contig14230:121..11661696845705.9180732-UTR-H-canaliculatus_F_contig14230:121..1166Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14230 122..1166 -
1622929173.3876638-UTR-H-canaliculatus_F_contig14230:2642..26841622929173.3876638-UTR-H-canaliculatus_F_contig14230:2642..2684Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14230 2643..2684 -
1696845705.956361-UTR-H-canaliculatus_F_contig14230:2642..26841696845705.956361-UTR-H-canaliculatus_F_contig14230:2642..2684Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14230 2643..2684 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.351871-CDS-H-canaliculatus_F_contig14230:1166..16521622929173.351871-CDS-H-canaliculatus_F_contig14230:1166..1652Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14230 1167..1652 -
1696845705.9329364-CDS-H-canaliculatus_F_contig14230:1166..16521696845705.9329364-CDS-H-canaliculatus_F_contig14230:1166..1652Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14230 1167..1652 -
1622929173.3693416-CDS-H-canaliculatus_F_contig14230:2573..26421622929173.3693416-CDS-H-canaliculatus_F_contig14230:2573..2642Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14230 2574..2642 -
1696845705.9427154-CDS-H-canaliculatus_F_contig14230:2573..26421696845705.9427154-CDS-H-canaliculatus_F_contig14230:2573..2642Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14230 2574..2642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14230.3330.1

>prot_H-canaliculatus_F_contig14230.3330.1 ID=prot_H-canaliculatus_F_contig14230.3330.1|Name=mRNA_H-canaliculatus_F_contig14230.3330.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=185bp
MGYGGSESGGWDPVTGLGTINYQELADYLNVPPIPHGPEPEGGRDRHHAA
YVAWIVVLVFGLLSATLFLVYEHRPKLMLSAATLGRSMRNMSGRGGNGGN
GGGGGDGYEAYERNGGWGGGSGVSSGGRPRGALTEMVMGSEIGSVGGDAM
YRLLEEDDGGDDNEDDRRLEGQREEEDRDARRSV*
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mRNA from alignment at H-canaliculatus_F_contig14230:122..2684-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14230.3330.1 ID=mRNA_H-canaliculatus_F_contig14230.3330.1|Name=mRNA_H-canaliculatus_F_contig14230.3330.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2563bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14230:122..2684- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTCGGAGGCAACAAATGCAGCAGGTACAGCTGCTGCGAGATGGGGTA
CGGCGGCTCGGAGTCCGGGGGCTGGGACCCCGTCACCGGCCTTGGCACCA
TCAACTACCAGGCAAGACATAAAACTCATGAAAATGTTTTCCATGCCTAC
ATCCGCCCGTCAATCCGCGCCGGTGCCGCATGTTTGGTGAAAGCTGGTCT
GGATCGCTTGCGTGGCGAAGCAGGCTGTATAAAGCGCGCATTGCCTTGTT
CATAGCTCTACCGCGGGCGTCGAGCGTCCGACTCGCCGGGTCTACCGAGC
TCACCACCCCGCCTCATCTTCTCCTGCTCAGTCTCCGCGCCCGTTCTCCG
CGCAATTGCTCGTTTGTAAGGAAATCCTTTGTCCCGTGTGCATTGTAGCT
CTCACGTTTTCGCGTATCTGTGGTGCGTTTTAAATGGAATATGCTCTTGC
TGGGTTTCTGCTCGACTCTTGCGTGTTGATGGCGGTGTACTGTACATGAC
GTCCGTCCCCCACGAACAAACCACGCGACCAAGATCGCCCCGGGGCCTGT
TTGTGTGGTCATTGACTGTTCTTAGCTCTGGGGGGTGCGTCGTCGAAAAC
AGTGGCCGATGCACCACAGCTGTGCTGAGCCGCCGCGTGCGTTGTGGGTG
GGCTTGCTGCGTTCGTGAAAGGTGCACACGCGGAAGGGGAAGCCGACGCA
GTCTTGTTCCCCGAAGACCATCGTTCGTTAGATGGACCGCATTGAAAGAC
GGTCCTTGGTTTTGCCTCCACGTCTTTTTCTCACGTGCCGCTGCTGATGC
TGCCGCTCTTTCTGCTGCGGCGCGAACGTGTTTGCTTCCGGGCCTGCGTC
ACGGCCTTCGACAACAATGCAGCAAACCAAATCGCACGATATGTCGAGTA
AACGAAATCCTCCGCTCCTTTGCGCCCTCCCAATTGTACACCATTACGGC
CGCTCGCTCCCTCGATCTAATCCACCCCGCGTGCGTATGCGCGTGCCCCC
CCCCCCCCATCCCGGAACGACACAACGAGTAGGAGCTCGCCGACTACCTG
AACGTCCCGCCGATCCCCCACGGACCGGAGCCTGAAGGGGGGCGCGATCG
GCACCACGCCGCGTACGTCGCCTGGATAGTCGTGCTCGTGTTCGGGCTGC
TGTCCGCGACCCTCTTTTTGGTGTACGAGCACAGGCCCAAGCTCATGCTG
TCCGCAGCCACCCTGGGCCGCAGCATGAGAAACATGAGCGGTAGAGGAGG
CAACGGCGGCAACGGCGGCGGCGGTGGTGATGGGTACGAAGCCTACGAGC
GGAACGGAGGGTGGGGTGGTGGTAGCGGCGTTAGCAGTGGTGGCAGACCG
CGCGGCGCGCTGACCGAGATGGTGATGGGCAGCGAAATCGGGTCGGTCGG
GGGCGACGCCATGTACCGCCTGCTCGAGGAGGACGACGGTGGCGATGATA
ACGAAGACGACCGCAGGCTCGAGGGACAGAGGGAGGAGGAGGATCGGGAT
GCCCGCCGCAGCGTATGATCATTTGTTGTCTGTACCGTTGTTTCGGTCGG
TCCGCTTCTGCCGCAGCTGACCTGGAGGGGGACTCGTCGTGCGCTATCGT
TCCTTCTCCCTTCACTGTTGATAATTGTTTGTATATCTCAGAATAGGCGT
TGTTTGATCGAAGTATACTTGAAGCAGTCTTGCGGTTTCGGTCTGAATGT
GTCGCGCCGCCGTTGTGCCATCGTCGCGTCACGCGCCCCGGGGAGAAACA
TATTTCGGGGGGAGGGGGTGCGCACCGCTTCCAGAAACATTTCGAAACTG
TTTCGGTTGACGAGTTACGCGAGGAGCGATGGTGTGGCAGGAAAAGCCAC
TGCCGACAAGTAGCATCGCGTTTCTAAGAAACATCCCTTCCAGCCCGCTG
CAACGATAGCACGGTCGGCGTGTGGTGTAACCCTCCCTTTTAGATCTCAT
GGGATATGACTTGCGTCCTTGAGCTATCTTGAGGCCCTGTTTGCTAACGT
GCGCAAGCCCGCCCGTTTTTTACTTTCTATGCCTTGGACTTGCTCGTCCA
ATGGGAAAGAGTCGGAATCGTCCAAGGTTTTTCCACGATGCTTGTAGCGC
AAGCATCTGTCTTATCCGACAGGTTCGTTTTCAATAGTGTAATAAAAAAA
TGGAAAATGCGTGGTTGTGGACTGCTGTACGTTGGGTACGGCGAACGAGA
GGACCTTTTCGGCACTTGTCGTCAACACGAGATACCGTCGCCTGCGGGAA
GAGCGGTCGCTCGACGGAAGTCGGAATGAAGACGTATTCGGCTCGGCCAG
GTCACCTTCTGTGCCGACGTTTCTTTTGTTCGTGTGAAGAAAAAGGAAGA
CATGTGGTCTTCCACATTTCGAAGTATTATACTTCCTCCGTATACAGCAG
TAGCGGCCCGATCATAACAAACTGAAATTTCAGCCGAGCCTGGGTTTCTT
ATCGTACTCATATAGGATTTAGTGTGGCACTCGCCACGGAGCCCCTGTTT
ATCGTTAATCTGAGCCTCGCTTTCTCATGATCGAGTTTCTTATCAGCGGG
CCGGCGCTGTATT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14230:122..2684-

>mRNA_H-canaliculatus_F_contig14230.3330.1 ID=mRNA_H-canaliculatus_F_contig14230.3330.1|Name=mRNA_H-canaliculatus_F_contig14230.3330.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1110bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14230:122..2684- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGTACGGCGGCTCGGAGTCCGGGGGCTGGGACCCCGTCACCGGCCT
TGGCACCATCAACTACCAGATGGGGTACGGCGGCTCGGAGTCCGGGGGCT
GGGACCCCGTCACCGGCCTTGGCACCATCAACTACCAGGAGCTCGCCGAC
TACCTGAACGTCCCGCCGATCCCCCACGGACCGGAGCCTGAAGGGGGGCG
CGATCGGCACCACGCCGCGTACGTCGCCTGGATAGTCGTGCTCGTGTTCG
GGCTGCTGTCCGCGACCCTCTTTTTGGTGTACGAGCACAGGCCCAAGCTC
ATGCTGTCCGCAGCCACCCTGGGCCGCAGCATGAGAAACATGAGCGGTAG
AGGAGGCAACGGCGGCAACGGCGGCGGCGGTGGTGATGGGTACGAAGCCT
ACGAGCGGAACGGAGGGTGGGGTGGTGGTAGCGGCGTTAGCAGTGGTGGC
AGACCGCGCGGCGCGCTGACCGAGATGGTGATGGGCAGCGAAATCGGGTC
GGTCGGGGGCGACGCCATGTACCGCCTGCTCGAGGAGGACGACGGTGGCG
ATGATAACGAAGACGACCGCAGGCTCGAGGGACAGAGGGAGGAGGAGGAT
CGGGATGCCCGCCGCAGCGTATGAGAGCTCGCCGACTACCTGAACGTCCC
GCCGATCCCCCACGGACCGGAGCCTGAAGGGGGGCGCGATCGGCACCACG
CCGCGTACGTCGCCTGGATAGTCGTGCTCGTGTTCGGGCTGCTGTCCGCG
ACCCTCTTTTTGGTGTACGAGCACAGGCCCAAGCTCATGCTGTCCGCAGC
CACCCTGGGCCGCAGCATGAGAAACATGAGCGGTAGAGGAGGCAACGGCG
GCAACGGCGGCGGCGGTGGTGATGGGTACGAAGCCTACGAGCGGAACGGA
GGGTGGGGTGGTGGTAGCGGCGTTAGCAGTGGTGGCAGACCGCGCGGCGC
GCTGACCGAGATGGTGATGGGCAGCGAAATCGGGTCGGTCGGGGGCGACG
CCATGTACCGCCTGCTCGAGGAGGACGACGGTGGCGATGATAACGAAGAC
GACCGCAGGCTCGAGGGACAGAGGGAGGAGGAGGATCGGGATGCCCGCCG
CAGCGTATGA
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