mRNA_H-canaliculatus_F_contig1423.3327.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1423.3327.1
Unique NamemRNA_H-canaliculatus_F_contig1423.3327.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1423.3327.1 vs. uniprot
Match: A0A6H5KHS4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS4_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 5.960e-123
Identity = 183/191 (95.81%), Postives = 191/191 (100.00%), Query Frame = 3 
Query:  282 MSSASEDFSSVDLFPGTMTVYGACRPVSSYERLNRIGEGAYGTVYRAVDKQTHSVVALKKVILHNEKQDGFPLTSLREIQLLKRVSHPSCVQLLDVAVGRRREMVFLVFEYCEHDLAGLLDTTKKPFSESDIKCIMLQLLEAIEYLHSRWIIHRDLKMSNLLYNNKGQLKLADFGLARTFGHPVQPMTPKV 854
            MSSA+EDFSSVDLFPGTMTVYGACRPVSSYERLNRIGEGAYGTVYRAVDKQT+S+VALKKVILHNEKQDGFPLTSLREIQLLKR+SHPSCV+LLDVAVGRRREMVFLVFEYCEHDLAGLLD+TKKPFSESDIKCIMLQLL+AIEYLHSRWIIHRDLKMSNLLYNN+GQLKLADFGLARTFGHPVQPMTPKV
Sbjct:    1 MSSAAEDFSSVDLFPGTMTVYGACRPVSSYERLNRIGEGAYGTVYRAVDKQTNSIVALKKVILHNEKQDGFPLTSLREIQLLKRISHPSCVRLLDVAVGRRREMVFLVFEYCEHDLAGLLDSTKKPFSESDIKCIMLQLLDAIEYLHSRWIIHRDLKMSNLLYNNQGQLKLADFGLARTFGHPVQPMTPKV 191
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BLAST of mRNA_H-canaliculatus_F_contig1423.3327.1 vs. uniprot
Match: A0A836CI29_9STRA (Serine/threonine kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI29_9STRA)

HSP 1 Score: 277 bits (708), Expect = 6.390e-86
Identity = 133/195 (68.21%), Postives = 158/195 (81.03%), Query Frame = 3 
Query:  270 GCQAMSSASEDFSSVDLFPGTMTVYGACRPVSSYERLNRIGEGAYGTVYRAVDKQTHSVVALKKVILHNEKQDGFPLTSLREIQLLKRVSHPSCVQLLDVAVGRRREMVFLVFEYCEHDLAGLLDTTKKPFSESDIKCIMLQLLEAIEYLHSRWIIHRDLKMSNLLYNNKGQLKLADFGLARTFGHPVQPMTPKV 854
            G +A    S   S+  LF G   V+G CRPVS+YE+L RIG+GAYGTVY A+DK+T   VALK+VILHNEKQDGFPLTSLRE+ LLKR++H +CV LLDVAVGR R+ VFLVFEYCEHDLA LL+T ++PFS S++K +M QLL A+ YLH  WIIHRDLKMSNLLY N+GQLKLADFGLART+G+P +PMTP V
Sbjct:    9 GNEAADGQSFSASTAALFHGAKGVFGNCRPVSTYEKLGRIGQGAYGTVYEAIDKETKRPVALKRVILHNEKQDGFPLTSLREVALLKRIAHSNCVALLDVAVGRNRDGVFLVFEYCEHDLAHLLETVRRPFSVSEVKTVMQQLLRAVAYLHDNWIIHRDLKMSNLLYTNRGQLKLADFGLARTYGYPPRPMTPTV 203
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BLAST of mRNA_H-canaliculatus_F_contig1423.3327.1 vs. uniprot
Match: A0A7S2C5K6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C5K6_9STRA)

HSP 1 Score: 261 bits (666), Expect = 1.410e-79
Identity = 123/170 (72.35%), Postives = 146/170 (85.88%), Query Frame = 3 
Query:  345 GACRPVSSYERLNRIGEGAYGTVYRAVDKQTHSVVALKKVILHNEKQDGFPLTSLREIQLLKRVSHPSCVQLLDVAVGRRREMVFLVFEYCEHDLAGLLDTTKKPFSESDIKCIMLQLLEAIEYLHSRWIIHRDLKMSNLLYNNKGQLKLADFGLARTFGHPVQPMTPKV 854
            G+CRPVSS+ER NRIGEG YGTVYRAVDK T  VVALKKVILHNEKQ GFP+TSLRE++LLKR++HP+CV L +VAVG+ R+ VFLV EYCEHD+A L+D     FSES++K +M+QLL A+ YLH  WIIHRDLKMSNLLYNN+GQLK+ADFGLAR +G P++PMTPKV
Sbjct:   21 GSCRPVSSFERKNRIGEGTYGTVYRAVDKHTSEVVALKKVILHNEKQVGFPITSLREVRLLKRLNHPNCVLLREVAVGKNRDAVFLVMEYCEHDMASLIDNMCTRFSESEVKGLMVQLLRAVGYLHDNWIIHRDLKMSNLLYNNRGQLKVADFGLARLYGSPLKPMTPKV 190
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BLAST of mRNA_H-canaliculatus_F_contig1423.3327.1 vs. uniprot
Match: A0A7S2R4R4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4R4_9STRA)

HSP 1 Score: 256 bits (653), Expect = 3.750e-77
Identity = 122/170 (71.76%), Postives = 146/170 (85.88%), Query Frame = 3 
Query:  345 GACRPVSSYERLNRIGEGAYGTVYRAVDKQTHSVVALKKVILHNEKQDGFPLTSLREIQLLKRVSHPSCVQLLDVAVGRRREMVFLVFEYCEHDLAGLLDTTKKPFSESDIKCIMLQLLEAIEYLHSRWIIHRDLKMSNLLYNNKGQLKLADFGLARTFGHPVQPMTPKV 854
            G+CR V  +E+ NRIGEG YGTVYRAVDK T   VALKKVILHNE+Q GFP+TS+REI+LLKR+SHP+CV+L DV VG  R+ VFLVFEYCEHD+A L++T  K FSE++IK +M+QLL A+EYLHS+WIIHRDLKMSNLLYN+KGQLKLADFGLAR +G P++ MTPKV
Sbjct:   27 GSCRSVRCFEKKNRIGEGTYGTVYRAVDKATGETVALKKVILHNEQQVGFPITSIREIRLLKRISHPNCVRLEDVVVGTGRDAVFLVFEYCEHDMASLMETMGKRFSEAEIKGLMVQLLRAVEYLHSQWIIHRDLKMSNLLYNSKGQLKLADFGLARLYGSPIRLMTPKV 196
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BLAST of mRNA_H-canaliculatus_F_contig1423.3327.1 vs. uniprot
Match: W7UB09_9STRA (Cyclin-dependent kinase 10 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UB09_9STRA)

HSP 1 Score: 242 bits (617), Expect = 3.980e-72
Identity = 115/177 (64.97%), Postives = 142/177 (80.23%), Query Frame = 3 
Query:  327 GTMTVYGACRPVSSYERLNRIGEGAYGTVYRAVDKQTHSVVALKKVILHNEKQDGFPLTSLREIQLLKRVS-HPSCVQLLDVAVGRRREMVFLVFEYCEHDLAGLLDTTKKPFSESDIKCIMLQLLEAIEYLHSRWIIHRDLKMSNLLYNNKGQLKLADFGLARTFGHPVQPMTPKV 854
            G   +YGACRPV S+++LN+IGEGAYGTVYR +DK    +VALK+VILHNEKQDGFPLTSLREI+ LK +  HP CV+L ++AVGR+R+ VFLVFEYCEHD+A L+D     F+ S++K ++LQLL  + +LH  WIIHRD+KMSNLLY N G+LKLADFGLAR +G P  PMTPKV
Sbjct:   16 GEADLYGACRPVKSFQKLNQIGEGAYGTVYRGIDKANGRMVALKRVILHNEKQDGFPLTSLREIRTLKLIGRHPHCVRLEEIAVGRKRDGVFLVFEYCEHDMAHLIDHMNTRFTSSEVKNLLLQLLRGVAHLHELWIIHRDIKMSNLLYTNAGRLKLADFGLARLYGAPPAPMTPKV 192
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BLAST of mRNA_H-canaliculatus_F_contig1423.3327.1 vs. uniprot
Match: A0A485LJF1_9STRA (Aste57867_21902 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJF1_9STRA)

HSP 1 Score: 229 bits (585), Expect = 9.690e-68
Identity = 114/192 (59.38%), Postives = 146/192 (76.04%), Query Frame = 3 
Query:  282 MSSASEDFSSVDLFPGTMTVYGACRPVSSYERLNRIGEGAYGTVYRAVDKQTHSVVALKKVILHNEKQDGFPLTSLREIQLLKRVSHPSCVQLLDVAVGRRREMVFLVFEYCEHDLAGLLDTTKKPFSESDIKCIMLQLLEAIEYLHSRWIIHRDLKMSNLLYNNKGQLKLADFGLARTFGHPVQP-MTPKV 854
            MSS S   +++ +F      +G CR V  +E+LNRIGEG YGTVYRA DK++  +VALK+VILHNEKQDGFP+T++REI+LLKR+   +CVQL DV VGR+R  VFLVFEYCEHDL+ L+    +PFSES+ K ++++LL A+EYLH   IIHRDLK+SN+LY+  G++KLADFGLAR  G P    MTPKV
Sbjct:    1 MSSKSRTAAAMHVFES----FGTCRDVDEFEKLNRIGEGTYGTVYRARDKKSGEIVALKRVILHNEKQDGFPITAIREIKLLKRLHQENCVQLKDVVVGRKRSGVFLVFEYCEHDLSALMSNIHRPFSESEAKRVLIELLRAVEYLHDMNIIHRDLKLSNILYDGFGRIKLADFGLARETGFPAPSNMTPKV 188
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BLAST of mRNA_H-canaliculatus_F_contig1423.3327.1 vs. uniprot
Match: A0A067CMD0_SAPPC (CMGC/CDK protein kinase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CMD0_SAPPC)

HSP 1 Score: 228 bits (582), Expect = 1.980e-67
Identity = 109/172 (63.37%), Postives = 140/172 (81.40%), Query Frame = 3 
Query:  342 YGACRPVSSYERLNRIGEGAYGTVYRAVDKQTHSVVALKKVILHNEKQDGFPLTSLREIQLLKRVSHPSCVQLLDVAVGRRREMVFLVFEYCEHDLAGLLDTTKKPFSESDIKCIMLQLLEAIEYLHSRWIIHRDLKMSNLLYNNKGQLKLADFGLARTFGHPVQP-MTPKV 854
            +G CR V  +E+LNRIGEG YGTVYRA D+ T  +VALK+VILHNEKQDGFP+T++REI+LLKR+   +CVQL DV VGR+R  VFLVFEYCEHDL+ LL   + PF+ES+ K ++++LL A+EYLHS  IIHRDLK+SN+LY+  G++KLADFGLAR  G+P++  +TPKV
Sbjct:   10 FGTCRDVDEFEKLNRIGEGTYGTVYRARDRATGEIVALKRVILHNEKQDGFPITAIREIKLLKRLRQENCVQLKDVVVGRKRSGVFLVFEYCEHDLSALLTNVRHPFTESEAKRVLIELLRAVEYLHSLNIIHRDLKLSNILYDGFGRVKLADFGLARETGYPMEMNLTPKV 181
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BLAST of mRNA_H-canaliculatus_F_contig1423.3327.1 vs. uniprot
Match: A0A6G0WSG0_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSG0_9STRA)

HSP 1 Score: 228 bits (580), Expect = 3.600e-67
Identity = 108/172 (62.79%), Postives = 139/172 (80.81%), Query Frame = 3 
Query:  342 YGACRPVSSYERLNRIGEGAYGTVYRAVDKQTHSVVALKKVILHNEKQDGFPLTSLREIQLLKRVSHPSCVQLLDVAVGRRREMVFLVFEYCEHDLAGLLDTTKKPFSESDIKCIMLQLLEAIEYLHSRWIIHRDLKMSNLLYNNKGQLKLADFGLARTFGHPVQ-PMTPKV 854
            +G CR V  +E+LNRIGEG YGTVYRA DK++  +VALK+VILHNEKQDGFP+T++REI+LLKR+   +CVQL DV VGR+R  VFLVFEYCEHDL+ L++   +PFS+S+ K ++++LL A+EYLHS  I+HRDLK+SN+LY+  G++KLADFGLAR  G P    MTPKV
Sbjct:   14 FGTCRDVDEFEKLNRIGEGTYGTVYRARDKKSGEIVALKRVILHNEKQDGFPITAIREIKLLKRLQQENCVQLKDVVVGRKRSGVFLVFEYCEHDLSALMNNNHRPFSQSEAKRVLIELLRAVEYLHSMNIVHRDLKLSNILYDGFGRVKLADFGLARETGFPAPFNMTPKV 185
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BLAST of mRNA_H-canaliculatus_F_contig1423.3327.1 vs. uniprot
Match: A0A1V9Z1R6_9STRA (Cyclin-dependent kinase 10-like isoform X1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1R6_9STRA)

HSP 1 Score: 226 bits (577), Expect = 8.940e-67
Identity = 109/172 (63.37%), Postives = 140/172 (81.40%), Query Frame = 3 
Query:  342 YGACRPVSSYERLNRIGEGAYGTVYRAVDKQTHSVVALKKVILHNEKQDGFPLTSLREIQLLKRVSHPSCVQLLDVAVGRRREMVFLVFEYCEHDLAGLLDTTKKPFSESDIKCIMLQLLEAIEYLHSRWIIHRDLKMSNLLYNNKGQLKLADFGLARTFGHPVQ-PMTPKV 854
            +GACR V  +E+LNRIGEG YGTVYRA DK +  +VALK+VILHNEKQDGFP+T++REI+LLKR+   +CVQL DV VGR+R  VFLVFEYCEHDL+ L+   ++PF+ES+ K ++++LL AIEYLH   IIHRDLK+SN+LY+  G++KLADFGLAR  G P++  +TPKV
Sbjct:   11 FGACRDVDEFEKLNRIGEGTYGTVYRARDKVSGEIVALKRVILHNEKQDGFPITAIREIKLLKRLHQENCVQLKDVVVGRKRSGVFLVFEYCEHDLSALMTNVRQPFTESEAKRVLIELLRAIEYLHQLNIIHRDLKLSNILYDGFGRVKLADFGLARETGLPMEMSLTPKV 182
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BLAST of mRNA_H-canaliculatus_F_contig1423.3327.1 vs. uniprot
Match: A0A0G4EY05_VITBC (Protein kinase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EY05_VITBC)

HSP 1 Score: 223 bits (569), Expect = 2.490e-65
Identity = 106/174 (60.92%), Postives = 136/174 (78.16%), Query Frame = 3 
Query:  333 MTVYGACRPVSSYERLNRIGEGAYGTVYRAVDKQTHSVVALKKVILHNEKQDGFPLTSLREIQLLKRVSHPSCVQLLDVAVGRRREMVFLVFEYCEHDLAGLLDTTKKPFSESDIKCIMLQLLEAIEYLHSRWIIHRDLKMSNLLYNNKGQLKLADFGLARTFGHPVQPMTPKV 854
            M+V+G CR V  +E+LNR+GEG YGTVYRA D+++  +VALKKV LH+EK+ GFP T +REI++L+ + HP+ VQL +V VG +   +FLVFEYCEHDLA LLD    PFS ++IKC++LQLL AI++LH  +IIHRD+K+SNLL NNKG LKLADFGLAR FG P +P T  V
Sbjct:    1 MSVFGECRSVDDFEKLNRVGEGTYGTVYRAKDRRSGEIVALKKVRLHSEKE-GFPRTGVREIRILRSLQHPNVVQLREVTVGAQMNSIFLVFEYCEHDLATLLDNMSSPFSHAEIKCLLLQLLRAIQHLHDNFIIHRDVKLSNLLLNNKGTLKLADFGLAREFGSPSEPATQNV 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1423.3327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHS4_9PHAE5.960e-12395.81Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A836CI29_9STRA6.390e-8668.21Serine/threonine kinase n=1 Tax=Tribonema minus Ta... [more]
A0A7S2C5K6_9STRA1.410e-7972.35Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2R4R4_9STRA3.750e-7771.76Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7UB09_9STRA3.980e-7264.97Cyclin-dependent kinase 10 n=1 Tax=Nannochloropsis... [more]
A0A485LJF1_9STRA9.690e-6859.38Aste57867_21902 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CMD0_SAPPC1.980e-6763.37CMGC/CDK protein kinase n=2 Tax=Saprolegnia TaxID=... [more]
A0A6G0WSG0_9STRA3.600e-6762.79Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A1V9Z1R6_9STRA8.940e-6763.37Cyclin-dependent kinase 10-like isoform X1 n=1 Tax... [more]
A0A0G4EY05_VITBC2.490e-6560.92Protein kinase domain-containing protein n=1 Tax=V... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1423contigH-canaliculatus_F_contig1423:6018..10381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.0
Seed ortholog evalue1.8e-58
Seed eggNOG ortholog112098.XP_008604143.1
Preferred nameCDK10
KEGG koko:K02449,ko:K08818
GOsGO:0000226,GO:0000278,GO:0000375,GO:0000377,GO:0000398,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005815,GO:0005819,GO:0005856,GO:0005929,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007089,GO:0007346,GO:0008150,GO:0008152,GO:0008285,GO:0008380,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010562,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010647,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016572,GO:0016592,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019220,GO:0019222,GO:0019538,GO:0022402,GO:0023051,GO:0023056,GO:0030154,GO:0031323,GO:0031325,GO:0031344,GO:0031345,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032502,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033554,GO:0034641,GO:0036064,GO:0036211,GO:0042127,GO:0042325,GO:0042327,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043410,GO:0043412,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0045787,GO:0045931,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051445,GO:0051493,GO:0051716,GO:0051726,GO:0060255,GO:0060491,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072686,GO:0080090,GO:0090068,GO:0090304,GO:0097472,GO:0120025,GO:0120032,GO:0120033,GO:0120035,GO:0120038,GO:0140096,GO:1900087,GO:1901360,GO:1901564,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902017,GO:1902018,GO:1902115,GO:1902116,GO:1902531,GO:1902533,GO:1902806,GO:1902808,GO:1903047,GO:2000045,GO:2000241
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activity
EggNOG OGsKOG0663@1,KOG0663@2759
EC2.7.11.22
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncdk10/11, putative
Ec32 orthologEc-03_002760.1
Exons5
Model size1350
Cds size891
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929172.4541576-UTR-H-canaliculatus_F_contig1423:6017..61951622929172.4541576-UTR-H-canaliculatus_F_contig1423:6017..6195Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1423 6018..6195 -
1696845705.6485167-UTR-H-canaliculatus_F_contig1423:6017..61951696845705.6485167-UTR-H-canaliculatus_F_contig1423:6017..6195Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1423 6018..6195 -
1622929172.78808-UTR-H-canaliculatus_F_contig1423:10100..103811622929172.78808-UTR-H-canaliculatus_F_contig1423:10100..10381Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1423 10101..10381 -
1696845705.7216806-UTR-H-canaliculatus_F_contig1423:10100..103811696845705.7216806-UTR-H-canaliculatus_F_contig1423:10100..10381Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1423 10101..10381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929172.4677665-CDS-H-canaliculatus_F_contig1423:6195..65881622929172.4677665-CDS-H-canaliculatus_F_contig1423:6195..6588Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 6196..6588 -
1696845705.6623657-CDS-H-canaliculatus_F_contig1423:6195..65881696845705.6623657-CDS-H-canaliculatus_F_contig1423:6195..6588Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 6196..6588 -
1622929172.4788382-CDS-H-canaliculatus_F_contig1423:8382..84871622929172.4788382-CDS-H-canaliculatus_F_contig1423:8382..8487Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 8383..8487 -
1696845705.67121-CDS-H-canaliculatus_F_contig1423:8382..84871696845705.67121-CDS-H-canaliculatus_F_contig1423:8382..8487Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 8383..8487 -
1622929172.4896119-CDS-H-canaliculatus_F_contig1423:9073..92861622929172.4896119-CDS-H-canaliculatus_F_contig1423:9073..9286Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 9074..9286 -
1696845705.688944-CDS-H-canaliculatus_F_contig1423:9073..92861696845705.688944-CDS-H-canaliculatus_F_contig1423:9073..9286Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 9074..9286 -
1622929172.503186-CDS-H-canaliculatus_F_contig1423:9543..96451622929172.503186-CDS-H-canaliculatus_F_contig1423:9543..9645Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 9544..9645 -
1696845705.7007556-CDS-H-canaliculatus_F_contig1423:9543..96451696845705.7007556-CDS-H-canaliculatus_F_contig1423:9543..9645Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 9544..9645 -
1622929172.5160043-CDS-H-canaliculatus_F_contig1423:10022..101001622929172.5160043-CDS-H-canaliculatus_F_contig1423:10022..10100Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 10023..10100 -
1696845705.7116106-CDS-H-canaliculatus_F_contig1423:10022..101001696845705.7116106-CDS-H-canaliculatus_F_contig1423:10022..10100Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 10023..10100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1423.3327.1prot_H-canaliculatus_F_contig1423.3327.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1423 6196..10100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1423.3327.1

>prot_H-canaliculatus_F_contig1423.3327.1 ID=prot_H-canaliculatus_F_contig1423.3327.1|Name=mRNA_H-canaliculatus_F_contig1423.3327.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=297bp
MSSASEDFSSVDLFPGTMTVYGACRPVSSYERLNRIGEGAYGTVYRAVDK
QTHSVVALKKVILHNEKQDGFPLTSLREIQLLKRVSHPSCVQLLDVAVGR
RREMVFLVFEYCEHDLAGLLDTTKKPFSESDIKCIMLQLLEAIEYLHSRW
IIHRDLKMSNLLYNNKGQLKLADFGLARTFGHPVQPMTPKVRGGLVQVAW
PDRLDSGSRVNYSARSTSSAAALAALPPLPRRSSRAPSAHDGLIALFSPS
ADEAQEQRHSPTISNRVVLSGFPGRMFVGCGAQPWRSLLVVIVLFV*
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mRNA from alignment at H-canaliculatus_F_contig1423:6018..10381-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1423.3327.1 ID=mRNA_H-canaliculatus_F_contig1423.3327.1|Name=mRNA_H-canaliculatus_F_contig1423.3327.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4364bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1423:6018..10381- (Hapterophycus canaliculatus Oshoro5f female)
GTTCAAGGCAGTGAGCTAACCGCGGCGCTGTACTTGGGCACTTCGGCACT
TGGGCTGAAAGCCCGTGCATCTTGTGTAGGACAAGGGCTGAAGCTCCCTC
ACTTGTTGTTGATAGCCTTGTTCTAGACGCCCACAGCACCGCAGGAATCC
CGATTGGTAAACTCTTCAAGAAGCTACCATACGAAACACCGCGATCAACA
CGGCAGTCACCCAAGCAAGGATATCCGAAGCGAAGTCGTGGAAAGCTAGG
GAGAGTGCTGAAGCTTACAGGTTGCCAAGCCATGTCTTCAGCTTCGGAGG
ACTTCTCCAGCGTAGACTTGTTCCCAGGCACCATGACGGTGTATGGAGCT
TGCAGGCCGGTGAGTTATCAGGGCTTGCTGCGTAATTCGGGCAGGGTGCA
TGCTGCACATATTATTAATAGCAGTGGTATCATATTTACATTCGAGAAGT
CTACATCGCAAACAGCATCAGAGGGCACGTAACTCGATAACTTCTCAAGC
AAGGAGGAACGCAGAGCACTTGAATGCCGATAACATATGGAGAATGCGTC
ACCGCCAGCTTCCATGCAAACACAGAATACATGTCTCTTGTTGGCCAGCA
ACCAACCCTGGGCAATGGAGGAGGGTGGTATCTTACGTCGTCTGCTCGAC
CGTACAGGTATACTTGTAATGAGGTTGCCAACCACCATCTGTCCCGCGCC
TGAAGTGTTCTCCTTTCGATTTCACATGAAAAAAAGGTGAGTTCCTACGA
GCGACTCAACCGAATTGGCGAGGGGGCCTACGGTACCGTCTACCGCGCGG
TGGACAAACAGACCCACAGCGTTGTCGCCCTGAAGAAGGTGCGTACGTGC
GTTTGTGGTGTGTATCCCTAGGGTGTCTTGTCCGTTTACGCGGTTCCATG
TTCGGCGTCAGCGAGTGTCTGGCGGCATCGTTCAGGCGGTTGTCCTTCTA
CCAATCCCCGTAATCCGCCTGACTCTAAGGCAAAGAGCAATCGCGCGGTC
CCCGCCACCGCACGACCAAAGAAATACGACCACCACCAGTTTGTTGGCAA
CAAGCACCCCCGCACGACGTCCCACCCTCCGTGTGGCCCCCCAAGGTCAT
CCTGCACAACGAGAAGCAAGACGGGTTCCCCCTCACATCCCTGCGGGAGA
TCCAGCTCCTCAAAAGGGTCTCCCACCCCAGCTGCGTCCAGCTCTTGGAC
GTCGCGGTGGGGCGGAGGCGGGAGATGGTGTTCCTGGTGTTCGAGTACTG
CGAGCACGACCTGGCCGGCCTATTGGATACCACGAAGAAGCCCTTCTCGG
AGTCTGACGTGAGATACTTGACACTGCGCACGCGAAAGGGAAGAGAAAAA
AACAGTCGTGCAAGACTGTCGCCATCCTGTACTCGTACGGCTCGTGGTTC
TTCCGTGTTCGGTGTAAACGATTTTGTGTGCGAATGTCTTCCGCCCACTG
CTCCCCATACGGCGCCCCGTGTTTCGCCTCGGTTGTGTTCTTCGATGTAC
ATGTATCGTACAGCACGGCGTTCGCATGCCCACAGCGAGAGAGCAAAGCG
TGCAATTCGTGCTAACATTCATGAGTGCAGAGCAGGTTTCAGGAGGGCGT
GGGCGATCTTCCCTTGCCCCGCGGGCGATCTTCCCTTCCCCCGCGGGCGT
TCTGCCTCCCTGTCACCCTTCTCTTGCGTCAATTTCGTCGTCGATGCACG
CCCGCACATGTACACGAGGCTCCTACTCGTGGCCAACCTTGTCGGTTGCA
TCAAAACCGCTTCAGATCGTTGACACCCCCGAGTCAGAGAAGTCGCTTAA
TCGGGCGCACTGCTTCCGCCTCGTCTTTTGTTCTTGGGTCCGTGTTGCTG
CCTCTTTGCGACTTGTCCCTCTCCCTTTCTCCCGCTCGTCGCAGATCAAG
TGCATCATGCTCCAGCTGCTGGAGGCCATCGAGTACCTCCACAGCCGGTG
GATCATACACCGGGACCTCAAGATGTCGAACCTGCTCTACAACAACAAGG
TCGGCGCCGTGGCGTTGCTGCTCTCCAAGTATTACGTACCAAAAGGCGCC
TTATTCTGTCCCGACGATTGCGCACCTCCATGACCGGTGCAAATTTTTCG
GGGCGTCCCGCGTATCTCGCGAGTCATGGTGCTGTTCGACCTGCTCCGAC
AAAAGGCCAGCGCTTGAACCATAAGCGATGGTAGGTGACTTCCAGCTGCG
ATTTGATGTCACCGAGATAGCAGCCAGCGGCGGCAGCGCTGTGCCCGCCC
CTCCGGCTCGAGACGAAGCTTCTCCACCTCGCGTCCAACTTTCGAGGCGG
CGGTGGGGCTTCGAGCTTGTTTTTACGGACAAATCTCACGCCATCGTGCC
TTCGAAAGCGCCGGTCTCATCAGCGTGCGGTGGCGTCCATCCTAGAACGC
TAAACCTACCGGGGAGCGCTTGACTGTCCGCAGTACTCTTGACCGTCCGC
AGTACTTCCGACCGCCCGCGGTACTTTCGACCGCGGCATACCGGCGGTGT
GATGGATCACCTTCTCGGCCTCTGCTGCTCGTGGCTCGGCCTCCAGACCC
GTCCCACTTCGAAGGAGGGCCGCCGTGCGCGGACGGAAGGGATTCCCCGT
TTCAATATCAGGGCCCTTGCCATCCGCGTGCGCTAGTACGCTTGTAGCCT
CATACGAGGCAGGATAGGTCCGCAGGCTGGGATGAAAGCACGATGGACCC
CTAGATGCAGTACATCGTACCGTGGCTTCGCCGCTGTCCACAGCGCGGAG
GACGCGTTAGCGAAGCTTGTCGTTGGGAGGGTCATCGCCGCACCTTCCGA
TAGCACCGGCGCTTTTCAAACAGCTCGGCTCCGCAAGGTTTCGTGGGCGT
CTTTACAAAAATAACGGCGGTGTGCAGGATCGCCGACCTGTTTGGAAGCG
CTCGCTTGACCCCATGGGCATCGCCGAAGCGGAAAGCATGGGTCGGAAGT
TGCCAAGGTCTGGTGTGTCCTGCATGCGCAACTCCTTACGGGAAGGCTTC
ACCTTCCAAAGACCCACGTGCTTCAACTAAGTGCCCATCAGGCGATACGC
CCGTTCGCCGATCAAAGGGATAGCGGCGAGGAGGTGTACGCTGCTGTTGA
GCAGTTGCGAAGCGCACACCTCGCTAATCACGAGCAGTCTGCAACGTGTG
CCGTACGTCTGCCGGCATGATGCATCTCCCGTTGCTGGTCGGAACCCGTG
CCTCTGGCGCATCGACCTTGTCAATGACGTGCTGCAGTCGAGCACTCGAG
TGTCTTACTTCCTGTGTGATGCCCTCTTGTATCCACCCAGGCTTACGCTC
CAGAAGTCGACACGATTTCCTTTTACTCAAGATTGTCGGCTTGATGTCGT
GCGGTTGCCTTGTTTTTCCGAGCTGCTCTCCCAAAACGTAGACTCTCCCC
CTTGATAAGAAGTATTATTTTTTGTATGGTACCAAAATACATCCAAAGGG
GAACCACGACATCAAGGCGATAAAGCGTTGGGTTTTAGAACTCAAGTGAC
GACATGCGGTATTTTTGTCTCGTGGGCTTCAAAAACATCGCCGTTAACGT
TTCGCTGCGGCCCCGAGGTCTGCCGAGTCTACTTCCGTGATCGCATCCCC
TTCCTGCAACACTTACCTCTTGTTACCTCTTGTGAATGGGTTGCACGATC
GCATCATTATCTTTGCGGTGTTTATGCTCCACGCTTCGTTTTCCCTCGCT
TGCTCCAACGCTGTCGCAACCGCAAACGAAGTTTGGGCATAAAAAAAGGT
CGCTTTGCGCGCTGCTCTCCGCTTTCGTTTTGTTTTTTCTCAGGGTCAGT
TGAAGCTGGCCGACTTCGGACTAGCGAGGACTTTCGGGCATCCCGTGCAG
CCGATGACCCCGAAGGTCAGGGGCGGTCTCGTGCAAGTTGCTTGGCCTGA
TCGGCTAGACTCCGGCTCGCGAGTCAACTACTCGGCTCGGTCCACCTCTT
CTGCTGCTGCGTTGGCTGCGCTTCCGCCGCTTCCCCGCAGAAGCTCCCGA
GCACCATCCGCCCACGACGGCTTAATTGCTTTGTTTTCGCCCTCTGCTGA
CGAGGCACAAGAACAGAGGCATTCGCCGACTATCAGCAATCGCGTAGTCT
TGAGCGGCTTCCCGGGGCGAATGTTTGTGGGTTGCGGCGCACAGCCCTGG
CGAAGCCTTCTTGTTGTCATCGTCCTTTTTGTTTGAATCGCTACTCTTGC
ATTTGGCGGCGCGGAAGACAAGAGGCTGTCTCTCCCTCGACGCCTGTTCT
CTTGCTTTCTGTGACCCTCTTTGCCGCCCCGCCTTGGCCGCTTCTTGACC
CGCCCGCTGTCGTGCAAGAAGCCGTTTGATCACCAGAGATGTAGCTAGAG
TTCGTTGTCAGTCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1423:6018..10381-

>mRNA_H-canaliculatus_F_contig1423.3327.1 ID=mRNA_H-canaliculatus_F_contig1423.3327.1|Name=mRNA_H-canaliculatus_F_contig1423.3327.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1782bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1423:6018..10381- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTTCAGCTTCGGAGGACTTCTCCAGCGTAGACTTGTTCCCAGGCAC
CATGACGGTGTATGGAGCTTGCAGGCCGATGTCTTCAGCTTCGGAGGACT
TCTCCAGCGTAGACTTGTTCCCAGGCACCATGACGGTGTATGGAGCTTGC
AGGCCGGTGAGTTCCTACGAGCGACTCAACCGAATTGGCGAGGGGGCCTA
CGGTACCGTCTACCGCGCGGTGGACAAACAGACCCACAGCGTTGTCGCCC
TGAAGAAGGTGAGTTCCTACGAGCGACTCAACCGAATTGGCGAGGGGGCC
TACGGTACCGTCTACCGCGCGGTGGACAAACAGACCCACAGCGTTGTCGC
CCTGAAGAAGGTCATCCTGCACAACGAGAAGCAAGACGGGTTCCCCCTCA
CATCCCTGCGGGAGATCCAGCTCCTCAAAAGGGTCTCCCACCCCAGCTGC
GTCCAGCTCTTGGACGTCGCGGTGGGGCGGAGGCGGGAGATGGTGTTCCT
GGTGTTCGAGTACTGCGAGCACGACCTGGCCGGCCTATTGGATACCACGA
AGAAGCCCTTCTCGGAGTCTGACGTCATCCTGCACAACGAGAAGCAAGAC
GGGTTCCCCCTCACATCCCTGCGGGAGATCCAGCTCCTCAAAAGGGTCTC
CCACCCCAGCTGCGTCCAGCTCTTGGACGTCGCGGTGGGGCGGAGGCGGG
AGATGGTGTTCCTGGTGTTCGAGTACTGCGAGCACGACCTGGCCGGCCTA
TTGGATACCACGAAGAAGCCCTTCTCGGAGTCTGACATCAAGTGCATCAT
GCTCCAGCTGCTGGAGGCCATCGAGTACCTCCACAGCCGGTGGATCATAC
ACCGGGACCTCAAGATGTCGAACCTGCTCTACAACAACAAGATCAAGTGC
ATCATGCTCCAGCTGCTGGAGGCCATCGAGTACCTCCACAGCCGGTGGAT
CATACACCGGGACCTCAAGATGTCGAACCTGCTCTACAACAACAAGGGTC
AGTTGAAGCTGGCCGACTTCGGACTAGCGAGGACTTTCGGGCATCCCGTG
CAGCCGATGACCCCGAAGGTCAGGGGCGGTCTCGTGCAAGTTGCTTGGCC
TGATCGGCTAGACTCCGGCTCGCGAGTCAACTACTCGGCTCGGTCCACCT
CTTCTGCTGCTGCGTTGGCTGCGCTTCCGCCGCTTCCCCGCAGAAGCTCC
CGAGCACCATCCGCCCACGACGGCTTAATTGCTTTGTTTTCGCCCTCTGC
TGACGAGGCACAAGAACAGAGGCATTCGCCGACTATCAGCAATCGCGTAG
TCTTGAGCGGCTTCCCGGGGCGAATGTTTGTGGGTTGCGGCGCACAGCCC
TGGCGAAGCCTTCTTGTTGTCATCGTCCTTTTTGTTTGAGGTCAGTTGAA
GCTGGCCGACTTCGGACTAGCGAGGACTTTCGGGCATCCCGTGCAGCCGA
TGACCCCGAAGGTCAGGGGCGGTCTCGTGCAAGTTGCTTGGCCTGATCGG
CTAGACTCCGGCTCGCGAGTCAACTACTCGGCTCGGTCCACCTCTTCTGC
TGCTGCGTTGGCTGCGCTTCCGCCGCTTCCCCGCAGAAGCTCCCGAGCAC
CATCCGCCCACGACGGCTTAATTGCTTTGTTTTCGCCCTCTGCTGACGAG
GCACAAGAACAGAGGCATTCGCCGACTATCAGCAATCGCGTAGTCTTGAG
CGGCTTCCCGGGGCGAATGTTTGTGGGTTGCGGCGCACAGCCCTGGCGAA
GCCTTCTTGTTGTCATCGTCCTTTTTGTTTGA
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