mRNA_H-canaliculatus_F_contig1423.3326.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1423.3326.1
Unique NamemRNA_H-canaliculatus_F_contig1423.3326.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1423.3326.1 vs. uniprot
Match: A0A6H5KJL9_9PHAE (zinc_ribbon_16 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL9_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.760e-39
Identity = 71/122 (58.20%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:    4 PLPRCFICLQQMGTLNPEVEARRRQFDQLKGRRGDGGXXXXXRAS---GNAXXXXSGRWGGALALLRAEGAPQAALDIWWSWCSLCNHGGHNGHLDDWFAGNDTCGSQGCDCKCASRNPPAM 360
            PLPRCFICLQQ+GTLNPE EARRRQF QLK   G  G     R     G+      G        L  +GAPQAALDIWWSWC++CNHG  NGHL+DWFA +DTCG +GCDCKC S + P +
Sbjct:  352 PLPRCFICLQQIGTLNPETEARRRQFSQLKA--GAAGARTSYRGGIGVGSGGHEAPGXXXXXXXALGQQGAPQAALDIWWSWCNVCNHGXXNGHLEDWFAEHDTCGVRGCDCKCTSHDLPIV 471
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BLAST of mRNA_H-canaliculatus_F_contig1423.3326.1 vs. uniprot
Match: D8LCI6_ECTSI (zinc_ribbon_16 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCI6_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 3.850e-39
Identity = 75/129 (58.14%), Postives = 85/129 (65.89%), Query Frame = 1 
Query:    1 QPLPRCFICLQQMGTLNPEVEARRRQFDQLKG---------RRGDGGXXXXXRASGNAXXXXSGRWGGALALLRAEGAPQAALDIWWSWCSLCNHGGHNGHLDDWFAGNDTCGSQGCDCKCASRNPPAM 360
            +PLPRCFICLQQ+GTLNPE EARRRQF QLKG         R G G       ASG  XXXX      A A L  +GAPQAALDIWWSWC++C      GHL+DWFA +DTCG +GCDCKC S + P +
Sbjct:   19 KPLPRCFICLQQIGTLNPETEARRRQFSQLKGGPASARTNFRGGLGVGSGGYEASGGGXXXXX-XXXAAAAALGQQGAPQAALDIWWSWCNVCXXXXXXGHLEDWFAEHDTCGVRGCDCKCTSHDFPIV 146
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BLAST of mRNA_H-canaliculatus_F_contig1423.3326.1 vs. uniprot
Match: A0A7S0CZV9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CZV9_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 1.270e-13
Identity = 40/119 (33.61%), Postives = 49/119 (41.18%), Query Frame = 1 
Query:    4 PLPRCFICLQQMGTLNPEVEARRRQFDQLKGRRGDGGXXXXXRASGNAXXXXSGRWGGALALLRAEGAPQAALDIWWSWCSLCNHGGHNGHLDDWFAGNDTCGSQGCDCKCASRNPPAM 360
            PLPRC +CL+ M    P   A RR  D       DG      R  G       G           +G        W+ WC  C HGGH GH+ DWFA +  C    CDC+C   + PA+
Sbjct:   20 PLPRCALCLETMDIATPYAIAARRAADVK-----DGKGSAKKRVGGPRKGKTKG----------IDGDSAHPFGEWFVWCQECRHGGHAGHMHDWFANHFVCPVAKCDCRCMQLDEPAL 123
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BLAST of mRNA_H-canaliculatus_F_contig1423.3326.1 vs. uniprot
Match: A0A6L5DAW0_9INSE (zinc_ribbon_16 domain-containing protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5DAW0_9INSE)

HSP 1 Score: 60.5 bits (145), Expect = 2.540e-9
Identity = 37/121 (30.58%), Postives = 45/121 (37.19%), Query Frame = 1 
Query:    1 QPLPRCFICLQQMGTLNPEVEARRRQFDQLKGRRGDGGXXXXXRASGNAXXXXSGRWGGALALLRAEGAPQAALDIWWSWCSLCNHGGHNGHLDDWFAGNDTCGSQGCDCKCASRNPPAML 363
            +PLPRC ICL  MGT +         +    G RG G                              G   A    W++WC  C HGGH GH+  WF  N  C    C C+C S +  A L
Sbjct:   34 KPLPRCAICLINMGTHSG--------YCMSVGSRGMG-----------------------------TGEKLANFTSWFTWCQTCRHGGHVGHMTQWFKENQECPVTACTCRCMSLDAVAAL 117
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BLAST of mRNA_H-canaliculatus_F_contig1423.3326.1 vs. uniprot
Match: A0A0L0FRT7_9EUKA (zinc_ribbon_16 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FRT7_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 2.020e-8
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:  220 LDIWWSWCSLCNHGGHNGHLDDWFAGNDTCGSQGCDCKCASRNPPAM 360
            L +W+SWC  C HGGH GH+ +WF+ +D C    CDC C  ++   M
Sbjct: 1223 LSLWFSWCQNCRHGGHAGHITEWFSAHDECPVSACDCHCMLQDGVTM 1269
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BLAST of mRNA_H-canaliculatus_F_contig1423.3326.1 vs. uniprot
Match: UPI001EEA863B (GATOR complex protein MIOS isoform X1 n=2 Tax=Silurus meridionalis TaxID=175797 RepID=UPI001EEA863B)

HSP 1 Score: 60.8 bits (146), Expect = 2.690e-8
Identity = 40/124 (32.26%), Postives = 54/124 (43.55%), Query Frame = 1 
Query:    1 QPLPRCFICLQQMGTLNPEVEARRRQFDQLKGRRGDGGXXXXXRASGNAXXXXSGRWGGALALLRAEGAPQ---AALDIWWSWCSLCNHGGHNGHLDDWFAGNDTCGSQGCDCKCASRNPPAML 363
            +PLPRC +CL  MGT      +R      +  RRGD       R+S       S R G   +  +A+   +   A  + W++WC  C HGGH GH   WF  +  C    C CKC   +    L
Sbjct:  784 KPLPRCALCLMNMGT---PASSR-----AVSNRRGD-----KTRSSAAPTESLSPRAGAGKSDEKADLPREKKLAQFNNWFTWCHNCRHGGHAGHTLSWFRDHSECPVSACTCKCMQLDTTGNL 894
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BLAST of mRNA_H-canaliculatus_F_contig1423.3326.1 vs. uniprot
Match: A0A1S8VID1_9FUNG (zinc_ribbon_16 domain-containing protein (Fragment) n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VID1_9FUNG)

HSP 1 Score: 60.8 bits (146), Expect = 2.700e-8
Identity = 32/112 (28.57%), Postives = 48/112 (42.86%), Query Frame = 1 
Query:    1 QPLPRCFICLQQMGTLNPEVEARRRQFDQLKGRRGDGGXXXXXRASGNAXXXXSGRWGGALALLRAEGAPQAALDIWWSWCSLCNHGGHNGHLDDWFAGNDTCGSQGCDCKC 336
            +PLPRC IC Q MG     VE                        +G++    +    G  ++  ++      ++ W++WC  C HGGH GH+ DWF G+  C    C C+C
Sbjct:  863 KPLPRCSICCQSMGGT---VE------------------------TGHSKNTVTSEQAGFNSVSNSQEQTATMINSWFTWCQSCKHGGHTGHILDWFKGHTMCPVADCTCQC 947
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BLAST of mRNA_H-canaliculatus_F_contig1423.3326.1 vs. uniprot
Match: A0A6P7FWC1_DIAVI (GATOR complex protein MIOS n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FWC1_DIAVI)

HSP 1 Score: 60.5 bits (145), Expect = 3.640e-8
Identity = 22/57 (38.60%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:  196 AEGAPQAALDIWWSWCSLCNHGGHNGHLDDWFAGNDTCGSQGCDCKCASRNPPAMLS 366
            + GA     ++W++WC  C HGGH GHL +WF  +  C   GC C+C + +  A  S
Sbjct:  787 SSGAKSTPFELWFTWCQTCRHGGHAGHLCEWFDEHQECPVSGCSCRCFAIDAMAAQS 843
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BLAST of mRNA_H-canaliculatus_F_contig1423.3326.1 vs. uniprot
Match: A0A2C9KKF3_BIOGL (zinc_ribbon_16 domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9KKF3_BIOGL)

HSP 1 Score: 59.7 bits (143), Expect = 6.790e-8
Identity = 25/55 (45.45%), Postives = 30/55 (54.55%), Query Frame = 1 
Query:  178 ALALLRAEGAPQAALDIWWSWCSLCNHGGHNGHLDDWFAGNDTCGSQGCDCKCAS 342
            A+ L     A       W+SWC  C HGGH GHL +WF+ +  C   GC CKCAS
Sbjct:  795 AIGLESGSKAKLVPFQEWFSWCMTCRHGGHAGHLREWFSQHGECPVTGCVCKCAS 849
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BLAST of mRNA_H-canaliculatus_F_contig1423.3326.1 vs. uniprot
Match: A0A0B6ZZ52_9EUPU (zinc_ribbon_16 domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZZ52_9EUPU)

HSP 1 Score: 59.3 bits (142), Expect = 9.260e-8
Identity = 22/53 (41.51%), Postives = 29/53 (54.72%), Query Frame = 1 
Query:  199 EGAPQAALDIWWSWCSLCNHGGHNGHLDDWFAGNDTCGSQGCDCKCASRNPPA 357
             GA       W++WC  C HGGH GH+  WF  ++ C   GC CKC S++  A
Sbjct:  800 SGAKLTPFQEWFTWCQTCRHGGHAGHITQWFQEHNECPVTGCTCKCVSQDAVA 852
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1423.3326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJL9_9PHAE1.760e-3958.20zinc_ribbon_16 domain-containing protein n=1 Tax=E... [more]
D8LCI6_ECTSI3.850e-3958.14zinc_ribbon_16 domain-containing protein n=1 Tax=E... [more]
A0A7S0CZV9_9EUKA1.270e-1333.61Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6L5DAW0_9INSE2.540e-930.58zinc_ribbon_16 domain-containing protein n=1 Tax=E... [more]
A0A0L0FRT7_9EUKA2.020e-844.68zinc_ribbon_16 domain-containing protein n=1 Tax=S... [more]
UPI001EEA863B2.690e-832.26GATOR complex protein MIOS isoform X1 n=2 Tax=Silu... [more]
A0A1S8VID1_9FUNG2.700e-828.57zinc_ribbon_16 domain-containing protein (Fragment... [more]
A0A6P7FWC1_DIAVI3.640e-838.60GATOR complex protein MIOS n=1 Tax=Diabrotica virg... [more]
A0A2C9KKF3_BIOGL6.790e-845.45zinc_ribbon_16 domain-containing protein n=1 Tax=B... [more]
A0A0B6ZZ52_9EUPU9.260e-841.51zinc_ribbon_16 domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1423contigH-canaliculatus_F_contig1423:91..724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue6.1e-13
Seed eggNOG ortholog159749.K0STE1
Preferred nameMIOS
KEGG koko:K20407
KEGG Pathwayko04150,map04150
GOsGO:0000003,GO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001674,GO:0001709,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005773,GO:0005774,GO:0005776,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008361,GO:0009267,GO:0009605,GO:0009653,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010506,GO:0010507,GO:0010564,GO:0010646,GO:0010647,GO:0016020,GO:0016043,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019898,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030054,GO:0030154,GO:0030716,GO:0031090,GO:0031312,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031503,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0034198,GO:0034613,GO:0034629,GO:0034641,GO:0035859,GO:0036211,GO:0040020,GO:0042594,GO:0043073,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044754,GO:0045165,GO:0045793,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051445,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0061630,GO:0061659,GO:0061700,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0070727,GO:0071496,GO:0071704,GO:0071840,GO:0090066,GO:0090304,GO:0097042,GO:0098588,GO:0098805,GO:0098852,GO:0140096,GO:1901360,GO:1901564,GO:1902531,GO:1902533,GO:1903432,GO:1904263,GO:1990928,GO:2000241
EggNOG free text desc.Zinc-ribbon like family
EggNOG OGs2XGG2@2836,KOG1008@1,KOG1008@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_002770.1
Exons2
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929172.408241-CDS-H-canaliculatus_F_contig1423:90..3381622929172.408241-CDS-H-canaliculatus_F_contig1423:90..338Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 91..338 +
1696845705.618505-CDS-H-canaliculatus_F_contig1423:90..3381696845705.618505-CDS-H-canaliculatus_F_contig1423:90..338Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 91..338 +
1622929172.4226084-CDS-H-canaliculatus_F_contig1423:603..7241622929172.4226084-CDS-H-canaliculatus_F_contig1423:603..724Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 604..724 +
1696845705.629752-CDS-H-canaliculatus_F_contig1423:603..7241696845705.629752-CDS-H-canaliculatus_F_contig1423:603..724Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1423 604..724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1423.3326.1prot_H-canaliculatus_F_contig1423.3326.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1423 91..724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1423.3326.1

>prot_H-canaliculatus_F_contig1423.3326.1 ID=prot_H-canaliculatus_F_contig1423.3326.1|Name=mRNA_H-canaliculatus_F_contig1423.3326.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=123bp
QPLPRCFICLQQMGTLNPEVEARRRQFDQLKGRRGDGGGGGGGRASGNAG
GTGSGRWGGALALLRAEGAPQAALDIWWSWCSLCNHGGHNGHLDDWFAGN
DTCGSQGCDCKCASRNPPAMLS*
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mRNA from alignment at H-canaliculatus_F_contig1423:91..724+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1423.3326.1 ID=mRNA_H-canaliculatus_F_contig1423.3326.1|Name=mRNA_H-canaliculatus_F_contig1423.3326.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=634bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1423:91..724+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCCCCTCCCGAGGTGCTTCATCTGCCTTCAGCAGATGGGTACCCTCAA
CCCCGAGGTGGAAGCGAGACGTCGACAATTCGATCAGCTCAAGGGCCGGC
GCGGCGATGGCGGCGGAGGCGGTGGCGGGAGGGCCAGCGGCAATGCCGGG
GGCACGGGGAGTGGGCGGTGGGGGGGGGCACTAGCGCTTCTGCGGGCCGA
AGGGGCACCGCAAGCGGCGTTGGATATATGGTGGAGCTGGTGCAGCTTGT
GAGTAGTGGGTGTGACCTGGGTGTGACCTGCCCGTCTTCGTCGGAGTTCG
CGTGCGCTTTTTTGGTGTTGTCGCGCCGCCGCCGCCGCCGCCGCTGCAAG
CCGTAAAGAGTCTGCCCCCTCCCCCTCCCTGCCTTCTACTCGAAACCTGG
CTTGTGCACATGCCACTGCTGCTACTTCAGCCCAAGGACATCACGCTTGT
GCCACCCCGCCCCGCCGAAAGCATCCCAACGCTTACCGAACACTCCTGGG
CACGCCGCTTCAGGTGCAACCACGGTGGACACAACGGCCACCTCGACGAC
TGGTTCGCGGGGAACGACACGTGCGGGTCCCAGGGCTGCGATTGCAAATG
CGCCTCCCGGAACCCTCCCGCCATGTTGTCCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1423:91..724+

>mRNA_H-canaliculatus_F_contig1423.3326.1 ID=mRNA_H-canaliculatus_F_contig1423.3326.1|Name=mRNA_H-canaliculatus_F_contig1423.3326.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=738bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1423:91..724+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCCCCTCCCGAGGTGCTTCATCTGCCTTCAGCAGATGGGTACCCTCAA
CCCCGAGGTGGAAGCGAGACGTCGACAATTCGATCAGCTCAAGGGCCGGC
GCGGCGATGGCGGCGGAGGCGGTGGCGGGAGGGCCAGCGGCAATGCCGGG
GGCACGGGGAGTGGGCGGTGGGGGGGGGCACTAGCGCTTCTGCGGGCCGA
AGGGGCACCGCAAGCGGCGTTGGATATATGGTGGAGCTGGTGCAGCTTCA
GCCCCTCCCGAGGTGCTTCATCTGCCTTCAGCAGATGGGTACCCTCAACC
CCGAGGTGGAAGCGAGACGTCGACAATTCGATCAGCTCAAGGGCCGGCGC
GGCGATGGCGGCGGAGGCGGTGGCGGGAGGGCCAGCGGCAATGCCGGGGG
CACGGGGAGTGGGCGGTGGGGGGGGGCACTAGCGCTTCTGCGGGCCGAAG
GGGCACCGCAAGCGGCGTTGGATATATGGTGGAGCTGGTGCAGCTTGTGC
AACCACGGTGGACACAACGGCCACCTCGACGACTGGTTCGCGGGGAACGA
CACGTGCGGGTCCCAGGGCTGCGATTGCAAATGCGCCTCCCGGAACCCTC
CCGCCATGTTGTCCTAGGTGCAACCACGGTGGACACAACGGCCACCTCGA
CGACTGGTTCGCGGGGAACGACACGTGCGGGTCCCAGGGCTGCGATTGCA
AATGCGCCTCCCGGAACCCTCCCGCCATGTTGTCCTAG
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