mRNA_H-canaliculatus_F_contig14211.3319.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14211.3319.1
Unique NamemRNA_H-canaliculatus_F_contig14211.3319.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14211.3319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14211contigH-canaliculatus_F_contig14211:419..988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size571
Cds size549
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929171.370155-UTR-H-canaliculatus_F_contig14211:418..4391622929171.370155-UTR-H-canaliculatus_F_contig14211:418..439Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14211 419..439 +
1696845705.0347097-UTR-H-canaliculatus_F_contig14211:418..4391696845705.0347097-UTR-H-canaliculatus_F_contig14211:418..439Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14211 419..439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929171.3845649-CDS-H-canaliculatus_F_contig14211:439..9881622929171.3845649-CDS-H-canaliculatus_F_contig14211:439..988Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14211 440..988 +
1696845705.047085-CDS-H-canaliculatus_F_contig14211:439..9881696845705.047085-CDS-H-canaliculatus_F_contig14211:439..988Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14211 440..988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14211.3319.1prot_H-canaliculatus_F_contig14211.3319.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14211 440..988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14211.3319.1

>prot_H-canaliculatus_F_contig14211.3319.1 ID=prot_H-canaliculatus_F_contig14211.3319.1|Name=mRNA_H-canaliculatus_F_contig14211.3319.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=183bp
MMTAALKNAQGTNSVGRSGVQRMMSVVKQTGKHLDSQLEGRMFIGRMDPM
FREHGVEDAIYSNVEVKVGIMKREALIRRFDPKMVDEHQRAYDLLLGSVE
DAEIKYRIQSIGSPSGAWEWIRSHYTLLPGTERMEAEHEWKQLRQKLGEH
PEDCFSRGALIFPRANGRCALRAHHVRSSSPLL
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mRNA from alignment at H-canaliculatus_F_contig14211:419..988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14211.3319.1 ID=mRNA_H-canaliculatus_F_contig14211.3319.1|Name=mRNA_H-canaliculatus_F_contig14211.3319.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14211:419..988+ (Hapterophycus canaliculatus Oshoro5f female)
TCGGACTCGAAGGTAGTCCGTATGATGACTGCCGCACTCAAAAATGCCCA
AGGTACCAATTCCGTAGGCAGGAGTGGAGTACAGAGGATGATGTCTGTGG
TAAAACAAACCGGTAAGCACCTCGACTCTCAGTTGGAGGGTAGAATGTTT
ATCGGGAGGATGGATCCCATGTTTCGGGAGCATGGAGTGGAAGATGCCAT
TTACTCAAACGTGGAGGTGAAGGTTGGAATCATGAAAAGAGAGGCGTTAA
TTAGGCGTTTTGACCCCAAGATGGTAGACGAGCACCAGCGTGCCTACGAT
CTCCTCCTTGGTAGCGTGGAGGATGCTGAAATAAAGTACCGAATACAGTC
GATAGGCAGCCCGAGTGGAGCATGGGAATGGATCCGCAGTCATTACACTC
TCCTCCCTGGTACAGAAAGAATGGAGGCAGAACATGAGTGGAAACAGTTG
CGACAGAAACTGGGCGAGCACCCAGAAGATTGTTTTTCGAGAGGTGCGTT
GATCTTCCCCCGCGCAAACGGCCGATGTGCTCTGCGTGCGCACCATGTGC
GCAGCTCTTCCCCTCTCCTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14211:419..988+

>mRNA_H-canaliculatus_F_contig14211.3319.1 ID=mRNA_H-canaliculatus_F_contig14211.3319.1|Name=mRNA_H-canaliculatus_F_contig14211.3319.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1098bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14211:419..988+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGACTGCCGCACTCAAAAATGCCCAAGGTACCAATTCCGTAGGCAG
GAGTGGAGTACAGAGGATGATGTCTGTGGTAAAACAAACCGGTAAGCACC
TCGACTCTCAGTTGGAGGGTAGAATGTTTATCGGGAGGATGGATCCCATG
TTTCGGGAGCATGGAGTGGAAGATGCCATTTACTCAAACGTGGAGGTGAA
GGTTGGAATCATGAAAAGAGAGGCGTTAATTAGGCGTTTTGACCCCAAGA
TGGTAGACGAGCACCAGCGTGCCTACGATCTCCTCCTTGGTAGCGTGGAG
GATGCTGAAATAAAGTACCGAATACAGTCGATAGGCAGCCCGAGTGGAGC
ATGGGAATGGATCCGCAGTCATTACACTCTCCTCCCTGGTACAGAAAGAA
TGGAGGCAGAACATGAGTGGAAACAGTTGCGACAGAAACTGGGCGAGCAC
CCAGAAGATTGTTTTTCGAGAGGTGCGTTGATCTTCCCCCGCGCAAACGG
CCGATGTGCTCTGCGTGCGCACCATGTGCGCAGCTCTTCCCCTCTCCTTA
TGATGACTGCCGCACTCAAAAATGCCCAAGGTACCAATTCCGTAGGCAGG
AGTGGAGTACAGAGGATGATGTCTGTGGTAAAACAAACCGGTAAGCACCT
CGACTCTCAGTTGGAGGGTAGAATGTTTATCGGGAGGATGGATCCCATGT
TTCGGGAGCATGGAGTGGAAGATGCCATTTACTCAAACGTGGAGGTGAAG
GTTGGAATCATGAAAAGAGAGGCGTTAATTAGGCGTTTTGACCCCAAGAT
GGTAGACGAGCACCAGCGTGCCTACGATCTCCTCCTTGGTAGCGTGGAGG
ATGCTGAAATAAAGTACCGAATACAGTCGATAGGCAGCCCGAGTGGAGCA
TGGGAATGGATCCGCAGTCATTACACTCTCCTCCCTGGTACAGAAAGAAT
GGAGGCAGAACATGAGTGGAAACAGTTGCGACAGAAACTGGGCGAGCACC
CAGAAGATTGTTTTTCGAGAGGTGCGTTGATCTTCCCCCGCGCAAACGGC
CGATGTGCTCTGCGTGCGCACCATGTGCGCAGCTCTTCCCCTCTCCTT
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