mRNA_H-canaliculatus_F_contig14195.3301.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14195.3301.1
Unique NamemRNA_H-canaliculatus_F_contig14195.3301.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14195.3301.1 vs. uniprot
Match: D7FYZ1_ECTSI (TauD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ1_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.300e-23
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    4 LHCLEFDDGVKDGATIFMDAFAAAEHFRDLYPEKFEVLSRVPTTFQKIRDAAPGVEGEDR 183
            LHCLEFD+G K G T F+DAFAAA+HFR+ +PEKFEVLSRVPTTF+KIR AAP V+GE R
Sbjct:  184 LHCLEFDEGGKGGQTSFLDAFAAADHFREKFPEKFEVLSRVPTTFEKIRAAAPRVDGEGR 243
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BLAST of mRNA_H-canaliculatus_F_contig14195.3301.1 vs. uniprot
Match: A0A6H5KBM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM7_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.170e-22
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 FLHCLEFDDGVKDGATIFMDAFAAAEHFRDLYPEKFEVLSRVPTTFQKIRDAAPGVEGEDR 183
            FLHCLEFD+G K G T F+DAFAAA+H R+ +PEKFEVLSRVPTTF+KIR AAP V+GE R
Sbjct:  284 FLHCLEFDEGAKGGQTNFLDAFAAADHLREKFPEKFEVLSRVPTTFEKIRAAAPRVDGEGR 344
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BLAST of mRNA_H-canaliculatus_F_contig14195.3301.1 vs. uniprot
Match: A0A7S3XTX3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTX3_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 8.780e-14
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 FLHCLEFDDGVKDGATIFMDAFAAAEHFRDLYPEKFEVLSRVPTTFQKIR--DAAPGV----EGEDR 183
            +LHCL  D GV  G + F+DAFAAA+H RD  PE FEVL RVP TFQK+R  D  P V    EGE R
Sbjct:   45 YLHCLRNDAGVAGGRSEFLDAFAAAQHLRDSDPEAFEVLCRVPATFQKVRGPDHTPNVARPGEGEGR 111
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BLAST of mRNA_H-canaliculatus_F_contig14195.3301.1 vs. uniprot
Match: A0A7S4D6Q8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6Q8_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 1.390e-13
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 FLHCLEFDDGVKDGATIFMDAFAAAEHFRDLYPEKFEVLSRVPTTFQKIR--DAAPGV----EGEDR 183
            +LHCL  D GV  G + F+DAFAAA+H RD  PE FEVL RVP TFQK+R  D  P V    EGE R
Sbjct:   94 YLHCLRNDAGVAGGRSEFLDAFAAAQHLRDSDPEAFEVLCRVPATFQKVRGPDHTPNVARPGEGEGR 160
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BLAST of mRNA_H-canaliculatus_F_contig14195.3301.1 vs. uniprot
Match: A0A433SQV0_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433SQV0_ELYCH)

HSP 1 Score: 69.3 bits (168), Expect = 2.720e-12
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    4 LHCLEFDDGVKDGATIFMDAFAAAEHFRDLYPEKFEVLSRVPTTFQKI 147
            LHCLEFDD V+ G ++F+DAF  AE FR  YP+ FE+L++VP TFQK+
Sbjct:  281 LHCLEFDDCVEGGDSVFLDAFGIAEKFRVAYPDLFEILTKVPATFQKV 328
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BLAST of mRNA_H-canaliculatus_F_contig14195.3301.1 vs. uniprot
Match: A0A8J1U6R6_OWEFU (Ofus.G091985 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U6R6_OWEFU)

HSP 1 Score: 69.3 bits (168), Expect = 2.740e-12
Identity = 33/49 (67.35%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 FLHCLEFDDGVKDGATIFMDAFAAAEHFRDLYPEKFEVLSRVPTTFQKI 147
            FLHCL  D  VK G +IF+D F  AE  R LYPEKFEVL RVP TFQKI
Sbjct:  301 FLHCLRNDPCVKGGESIFLDIFHIAEEMRQLYPEKFEVLCRVPATFQKI 349
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BLAST of mRNA_H-canaliculatus_F_contig14195.3301.1 vs. uniprot
Match: A0A3M7QZW9_BRAPC (Gamma-butyrobetaine dioxygenase-like isoform X1 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7QZW9_BRAPC)

HSP 1 Score: 65.1 bits (157), Expect = 8.340e-11
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 FLHCLEFDDGVKDGATIFMDAFAAAEHFRDLYPEKFEVLSRVPTTFQKIRD 153
            FLHCL+FD+ V  G T+F+D F  AE FR  +P+ F+VL+R+P +FQK  D
Sbjct:  218 FLHCLKFDESVVGGETLFVDGFQIAEKFRQEHPKLFDVLTRIPASFQKTHD 268
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BLAST of mRNA_H-canaliculatus_F_contig14195.3301.1 vs. uniprot
Match: A0A7M7PNN2_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PNN2_STRPU)

HSP 1 Score: 65.1 bits (157), Expect = 8.500e-11
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 LHCLEFDDGVKDGATIFMDAFAAAEHFRDLYPEKFEVLSRVPTTFQKI 147
            LHCL+FDD V  G +IF+D F  AE FR+ +P  FE L+RVP TFQK 
Sbjct:  287 LHCLQFDDMVLGGESIFLDGFCIAEEFREKFPHHFETLTRVPATFQKF 334
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BLAST of mRNA_H-canaliculatus_F_contig14195.3301.1 vs. uniprot
Match: A0A3M7QXP9_BRAPC (Gamma-butyrobetaine dioxygenase-like isoform X1 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7QXP9_BRAPC)

HSP 1 Score: 62.8 bits (151), Expect = 5.480e-10
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 FLHCLEFDDGVKDGATIFMDAFAAAEHFRDLYPEKFEVLSRVPTTFQKIRD 153
            FLHCL+FD+ V  G T+F+D F  AE FR  +P  F+VL+++P +FQKI +
Sbjct:  218 FLHCLKFDESVVGGETLFVDGFQVAEKFRRDHPRLFDVLTKIPASFQKIHN 268
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BLAST of mRNA_H-canaliculatus_F_contig14195.3301.1 vs. uniprot
Match: UPI001BB1DFF5 (probable gamma-butyrobetaine dioxygenase n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1DFF5)

HSP 1 Score: 62.0 bits (149), Expect = 1.040e-9
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 LHCLEFDDGVKDGATIFMDAFAAAEHFRDLYPEKFEVLSRVPTTFQKI 147
            LHCL+FDD V  G +IF+DAF  AE FR  +P  F+ L+R+P TFQK 
Sbjct:  291 LHCLQFDDVVTGGESIFIDAFHIAEEFRRKFPHHFDSLTRIPATFQKF 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14195.3301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FYZ1_ECTSI1.300e-2375.00TauD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KBM7_9PHAE1.170e-2273.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XTX3_HETAK8.780e-1458.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4D6Q8_HETAK1.390e-1358.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A433SQV0_ELYCH2.720e-1260.42Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A8J1U6R6_OWEFU2.740e-1267.35Ofus.G091985 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A3M7QZW9_BRAPC8.340e-1152.94Gamma-butyrobetaine dioxygenase-like isoform X1 n=... [more]
A0A7M7PNN2_STRPU8.500e-1158.33Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
A0A3M7QXP9_BRAPC5.480e-1050.98Gamma-butyrobetaine dioxygenase-like isoform X1 n=... [more]
UPI001BB1DFF51.040e-956.25probable gamma-butyrobetaine dioxygenase n=1 Tax=L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14195contigH-canaliculatus_F_contig14195:241..1276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2.4e-18
Seed eggNOG ortholog2880.D7FYZ1
KEGG rclassRC00773
KEGG koko:K00474
KEGG ReactionR03451
KEGG Pathwayko00310,map00310
EggNOG free text desc.trimethyllysine dioxygenase activity
EggNOG OGsCOG2175@1,KOG3889@2759
EC1.14.11.8
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929168.296986-CDS-H-canaliculatus_F_contig14195:240..3151622929168.296986-CDS-H-canaliculatus_F_contig14195:240..315Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14195 241..315 -
1696845703.4919214-CDS-H-canaliculatus_F_contig14195:240..3151696845703.4919214-CDS-H-canaliculatus_F_contig14195:240..315Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14195 241..315 -
1622929168.3115878-CDS-H-canaliculatus_F_contig14195:1165..12761622929168.3115878-CDS-H-canaliculatus_F_contig14195:1165..1276Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14195 1166..1276 -
1696845703.5053985-CDS-H-canaliculatus_F_contig14195:1165..12761696845703.5053985-CDS-H-canaliculatus_F_contig14195:1165..1276Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14195 1166..1276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14195.3301.1prot_H-canaliculatus_F_contig14195.3301.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14195 241..1276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14195.3301.1

>prot_H-canaliculatus_F_contig14195.3301.1 ID=prot_H-canaliculatus_F_contig14195.3301.1|Name=mRNA_H-canaliculatus_F_contig14195.3301.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=62bp
FLHCLEFDDGVKDGATIFMDAFAAAEHFRDLYPEKFEVLSRVPTTFQKIR
DAAPGVEGEDR*
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mRNA from alignment at H-canaliculatus_F_contig14195:241..1276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14195.3301.1 ID=mRNA_H-canaliculatus_F_contig14195.3301.1|Name=mRNA_H-canaliculatus_F_contig14195.3301.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1036bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14195:241..1276- (Hapterophycus canaliculatus Oshoro5f female)
TTTCTCCACTGCTTGGAGTTCGACGACGGCGTCAAGGACGGGGCCACGAT
TTTCATGGACGCGTTCGCCGCGGCCGAGCACTTTCGTGACCTCTACCCGG
AAAAGTTCGAGGTCCGTGCCGCTGTAGGAAACACGTGGTTAAATTGGCGA
TCCTCTCGTGGCAAGCCAGAGACTTGCGTTCGAATTGCACGGGTAACGAG
TCGGGATCCTCCGTGTGGCGGTTGTTGGTTGCTTCCTCACGCGCGAGGTT
AGCAGCTCGGCTTTCTTGGATGTTCGGCGAAGGCGCCAAGCTCTCGAACA
TAGCCTGGCCAAGGCGAGGGGTTACTGTCGTCGCGAGAGAGGAATGGCTC
GCCCGGGCTCACAGTTTTTACGTACTAGTCGACTTTCGCCGCCCTTGGCG
GATGGCTGGTCATGCCTTGGAAGCAAGGAGCTTTGGGAGTGCCGCTTGCT
CGCCGTAGGGTTCTGGATCCCTCACCTCCCTGCGTTCGCGTTTTGTTCGA
GCGGCAAAATCCACGCCATGCCTCCGCAGCGCCTTGGCTTTCGAATACTT
ATTTACGTATCCATGCGTCGCGCGTTTCGGCTTTCAGGTTTGCTCGGATC
TTGACCTGCTTGCTTGCCCGCCTGCTTGCCTGCTTGCTTTGTTGTTCGCT
TATCTCCCGTGGAGGTTCTTTCCTGGTATCGCAGGTCATCGTCGATGGCG
TCCCACCGTCTCGTTTTCCTTCTTCCACCGTATCCACCTTTGCCCCGCCA
CAAGTGACACACCTCGGGCGGTGCATCCTTGCTATCTTCCCGTTTCTCCA
TGCCATATAATTTCCCTCTCGCCCCTGCTCGCACATCTTTACTTCATTTC
CTTCTTTGTTTCTCTTCCGCTTGACGGTATCGTTCAAGTCGCGTGCTTGC
GCACCTAAAATATCCACGAGTCGGAAACTCTTCGTCCACCTTCCTCCCCC
CCTCCGAAAAGGTCCTGTCTCGAGTTCCGACCACCTTCCAGAAAATCCGA
GACGCAGCTCCCGGAGTGGAGGGAGAAGACAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14195:241..1276-

>mRNA_H-canaliculatus_F_contig14195.3301.1 ID=mRNA_H-canaliculatus_F_contig14195.3301.1|Name=mRNA_H-canaliculatus_F_contig14195.3301.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14195:241..1276- (Hapterophycus canaliculatus Oshoro5f female)
TTTCTCCACTGCTTGGAGTTCGACGACGGCGTCAAGGACGGGGCCACGAT
TTTCATGGACGCGTTCGCCGCGGCCGAGCACTTTCGTGACCTCTACCCGG
AAAAGTTCGAGTTTCTCCACTGCTTGGAGTTCGACGACGGCGTCAAGGAC
GGGGCCACGATTTTCATGGACGCGTTCGCCGCGGCCGAGCACTTTCGTGA
CCTCTACCCGGAAAAGTTCGAGGTCCTGTCTCGAGTTCCGACCACCTTCC
AGAAAATCCGAGACGCAGCTCCCGGAGTGGAGGGAGAAGACAGGTGAGTC
CTGTCTCGAGTTCCGACCACCTTCCAGAAAATCCGAGACGCAGCTCCCGG
AGTGGAGGGAGAAGACAGGTGA
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