mRNA_H-canaliculatus_F_contig14191.3300.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14191.3300.1
Unique NamemRNA_H-canaliculatus_F_contig14191.3300.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14191.3300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14191contigH-canaliculatus_F_contig14191:1413..2150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size738
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14191.3300.1prot_H-canaliculatus_F_contig14191.3300.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14191 1504..1935 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929168.185841-UTR-H-canaliculatus_F_contig14191:1412..15031622929168.185841-UTR-H-canaliculatus_F_contig14191:1412..1503Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14191 1413..1503 +
1696845703.4213006-UTR-H-canaliculatus_F_contig14191:1412..15031696845703.4213006-UTR-H-canaliculatus_F_contig14191:1412..1503Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14191 1413..1503 +
1622929168.214469-UTR-H-canaliculatus_F_contig14191:1935..21501622929168.214469-UTR-H-canaliculatus_F_contig14191:1935..2150Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14191 1936..2150 +
1696845703.4445186-UTR-H-canaliculatus_F_contig14191:1935..21501696845703.4445186-UTR-H-canaliculatus_F_contig14191:1935..2150Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14191 1936..2150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929168.200416-CDS-H-canaliculatus_F_contig14191:1503..19351622929168.200416-CDS-H-canaliculatus_F_contig14191:1503..1935Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14191 1504..1935 +
1696845703.4304097-CDS-H-canaliculatus_F_contig14191:1503..19351696845703.4304097-CDS-H-canaliculatus_F_contig14191:1503..1935Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14191 1504..1935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14191.3300.1

>prot_H-canaliculatus_F_contig14191.3300.1 ID=prot_H-canaliculatus_F_contig14191.3300.1|Name=mRNA_H-canaliculatus_F_contig14191.3300.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=144bp
MDVYERRNDGEGRARCPVEGTWGVPVVLFGRCGTHTELLSDGRRRYTVRV
QRDTSERHSKHDSVSPLCERSPGGFGSSKYYRGRSLFGSRGKRRKNRARG
GREARSHNQAGETEVSKVTERNKRPNPCCEEGGGAVAVTCCPV*
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mRNA from alignment at H-canaliculatus_F_contig14191:1413..2150+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14191.3300.1 ID=mRNA_H-canaliculatus_F_contig14191.3300.1|Name=mRNA_H-canaliculatus_F_contig14191.3300.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=738bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14191:1413..2150+ (Hapterophycus canaliculatus Oshoro5f female)
AGTGTTCGCCAGACAACACCCGGCGGCAGGATAGAGTCAAGCGTAGAAAC
GGTGGCCGTCGCGATCGTGTTTGTCTAATTCTAATCGGTATATGGATGTC
TACGAGAGAAGAAATGACGGAGAAGGAAGGGCGCGATGTCCTGTAGAAGG
CACCTGGGGTGTTCCGGTTGTGCTTTTTGGAAGGTGTGGCACACACACGG
AGCTGCTGTCGGACGGACGCAGAAGGTACACCGTTCGAGTGCAAAGGGAT
ACGAGTGAGAGACACTCGAAGCACGATTCTGTGAGTCCCTTGTGCGAGCG
TTCGCCCGGAGGTTTTGGGAGTTCCAAGTACTACAGAGGGAGGTCCTTGT
TCGGCTCAAGGGGAAAGAGACGGAAGAACAGAGCGAGGGGAGGCAGAGAA
GCCCGCAGCCACAATCAGGCGGGAGAGACTGAGGTTTCGAAAGTGACTGA
GCGGAACAAACGCCCAAACCCGTGCTGCGAGGAGGGCGGGGGCGCTGTCG
CAGTTACCTGCTGCCCGGTGTAGCGACTGGCCGAAGAGGTTGTCGTCATC
GCACGGGGATGTAGCACAAACAAGAAACAACCAACCATTTGGGGTGGTAT
TTCCGCATGACGGGACTCAAACGATGATCGCAACGAACGCTTGCGATTGT
TCCGACACAACAGCGTCTTCTTCATGGGTTTCATCCCTTTTGCCGCGAGA
GTCTCAACGAAACGCGTGAACTCGAGACGAAGAGCAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14191:1413..2150+

>mRNA_H-canaliculatus_F_contig14191.3300.1 ID=mRNA_H-canaliculatus_F_contig14191.3300.1|Name=mRNA_H-canaliculatus_F_contig14191.3300.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=864bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14191:1413..2150+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGATGTCTACGAGAGAAGAAATGACGGAGAAGGAAGGGCGCGATGTCC
TGTAGAAGGCACCTGGGGTGTTCCGGTTGTGCTTTTTGGAAGGTGTGGCA
CACACACGGAGCTGCTGTCGGACGGACGCAGAAGGTACACCGTTCGAGTG
CAAAGGGATACGAGTGAGAGACACTCGAAGCACGATTCTGTGAGTCCCTT
GTGCGAGCGTTCGCCCGGAGGTTTTGGGAGTTCCAAGTACTACAGAGGGA
GGTCCTTGTTCGGCTCAAGGGGAAAGAGACGGAAGAACAGAGCGAGGGGA
GGCAGAGAAGCCCGCAGCCACAATCAGGCGGGAGAGACTGAGGTTTCGAA
AGTGACTGAGCGGAACAAACGCCCAAACCCGTGCTGCGAGGAGGGCGGGG
GCGCTGTCGCAGTTACCTGCTGCCCGGTGTAGATGGATGTCTACGAGAGA
AGAAATGACGGAGAAGGAAGGGCGCGATGTCCTGTAGAAGGCACCTGGGG
TGTTCCGGTTGTGCTTTTTGGAAGGTGTGGCACACACACGGAGCTGCTGT
CGGACGGACGCAGAAGGTACACCGTTCGAGTGCAAAGGGATACGAGTGAG
AGACACTCGAAGCACGATTCTGTGAGTCCCTTGTGCGAGCGTTCGCCCGG
AGGTTTTGGGAGTTCCAAGTACTACAGAGGGAGGTCCTTGTTCGGCTCAA
GGGGAAAGAGACGGAAGAACAGAGCGAGGGGAGGCAGAGAAGCCCGCAGC
CACAATCAGGCGGGAGAGACTGAGGTTTCGAAAGTGACTGAGCGGAACAA
ACGCCCAAACCCGTGCTGCGAGGAGGGCGGGGGCGCTGTCGCAGTTACCT
GCTGCCCGGTGTAG
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