mRNA_H-canaliculatus_F_contig14177.3291.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14177.3291.1
Unique NamemRNA_H-canaliculatus_F_contig14177.3291.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14177.3291.1 vs. uniprot
Match: D8LGM1_ECTSI (F-box domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM1_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 6.700e-90
Identity = 143/156 (91.67%), Postives = 149/156 (95.51%), Query Frame = 1 
Query:    4 RIIHANWFAVFLPLFLCFLILCLSPCLHWASWGDGGAYLLGMLLGWIPALICLLLVCSRLQGDNVSMNVVMSPLWAVDLVLFLAPVAMAIAVAVRRMRRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGGRETLTAAEVFTPLIVWC 471
            RI HANWFAVF PLF CFLILCLSPCL WASWGDGG YLLGMLLGWIPA++CL+LVCSRLQGDNVSMNV+MSPLWAVDLVL LAPVAMAIAVAVRRM+RGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEG R+TLTAAEVFTPLIVWC
Sbjct:  445 RITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLLGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVAMAIAVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTPLIVWC 600
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BLAST of mRNA_H-canaliculatus_F_contig14177.3291.1 vs. uniprot
Match: A0A6H5L5A3_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A3_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 1.870e-84
Identity = 139/155 (89.68%), Postives = 146/155 (94.19%), Query Frame = 1 
Query:    7 IIHANWFAVFLPLFLCFLILCLSPCLHWASWGDGGAYLLGMLLGWIPALICLLLVCSRLQGDNVSMNVVMSPLWAVDLVLFLAPVAMAIAVAVRRMRRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGGRETLTAAEVFTPLIVWC 471
            I HANWFAVF PLF CFLILCLSPCL WASWGDGG YLLGMLLGWIPA++CL+LVCSRLQGDNVSMNV+MSPLWAVDLVL LAPV MAIAVAVRRM+RGEPVEA LVHTLAASWCLLTPVLAPVVAFEIALAVYVEG R+TL+AAEVFTPLIVWC
Sbjct: 1077 ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLLGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVGMAIAVAVRRMQRGEPVEATLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLSAAEVFTPLIVWC 1231
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14177.3291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGM1_ECTSI6.700e-9091.67F-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L5A3_9PHAE1.870e-8489.68F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14177contigH-canaliculatus_F_contig14177:754..2598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-10_002720.1
Hectar predicted targeting categorysignal peptide
Exons3
Model size477
Cds size477
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14177.3291.1prot_H-canaliculatus_F_contig14177.3291.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14177 754..2598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929167.139121-CDS-H-canaliculatus_F_contig14177:753..9321622929167.139121-CDS-H-canaliculatus_F_contig14177:753..932Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14177 754..932 +
1696845702.9134007-CDS-H-canaliculatus_F_contig14177:753..9321696845702.9134007-CDS-H-canaliculatus_F_contig14177:753..932Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14177 754..932 +
1622929167.154107-CDS-H-canaliculatus_F_contig14177:1337..14821622929167.154107-CDS-H-canaliculatus_F_contig14177:1337..1482Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14177 1338..1482 +
1696845702.925431-CDS-H-canaliculatus_F_contig14177:1337..14821696845702.925431-CDS-H-canaliculatus_F_contig14177:1337..1482Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14177 1338..1482 +
1622929167.1690404-CDS-H-canaliculatus_F_contig14177:2445..25981622929167.1690404-CDS-H-canaliculatus_F_contig14177:2445..2598Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14177 2446..2598 +
1696845702.9337218-CDS-H-canaliculatus_F_contig14177:2445..25981696845702.9337218-CDS-H-canaliculatus_F_contig14177:2445..2598Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14177 2446..2598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14177.3291.1

>prot_H-canaliculatus_F_contig14177.3291.1 ID=prot_H-canaliculatus_F_contig14177.3291.1|Name=mRNA_H-canaliculatus_F_contig14177.3291.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=159bp
LRIIHANWFAVFLPLFLCFLILCLSPCLHWASWGDGGAYLLGMLLGWIPA
LICLLLVCSRLQGDNVSMNVVMSPLWAVDLVLFLAPVAMAIAVAVRRMRR
GEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGGRETLTAAEVF
TPLIVWCW*
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mRNA from alignment at H-canaliculatus_F_contig14177:754..2598+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14177.3291.1 ID=mRNA_H-canaliculatus_F_contig14177.3291.1|Name=mRNA_H-canaliculatus_F_contig14177.3291.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1845bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14177:754..2598+ (Hapterophycus canaliculatus Oshoro5f female)
CTCAGGATCATCCACGCCAATTGGTTCGCGGTTTTTCTCCCGCTGTTTTT
GTGCTTCCTCATCCTGTGCCTGTCTCCCTGCCTGCACTGGGCGTCGTGGG
GGGACGGCGGAGCGTACCTGCTGGGCATGCTGCTCGGTTGGATCCCGGCG
CTCATCTGCTTGCTGCTCGTGTGCTCCAGGTCCGTCCAGCGCGCGCGCGT
GCTTGTGTGTGTGTGTGTCTGCGTCTGTATGGTTCTTGTGCGGCGTGACT
GCACTATCTCGCAGCGGCATGGCGGTCCGGCTGGTGGCTTCCCCTCCCGC
CCCCACACCTTCTAGCGGCGGCGGCGACGAAGCCAAGCAAATTTCGGTTT
TGGTTTTGGGCGATTTCGGGTGTCGCTACCTCCAGGGTCTTCTCGGAGGC
CCCGCCCGCCCGCCTGTGCTGCAAAACGAAAGTAACCAACGCGCTGCCGC
GGCGTAGCCAACCGCGATGTGATGTGTTTTCAAGATGCGACAGGAGAGAA
TAAAGAGTACACGGCTCGGGATGCTTCGTTCTCGGTCATGCGAGGATGAT
ACCTAACACGAAGGCAACACTTGTGCCCCCGCAGGCTTCAGGGCGACAAC
GTGTCGATGAACGTGGTCATGTCCCCGCTCTGGGCCGTGGATCTGGTGCT
CTTCCTCGCCCCTGTTGCCATGGCGATCGCGGTCGCCGTGCGGAGGATGC
GGCGCGGAGAGCCCGTGGAGGCCATGCTGGTGAGGGGTCGGGGGTGGGAG
GGGCGTGGACCGACAGAGCAGCAGTCTTGTTGTCACCCTCAGGTCGGCTT
CACCACCACGGAGTTCTCGATCGAGGTGTCGGAATGCATTTCTGCCGTGG
TTTTCGAGGCGGTCCTGGTGTGGAACGTGCGCTAGCATGCGGACGCCCGT
TATTTCTCTCTCTCACACGCGCGTGTTCGCTGCGGGATATTCCGAGGGCT
GGTTGGATGCTCATGAGGGGTGCACGTTCGTCTGAGGACTGGGGTGAGAT
GTGCCGTGTCGGTGACACCAACGGTCGGAACCTGCGCGACAGCAGCGTGG
GGCATGCGAAGGCCTTGCGACGGCGAGAGGGCCGTGGTGCGCGCCACCCG
CGCAGCAGAGGGGCTGGCAGAGAACGCCACGCCGAGCGTTTGCGCCGTCA
TCGCTCAGTTCTCGAGAGCCTTTTTCGGCGAAGAAGGAGCAGCGTGAGGC
AGCCTCGGCGACAGCAGCAACAGCGACGAAACGTGCCGGACAGTTTGTGG
ATGGACGCAGGCTGCCGTGCCTAAAATCCAGGCTGCCGTGTAACGCACCC
TGGTTCCGTAGGAATGGTTATTCGTGTGACCTTCTTTGTCGCACAGCACG
AACATGGAAAAGGTTTGAGCGACGCTACCGTGGTCGTGCCTCCCCGCGCT
ATCCCACGCGCCTACCTCGCAGCTCCGCCGAGCGGCGAGCGATGCGCTTG
TTGTCCTTCCTTCCCTTCCTTTATTTCCTTTATTTCCTTCCTTTCCTTCC
TTTCCTTCCTTCCTTCCTTCCTTTCCTTCCTTCCTTTCCCTCCTTTCCTT
CCTTTCCTTCCTTCCTTTCCTTCCTTCCTTTCCTTCCTTCCTTTCCTTCC
TTCCTTTCCTTCCTTTCCATCCTTCCGTCCTTCGTTCTTTCTTACCCCCC
CCCCCTTCCTTCCTCGGCACCTTTGGCTCTTCTTCCTCCAAGGTCCACAC
TTTGGCCGCCTCCTGGTGCCTGCTGACGCCGGTGCTAGCGCCCGTGGTGG
CCTTCGAGATCGCGCTCGCGGTGTACGTGGAGGGAGGGCGAGAGACCCTG
ACGGCCGCCGAGGTTTTCACTCCGCTCATCGTCTGGTGCTGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14177:754..2598+

>mRNA_H-canaliculatus_F_contig14177.3291.1 ID=mRNA_H-canaliculatus_F_contig14177.3291.1|Name=mRNA_H-canaliculatus_F_contig14177.3291.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=954bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14177:754..2598+ (Hapterophycus canaliculatus Oshoro5f female)
CTCAGGATCATCCACGCCAATTGGTTCGCGGTTTTTCTCCCGCTGTTTTT
GTGCTTCCTCATCCTGTGCCTGTCTCCCTGCCTGCACTGGGCGTCGTGGG
GGGACGGCGGAGCGTACCTGCTGGGCATGCTGCTCGGTTGGATCCCGGCG
CTCATCTGCTTGCTGCTCGTGTGCTCCAGCTCAGGATCATCCACGCCAAT
TGGTTCGCGGTTTTTCTCCCGCTGTTTTTGTGCTTCCTCATCCTGTGCCT
GTCTCCCTGCCTGCACTGGGCGTCGTGGGGGGACGGCGGAGCGTACCTGC
TGGGCATGCTGCTCGGTTGGATCCCGGCGCTCATCTGCTTGCTGCTCGTG
TGCTCCAGGCTTCAGGGCGACAACGTGTCGATGAACGTGGTCATGTCCCC
GCTCTGGGCCGTGGATCTGGTGCTCTTCCTCGCCCCTGTTGCCATGGCGA
TCGCGGTCGCCGTGCGGAGGATGCGGCGCGGAGAGCCCGTGGAGGCCATG
CTGGCTTCAGGGCGACAACGTGTCGATGAACGTGGTCATGTCCCCGCTCT
GGGCCGTGGATCTGGTGCTCTTCCTCGCCCCTGTTGCCATGGCGATCGCG
GTCGCCGTGCGGAGGATGCGGCGCGGAGAGCCCGTGGAGGCCATGCTGGT
CCACACTTTGGCCGCCTCCTGGTGCCTGCTGACGCCGGTGCTAGCGCCCG
TGGTGGCCTTCGAGATCGCGCTCGCGGTGTACGTGGAGGGAGGGCGAGAG
ACCCTGACGGCCGCCGAGGTTTTCACTCCGCTCATCGTCTGGTGCTGGTG
AGTCCACACTTTGGCCGCCTCCTGGTGCCTGCTGACGCCGGTGCTAGCGC
CCGTGGTGGCCTTCGAGATCGCGCTCGCGGTGTACGTGGAGGGAGGGCGA
GAGACCCTGACGGCCGCCGAGGTTTTCACTCCGCTCATCGTCTGGTGCTG
GTGA
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