mRNA_H-canaliculatus_F_contig14164.3281.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14164.3281.1
Unique NamemRNA_H-canaliculatus_F_contig14164.3281.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14164.3281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14164contigH-canaliculatus_F_contig14164:221..784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size475
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.1186872-CDS-H-canaliculatus_F_contig14164:220..5131622929166.1186872-CDS-H-canaliculatus_F_contig14164:220..513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14164 221..513 +
1696845702.4604313-CDS-H-canaliculatus_F_contig14164:220..5131696845702.4604313-CDS-H-canaliculatus_F_contig14164:220..513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14164 221..513 +
1622929166.1328826-CDS-H-canaliculatus_F_contig14164:604..7821622929166.1328826-CDS-H-canaliculatus_F_contig14164:604..782Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14164 605..782 +
1696845702.4705322-CDS-H-canaliculatus_F_contig14164:604..7821696845702.4705322-CDS-H-canaliculatus_F_contig14164:604..782Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14164 605..782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14164.3281.1prot_H-canaliculatus_F_contig14164.3281.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14164 221..782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14164.3281.1

>prot_H-canaliculatus_F_contig14164.3281.1 ID=prot_H-canaliculatus_F_contig14164.3281.1|Name=mRNA_H-canaliculatus_F_contig14164.3281.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=157bp
ADAGATAASGGDGRPLMRDARAGASQGARGDAAEVARGEASAAEAAGAAE
AAAASAAVAAAGAAAGAAAGAGTPDPSEGMAAKIEEDGEEEQHYTRQRSW
CRPRAAPRCRPRTPLRRWPPPPPPKKATTRTIPMTPKTAPVDRKAGEAAA
VEALLKA
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mRNA from alignment at H-canaliculatus_F_contig14164:221..784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14164.3281.1 ID=mRNA_H-canaliculatus_F_contig14164.3281.1|Name=mRNA_H-canaliculatus_F_contig14164.3281.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=564bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14164:221..784+ (Hapterophycus canaliculatus Oshoro5f female)
GCTGACGCTGGTGCCACGGCCGCTAGCGGCGGCGACGGCCGGCCGTTGAT
GAGGGACGCGCGAGCCGGGGCTTCTCAGGGAGCAAGGGGGGACGCGGCGG
AGGTGGCACGCGGAGAGGCCTCGGCAGCAGAAGCAGCAGGAGCAGCAGAA
GCAGCAGCAGCATCAGCGGCAGTAGCTGCAGCAGGAGCAGCAGCAGGAGC
AGCAGCGGGAGCAGGAACGCCAGACCCAAGCGAAGGCATGGCGGCGAAGA
TCGAGGAGGATGGCGAGGAAGAGCAACACTACACCCGTCAGCGGCGGCAG
CAGCAGCAGCAGGAGCACGGGCGACGGAGGCGCGGCAGGTCTTCCCCCAC
GCCGCTGTCCGGATCCCTGACCCTGGGACCGGAGGTCGTGGTGCCGGCCT
CGCGCGGCCCCTCGCTGTCGACCCAGGACTCCCCTTCGACGGTGGCCTCC
ACCACCTCCTCCGAAGAAGGCGACGACTCGGACGATCCCGATGACTCCGA
AGACGGCGCCGGTGGACAGGAAGGCGGGGGAGGCGGCTGCGGTGGAGGCG
TTACTGAAGGCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14164:221..784+

>mRNA_H-canaliculatus_F_contig14164.3281.1 ID=mRNA_H-canaliculatus_F_contig14164.3281.1|Name=mRNA_H-canaliculatus_F_contig14164.3281.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=942bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14164:221..784+ (Hapterophycus canaliculatus Oshoro5f female)
GCTGACGCTGGTGCCACGGCCGCTAGCGGCGGCGACGGCCGGCCGTTGAT
GAGGGACGCGCGAGCCGGGGCTTCTCAGGGAGCAAGGGGGGACGCGGCGG
AGGTGGCACGCGGAGAGGCCTCGGCAGCAGAAGCAGCAGGAGCAGCAGAA
GCAGCAGCAGCATCAGCGGCAGTAGCTGCAGCAGGAGCAGCAGCAGGAGC
AGCAGCGGGAGCAGGAACGCCAGACCCAAGCGAAGGCATGGCGGCGAAGA
TCGAGGAGGATGGCGAGGAAGAGCAACACTACACCCGTCAGCGGCTGACG
CTGGTGCCACGGCCGCTAGCGGCGGCGACGGCCGGCCGTTGATGAGGGAC
GCGCGAGCCGGGGCTTCTCAGGGAGCAAGGGGGGACGCGGCGGAGGTGGC
ACGCGGAGAGGCCTCGGCAGCAGAAGCAGCAGGAGCAGCAGAAGCAGCAG
CAGCATCAGCGGCAGTAGCTGCAGCAGGAGCAGCAGCAGGAGCAGCAGCG
GGAGCAGGAACGCCAGACCCAAGCGAAGGCATGGCGGCGAAGATCGAGGA
GGATGGCGAGGAAGAGCAACACTACACCCGTCAGCGGTCGTGGTGCCGGC
CTCGCGCGGCCCCTCGCTGTCGACCCAGGACTCCCCTTCGACGGTGGCCT
CCACCACCTCCTCCGAAGAAGGCGACGACTCGGACGATCCCGATGACTCC
GAAGACGGCGCCGGTGGACAGGAAGGCGGGGGAGGCGGCTGCGGTGGAGG
CGTTACTGAAGGCGGTCGTGGTGCCGGCCTCGCGCGGCCCCTCGCTGTCG
ACCCAGGACTCCCCTTCGACGGTGGCCTCCACCACCTCCTCCGAAGAAGG
CGACGACTCGGACGATCCCGATGACTCCGAAGACGGCGCCGGTGGACAGG
AAGGCGGGGGAGGCGGCTGCGGTGGAGGCGTTACTGAAGGCG
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