mRNA_H-canaliculatus_F_contig1416.3278.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1416.3278.1 vs. uniprot
Match: D8LG58_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG58_ECTSI) HSP 1 Score: 576 bits (1484), Expect = 1.340e-186 Identity = 366/683 (53.59%), Postives = 431/683 (63.10%), Query Frame = 2
Query: 161 DMAQEEDVDEDLRTQPLLDSVRSLVNKERQLAGLHLEDKEWEAEQWRTKFLKLQEETGGICSTNDREDVDRAKMFPARSRYPGDLDDDWDDLQAASKKAGDSYLRKLRRKESIELSRRRIGKLDLEGIVTKLRWLRGFTSIDLSDNSIDDTCLQPLKNLMALRQVRRLDLSRNDLGPSAGKALIESLPRCKDLQVLRLQANVVFSRAPDAGARLGSGLRAAIRAGGCRHLWDLSVTLDDFNSTFFQNAPRKTKKKKAGV-PVITGSGRGTSEAVASPALVRQNSADPM-NALTFTRAFHPRASGGGLGALLNGDDGDESAGDGXXXXXXXXXXGASGHKGCITSLGLPYARLHPRTVEELATYAIPSLTHLDLSYCYVGPAGAAALARALAGSESDRGERNGTRGRGSRSLRSLKLPHNAVGDSGARAISKALQGNHCLTFLSLASNGIGSVGGGALAAVVGR-----GGSALDCLDVGDNPLGDVASRLLVAATTAGDGSRSAEGARTGGGGG--GDGRACEWAPVRIHGLDRVAGATVATKAVAEKGVETAAEGSD----VLVAVQEDVSVQSRDA---DGLEQAYQLMLDSRFEPPAEQ-----GSSSGVSETDGESTLDIQWSVATSRADTCEWRVVRKRERRPDFSVKEGVGVDGRLAAGHAKGGSDEPRDGYSLIRL 2146
DMAQE D++E+LRTQPLLDSVRSLVNKERQLAGL LE+KE EAE WR +F +LQ E+GGI D + + S + + D DWD+LQAASKKAGD YL KLRR+ES++LSRR IGK DLEGIV KLRWLRGFTS+DL N+IDD C+QPLK+LMALRQ+ LGPS+G AL+ESL RC+ LQVLRL+AN +F+R P AGARL +GL+AAI+AGGCRHLW LSVTLDDF+ FF NAPRKTK K AG P TG+GR T +A P NAL RAFHPRA GG GALLN D ES + A +G ITSLGLPYARLHPRTVEELA +AI SLTHLDLS+CY+GPAGA ALAR L G + +GT GRGSRSLRSL+LPHNAVGD+GA A+ ++L N C AA VG GGS L LD+GDNPL A+RLLVAA T A T G GG GDG +++ GLDR GA VAT+ A LVA+ +VSVQ DA GL Q YQ++LDSRFE PA++ G + G +TLDI+WS AT D C WRV + R+ +P+ SVKEGVG + +G A E RDGY RL
Sbjct: 29 DMAQE-DLEEELRTQPLLDSVRSLVNKERQLAGLQLEEKEREAELWRDRFRQLQIESGGI----DSAAREAGETIATESWHRDEEDSDWDNLQAASKKAGDRYLGKLRRQESLDLSRRGIGKEDLEGIVVKLRWLRGFTSVDLRGNNIDDACVQPLKSLMALRQLCXXXXXXXQLGPSSGNALLESLSRCRRLQVLRLEANGLFARTPGAGARLAAGLKAAIKAGGCRHLWSLSVTLDDFDGNFFMNAPRKTKAKTAGGGPTATGTGRSTRKAAGPPPXXXXXXXXXXXNALALARAFHPRAPDGGAGALLNEDG--ESEANSRGVRGNTKRGSARVGRGSITSLGLPYARLHPRTVEELAAHAISSLTHLDLSFCYIGPAGAVALARGLDGHDGGSSRGSGTHGRGSRSLRSLQLPHNAVGDTGAHALGQSLSSNRCXXXXXXXXXXXXXXXXXXXAAAVGSRGNDGGGSVLTRLDMGDNPLEGEAARLLVAAAT--------RQAPTDGHGGKDGDGTTRGATTLQVLGLDRALGAAVATREAAXXXXXXXXXXXXXXXXTLVAIGNEVSVQPEDAIGNGGLVQVYQVLLDSRFEMPADEIFTIRGGAKGRG-----ATLDIEWSCATDWLDPCWWRVSQTRKGQPELSVKEGVGTEEGWVSGQANHDGGELRDGYRCQRL 691
BLAST of mRNA_H-canaliculatus_F_contig1416.3278.1 vs. uniprot
Match: A0A6H5K012_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K012_9PHAE) HSP 1 Score: 530 bits (1364), Expect = 1.010e-168 Identity = 363/751 (48.34%), Postives = 426/751 (56.72%), Query Frame = 2
Query: 161 DMAQEEDVDEDLRTQPLLDSVRS--------------------------------------------------------------LVNKERQLAGLHLEDKEWEAEQWRTKFLKLQEETGGICSTNDREDVDRAKMFPARSRYPGDLDDDWD---DLQAASKKAGDSYLRKLRRKESIELSRRRIGKLDLEGIVTKLRWLRGFTSIDLSDNSIDDTCLQPLKNLMALRQVRRLDLSRNDLGPSAGKALIESLPRCKDLQVLRLQANVVFSRAPDAGARLGSGLRAAIRAGGCRHLWDLSVTLDDFNSTFFQNAPRKTKKKKAGV-PVITGSGRGTSEAVASP-ALVRQNSADPMNALTFTRAFHPRASGGGLGALLNGDDGDESAGDGXXXXXXXXXXGASGHKGCITSLGLPYARLHPRTVEELATYAIPSLTHLDLSYCYVGPAGAAALARALAGSESDRGERNGTRGRGSRSLRSLKLPHNAVGDSGARAISKALQGNHCLTFLSLASNGIGSVGGGALAAVVGR-----GGSALDCLDVGDNPLGDVASRLLVAATTAGDGSRSAEGARTGGGGG--GDGRACEWAPVRIHGLDRVAGATVATKAVAEKGVETAAEG----SDVLVAVQEDVSVQSRDA---DGLEQA--------YQLMLDSRFEPPAEQGSSSGVSETDGESTLDIQWSVATSRADTCEWRVVRKRERRPDFSVKEGVGVDGRLAAGHAKGGSDEPRDGYSLIRL 2146
DMAQE D+DE+LRTQPLLDSVRS LVNKERQLAGL LE+KE EAE WR +F +LQ S + + D+WD +LQAASKKAGD YL KLRR++S++LSRR IGK DLEGIV KLRWLRGFTS+DL DNSIDDTC+QPLK+LMALRQ+ LDL N LGPS+G AL+ESL RC+ LQVLRL+AN +F+R P AGARL +GLRAAI+AGGCR LW LSVTLDDF+ FF NAPRKTK + AG P TG+GR +A P A NAL RAFHPRA GG GA LNGD ES + A +G ITSLGLPYARLHP+TVEELA +A+ SLT LDLS+CY+GPAGA LARAL G + +GTRG+GSRSLRSLKLPHNAVGD+GA A+ ++L N C AA VG GGS L LD+GDNPL A+RLLVAA T A T G GG GDG +++ GLDR G VAT+ + LV + +VSVQ DA DGL Q YQ++LDSRFE PA++ + +TL+IQWS AT D C WRV + RE RP+FSVKEGVG + +G A E RDGY RL
Sbjct: 29 DMAQE-DLDEELRTQPLLDSVRSNDIASSSFLQRDQNPKLKRGANGTTSSTTTDDHLVGRSVFCTIVYACADNSSIRLPLLFLEGLVNKERQLAGLQLEEKEREAELWRDRFRQLQ-----------------------ASPFFVHVWDEWDVQDNLQAASKKAGDPYLGKLRRQDSLDLSRRGIGKEDLEGIVVKLRWLRGFTSVDLRDNSIDDTCVQPLKSLMALRQLCSLDLRGNQLGPSSGNALLESLSRCRRLQVLRLEANGLFARTPGAGARLAAGLRAAIKAGGCRRLWSLSVTLDDFDGKFFMNAPRKTKAETAGGGPKATGTGRSLRKAAGPPPAXXXXXXXXXXNALALARAFHPRAPDGGAGAFLNGDG--ESEANSRGVRGNTRRGSARVGRGSITSLGLPYARLHPKTVEELAAHAVSSLTSLDLSFCYIGPAGAVTLARALDGDDGSSRRGSGTRGQGSRSLRSLKLPHNAVGDTGAHALGRSLSNNRCXXXXXXXXXXXXXXXXXXXAAAVGSRGNDGGGSVLTRLDMGDNPLEGEAARLLVAAATCD--------APTKGHGGTDGDGTTRGTTTLQVLGLDRALGTAVATREAXXXXXXXXXXXXXXTTTTLVTIGNEVSVQPEDAIGNDGLVQVGTRVNTMVYQVLLDSRFETPADEIFTIRGGARGRGATLEIQWSFATDWLDPCWWRVSQTREGRPEFSVKEGVGSEEGWVSGQANNDGAEMRDGYRCQRL 745
BLAST of mRNA_H-canaliculatus_F_contig1416.3278.1 vs. uniprot
Match: A0A7S2WJM3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJM3_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 5.780e-16 Identity = 112/389 (28.79%), Postives = 167/389 (42.93%), Query Frame = 2
Query: 464 SYLRKLRRKESIELSRRRIGKLDLEGIVTKLRWLRGFTSIDLSDNSIDDTCLQPLKNLMALRQVRRLDLSRNDLGPSAGKALIESLPRCKDLQVLRLQANVVFSRAPDAGARLGSGLRAAIRAGGCRHLWDLSVTLDDFNSTFFQNAPRKTKKKKAGVPVITGSGRGTSEAVASPALVRQNSADPMNALTFTRAFHPRASGGGLGALLNGDDGDESAGDGXXXXXXXXXXGASGHKGCITSLGLPYARLHPRTVEELATYAIP----SLTHLDLSYCYVGPAGAAALARALAGSESDRGERNGTRGRGSRSLRSLKLPHNAVGDSGARAISKAL--QGNHCLTFLSLASNGIGSVGGGALAAVVGRGGSALDCLDVGDNPLGDVASRLL 1612
+ L+ L+ E ++LS + DLE + +L L + L+ + D + L+ L+ ++ +DLS N+LG A++ +LPR + L L+ N + P G RLG+ L A R +L L VTLDD+NS G + A + ++ P+NA+ F R RA L +++LGL ARL T+++L++ SLT+LDLS+ ++G AGA ALA AL R G L L+LPHN +G G AI +AL N LT L++ +N I G AL +V + L L++GDN LG AS L
Sbjct: 129 AILKILKGLEHLDLSDEPLKAKDLEAAIKRLPRLHRSPRLSLARAGLTDDLARTLQKLLEYSFIK-VDLSSNNLGAIGLAAVLTALPRRASVTELNLEDNQPLASTPLVGERLGNFLMDAYRY--APNLCSLRVTLDDYNSP------------------------GAAAAAKAKGGAKRRGKSPLNAVQFVRMLR-RAD------TLT-----------------------------LSNLGLVGARLSLETIKQLSSLLGERPGQSLTNLDLSFAFIGFAGATALASAL--------RRPGC------PLAGLQLPHNGLGSGGTEAICEALLKSRNETLTTLNVRANQITDSGAEALRRLV-LASTTLTFLELGDNDLGSRASAQL 439 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1416.3278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1416.3278.1 >prot_H-canaliculatus_F_contig1416.3278.1 ID=prot_H-canaliculatus_F_contig1416.3278.1|Name=mRNA_H-canaliculatus_F_contig1416.3278.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=871bp MAQEEDVDEDLRTQPLLDSVRSLVNKERQLAGLHLEDKEWEAEQWRTKFLback to top mRNA from alignment at H-canaliculatus_F_contig1416:12896..19347+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1416.3278.1 ID=mRNA_H-canaliculatus_F_contig1416.3278.1|Name=mRNA_H-canaliculatus_F_contig1416.3278.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6452bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1416:12896..19347+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1416:12896..19347+ >mRNA_H-canaliculatus_F_contig1416.3278.1 ID=mRNA_H-canaliculatus_F_contig1416.3278.1|Name=mRNA_H-canaliculatus_F_contig1416.3278.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=5226bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1416:12896..19347+ (Hapterophycus canaliculatus Oshoro5f female)back to top |