mRNA_H-canaliculatus_F_contig14150.3272.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14150.3272.1
Unique NamemRNA_H-canaliculatus_F_contig14150.3272.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14150.3272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14150contigH-canaliculatus_F_contig14150:2077..2498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size424
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929164.9748445-UTR-H-canaliculatus_F_contig14150:2076..21921622929164.9748445-UTR-H-canaliculatus_F_contig14150:2076..2192Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14150 2077..2192 +
1696845702.005812-UTR-H-canaliculatus_F_contig14150:2076..21921696845702.005812-UTR-H-canaliculatus_F_contig14150:2076..2192Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14150 2077..2192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929164.9918854-CDS-H-canaliculatus_F_contig14150:2192..24981622929164.9918854-CDS-H-canaliculatus_F_contig14150:2192..2498Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14150 2193..2498 +
1696845702.0148523-CDS-H-canaliculatus_F_contig14150:2192..24981696845702.0148523-CDS-H-canaliculatus_F_contig14150:2192..2498Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14150 2193..2498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14150.3272.1prot_H-canaliculatus_F_contig14150.3272.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14150 2193..2498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14150.3272.1

>prot_H-canaliculatus_F_contig14150.3272.1 ID=prot_H-canaliculatus_F_contig14150.3272.1|Name=mRNA_H-canaliculatus_F_contig14150.3272.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=102bp
MAHADSFSRAPRFEKRPSFPGLVAEKGFCLNASTVDGNRNSSPHSPLKIY
DKGSPRRTSRIRTPFFVFKIRPAKAKISYITGPRKNRTSLHWSFAAKKTP
PR
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mRNA from alignment at H-canaliculatus_F_contig14150:2077..2498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14150.3272.1 ID=mRNA_H-canaliculatus_F_contig14150.3272.1|Name=mRNA_H-canaliculatus_F_contig14150.3272.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=422bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14150:2077..2498+ (Hapterophycus canaliculatus Oshoro5f female)
GTCGAGCGTCGTTCCCTCGCCGGTAACACAAGCCTCTCGAAAAAGGTCGA
ACAAGCGAATGTGGGCATGTCCCCCCCGCCCTCCGTGGCTCTCGTGGAAA
CCCCGCGAGATCGTGGATGGCGCACGCGGACTCCTTCTCCCGCGCCCCGA
GGTTCGAGAAACGGCCTTCGTTCCCTGGACTTGTTGCAGAGAAAGGGTTC
TGCTTGAACGCTTCAACGGTGGATGGGAACCGAAACTCTTCTCCGCATTC
TCCGCTCAAGATCTACGACAAAGGGTCCCCGCGAAGAACCTCAAGGATCC
GAACCCCCTTCTTCGTATTTAAGATCCGTCCAGCAAAAGCAAAGATTTCG
TACATCACCGGACCGCGAAAAAACCGTACCTCTCTACACTGGAGCTTCGC
TGCTAAGAAAACTCCTCCGCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14150:2077..2498+

>mRNA_H-canaliculatus_F_contig14150.3272.1 ID=mRNA_H-canaliculatus_F_contig14150.3272.1|Name=mRNA_H-canaliculatus_F_contig14150.3272.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14150:2077..2498+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGCACGCGGACTCCTTCTCCCGCGCCCCGAGGTTCGAGAAACGGCC
TTCGTTCCCTGGACTTGTTGCAGAGAAAGGGTTCTGCTTGAACGCTTCAA
CGGTGGATGGGAACCGAAACTCTTCTCCGCATTCTCCGCTCAAGATCTAC
GACAAAGGGTCCCCGCGAAGAACCTCAAGGATCCGAACCCCCTTCTTCGT
ATTTAAGATCCGTCCAGCAAAAGCAAAGATTTCGTACATCACCGGACCGC
GAAAAAACCGTACCTCTCTACACTGGAGCTTCGCTGCTAAGAAAACTCCT
CCGCGGATGGCGCACGCGGACTCCTTCTCCCGCGCCCCGAGGTTCGAGAA
ACGGCCTTCGTTCCCTGGACTTGTTGCAGAGAAAGGGTTCTGCTTGAACG
CTTCAACGGTGGATGGGAACCGAAACTCTTCTCCGCATTCTCCGCTCAAG
ATCTACGACAAAGGGTCCCCGCGAAGAACCTCAAGGATCCGAACCCCCTT
CTTCGTATTTAAGATCCGTCCAGCAAAAGCAAAGATTTCGTACATCACCG
GACCGCGAAAAAACCGTACCTCTCTACACTGGAGCTTCGCTGCTAAGAAA
ACTCCTCCGCGG
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