mRNA_H-canaliculatus_F_contig14121.3259.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14121.3259.1
Unique NamemRNA_H-canaliculatus_F_contig14121.3259.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14121.3259.1 vs. uniprot
Match: D8LGK6_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK6_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 1.810e-66
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 1
Query:    1 QLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVGHTNADGHQYLPRMLESLQAKTVKQVAACGFHTAALTDAGEMFTWGEGR 315
            +LGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVGHTNADGHQYLPRMLESLQAKTV QVAACGFHTAALT AGE+FTWGEG+
Sbjct:  123 KLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVGHTNADGHQYLPRMLESLQAKTVTQVAACGFHTAALTAAGEIFTWGEGK 227          
BLAST of mRNA_H-canaliculatus_F_contig14121.3259.1 vs. uniprot
Match: B7G795_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G795_PHATC)

HSP 1 Score: 153 bits (387), Expect = 2.040e-43
Identity = 69/105 (65.71%), Postives = 84/105 (80.00%), Query Frame = 1
Query:    1 QLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVGHTNADGHQYLPRMLESLQAKTVKQVAACGFHTAALTDAGEMFTWGEGR 315
            +LGHG+E+GH TP  V+ L   GA V QIACGSRHT ++T  G +YTWGDKENGV GH   +GHQYLPR+LES+ AK V Q++ACGFHTA +TDAGE+FTWGEG+
Sbjct:  116 KLGHGDEAGHATPKRVEAL--VGATVAQIACGSRHTAIVTASGALYTWGDKENGVAGHGETEGHQYLPRLLESMAAKRVAQISACGFHTAIVTDAGELFTWGEGK 218          
BLAST of mRNA_H-canaliculatus_F_contig14121.3259.1 vs. uniprot
Match: A0A7S1GDB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDB4_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.320e-42
Identity = 63/105 (60.00%), Postives = 84/105 (80.00%), Query Frame = 1
Query:    1 QLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVGHTNADGHQYLPRMLESLQAKTVKQVAACGFHTAALTDAGEMFTWGEGR 315
            +LGHGNE+GH  PC+V  L   G  +T++ACGSRHTV LTD G+V++WGD +NGV GH + DGHQYLPR++  L+++  KQVAACGFHTA LT AG++++WGEG+
Sbjct:  114 KLGHGNENGHSRPCVVDVL--SGVHITEVACGSRHTVALTDKGEVFSWGDSDNGVCGHGDGDGHQYLPRLVAGLRSEAAKQVAACGFHTAVLTTAGQVWSWGEGK 216          
BLAST of mRNA_H-canaliculatus_F_contig14121.3259.1 vs. uniprot
Match: A0A2D4CB68_PYTIN (BTB domain-containing protein (Fragment) n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CB68_PYTIN)

HSP 1 Score: 150 bits (380), Expect = 7.600e-41
Identity = 67/105 (63.81%), Postives = 87/105 (82.86%), Query Frame = 1
Query:    1 QLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVGHTNADGHQYLPRMLESLQAKTVKQVAACGFHTAALTDAGEMFTWGEGR 315
            +LGHGNE+GH TPC+V+ L+ +  R  Q+ACGSRHTVVL +   VYTWGDKE GV GH + DGHQYLPR++E L+ + VKQ++ACGFHTAALT++GE+FT+GEG+
Sbjct:  114 KLGHGNETGHSTPCLVEALKAQPVR--QVACGSRHTVVLLENKDVYTWGDKEKGVSGHGDTDGHQYLPRVVEELRGQHVKQISACGFHTAALTESGEVFTFGEGK 216          
BLAST of mRNA_H-canaliculatus_F_contig14121.3259.1 vs. uniprot
Match: A0A7S2A6T9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6T9_TRICV)

HSP 1 Score: 148 bits (374), Expect = 1.540e-40
Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 1
Query:    1 QLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVGHTNADGHQYLPRMLESLQAKTVKQVAACGFHTAALTDAGEMFTWGEGR 315
            +LGHGNESGH TP  V+ L   G  V+QIACGSRHT V+T  G +YTWGDKENGV GH + +GHQY P++LE L  K + Q++ACGFHT  LTDAGE++TWGEG+
Sbjct:   14 KLGHGNESGHSTPRRVEGL--VGLTVSQIACGSRHTAVITSTGALYTWGDKENGVAGHGDTEGHQYTPKLLERLAGKRIVQLSACGFHTGCLTDAGEVYTWGEGK 116          
BLAST of mRNA_H-canaliculatus_F_contig14121.3259.1 vs. uniprot
Match: A0A6V2KJN4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2KJN4_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.040e-40
Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 QLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVGHTNADGHQYLPRMLESLQAKTVKQVAACGFHTAALTDAGEMFTWGEGR 315
            +LGHGNESGH TP  V+ L   G  V+QIACGSRHT V+T  G +YTWGDKENGV GH + +GHQY P++LE L  K V Q++ACGFHT  LTDA E+FTWGEG+
Sbjct:   32 KLGHGNESGHSTPRRVEGL--VGLTVSQIACGSRHTAVITSTGALYTWGDKENGVAGHGDTEGHQYTPKLLERLAGKRVVQLSACGFHTGCLTDAAEVFTWGEGK 134          
BLAST of mRNA_H-canaliculatus_F_contig14121.3259.1 vs. uniprot
Match: A0A7S2R4V3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R4V3_9STRA)

HSP 1 Score: 143 bits (360), Expect = 5.880e-40
Identity = 64/105 (60.95%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 QLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVGHTNADGHQYLPRMLESLQAKTVKQVAACGFHTAALTDAGEMFTWGEGR 315
            +LGHGNESGH TP  ++ L   G  V+QIACGSRHT V+T  G +YTWGDKENGV GH + +GHQY P++LE L  K V Q++ACGFHT  LTD+ E++TWGEG+
Sbjct:   73 KLGHGNESGHSTPKRLEGLT--GLTVSQIACGSRHTAVITSTGAMYTWGDKENGVAGHGDNEGHQYTPKLLEKLAGKRVIQLSACGFHTGCLTDSREVYTWGEGK 175          
BLAST of mRNA_H-canaliculatus_F_contig14121.3259.1 vs. uniprot
Match: A0A7S2PM89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PM89_9STRA)

HSP 1 Score: 143 bits (361), Expect = 8.550e-40
Identity = 66/105 (62.86%), Postives = 78/105 (74.29%), Query Frame = 1
Query:    1 QLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVGHTNADGHQYLPRMLESLQAKTVKQVAACGFHTAALTDAGEMFTWGEGR 315
            +LGHG+ESGH TP  V+ L   G  V  IACGSRHT V+T+ G +YTWGDKENGV GH + DGHQY P++LE L  K V Q++ACGFHT  LTD GE FTWGEG+
Sbjct:   66 KLGHGSESGHSTPRRVEAL--VGLSVIDIACGSRHTAVVTNKGCLYTWGDKENGVAGHGDTDGHQYTPKLLERLSGKKVVQLSACGFHTGCLTDQGECFTWGEGK 168          
BLAST of mRNA_H-canaliculatus_F_contig14121.3259.1 vs. uniprot
Match: A0A5D6YMT2_9STRA (BTB domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YMT2_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.370e-39
Identity = 67/105 (63.81%), Postives = 85/105 (80.95%), Query Frame = 1
Query:    1 QLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVGHTNADGHQYLPRMLESLQAKTVKQVAACGFHTAALTDAGEMFTWGEGR 315
            +LGHGNE+GH TP +V+ L+  G +V Q+ACGSRHTVVL +   VYTWGDKENGV GH   +G QYLP  LE L+ K+VKQ++ACGFHTAALTDAGE++T+G+G+
Sbjct:  136 KLGHGNETGHSTPFLVESLK--GLQVRQVACGSRHTVVLLENRDVYTWGDKENGVSGHGETEGQQYLPSSLEELRGKSVKQISACGFHTAALTDAGEVYTFGDGK 238          
BLAST of mRNA_H-canaliculatus_F_contig14121.3259.1 vs. uniprot
Match: A0A7S2U8G3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8G3_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.830e-39
Identity = 65/105 (61.90%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 QLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVGHTNADGHQYLPRMLESLQAKTVKQVAACGFHTAALTDAGEMFTWGEGR 315
            +LGHGNESGH TP  V+ L   G  V++IACGSRHT V+T  G +Y WGDKENGV GH + +GHQY P++LE L  K V Q++ACGFHT  LTDAGE++TWGEG+
Sbjct:  173 KLGHGNESGHSTPRRVEGL--VGLAVSEIACGSRHTAVITSTGALYVWGDKENGVCGHGDTEGHQYTPKLLERLAGKRVIQLSACGFHTGCLTDAGEIYTWGEGK 275          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14121.3259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGK6_ECTSI1.810e-6695.24BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
B7G795_PHATC2.040e-4365.71Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A7S1GDB4_9STRA1.320e-4260.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A2D4CB68_PYTIN7.600e-4163.81BTB domain-containing protein (Fragment) n=2 Tax=P... [more]
A0A7S2A6T9_TRICV1.540e-4062.86Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6V2KJN4_9STRA4.040e-4063.81Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2R4V3_9STRA5.880e-4060.95Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2PM89_9STRA8.550e-4062.86Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A5D6YMT2_9STRA1.370e-3963.81BTB domain-containing protein n=1 Tax=Pythium bras... [more]
A0A7S2U8G3_9STRA1.830e-3961.90Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14121contigH-canaliculatus_F_contig14121:1824..2557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.5
Seed ortholog evalue6.5e-54
Seed eggNOG ortholog2880.D8LGK6
KEGG koko:K11494
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBTB/POZ
Ec32 orthologEc-10_001680.1
Exons2
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929163.139623-CDS-H-canaliculatus_F_contig14121:1823..19551622929163.139623-CDS-H-canaliculatus_F_contig14121:1823..1955Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14121 1824..1955 +
1696845701.2194266-CDS-H-canaliculatus_F_contig14121:1823..19551696845701.2194266-CDS-H-canaliculatus_F_contig14121:1823..1955Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14121 1824..1955 +
1622929163.1563094-CDS-H-canaliculatus_F_contig14121:2350..25571622929163.1563094-CDS-H-canaliculatus_F_contig14121:2350..2557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14121 2351..2557 +
1696845701.2307217-CDS-H-canaliculatus_F_contig14121:2350..25571696845701.2307217-CDS-H-canaliculatus_F_contig14121:2350..2557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14121 2351..2557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14121.3259.1prot_H-canaliculatus_F_contig14121.3259.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14121 1824..2557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14121.3259.1

>prot_H-canaliculatus_F_contig14121.3259.1 ID=prot_H-canaliculatus_F_contig14121.3259.1|Name=mRNA_H-canaliculatus_F_contig14121.3259.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
QLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGD
KENGVVGHTNADGHQYLPRMLESLQAKTVKQVAACGFHTAALTDAGEMFT
WGEGRKRLRKGR*
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mRNA from alignment at H-canaliculatus_F_contig14121:1824..2557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14121.3259.1 ID=mRNA_H-canaliculatus_F_contig14121.3259.1|Name=mRNA_H-canaliculatus_F_contig14121.3259.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=734bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14121:1824..2557+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCTGGGACACGGCAACGAAAGCGGCCACCCGACGCCCTGCATGGTCAA GCACCTCCGAGACGAGGGGGCTCGGGTGACGCAGATCGCGTGCGGGAGCC GGCACACCGTCGTTCTAACGGACCTGGGAAAGGTCAGCTTCGTTTGCTCC ACGAGCTGTTGGGGGCGCGGGCATGAGACGCGAGAGAGATGAAAGAGACA AGACTTAAGTACATGAGGGTGACTCTTTTCTTTTTTTATTCCGAGAATGT ATGCCGCGCGTGGGTGTGTGATGGCTGCTCGAGACGGGAGAGCGTGGAGG GTTTTTTGTGCCGTGGCGTGCGTTGCGTTGTTGCGGAGGTCTGCGGATGT GCCGCCCGCCGTGTGCTCCTCGAGGGCGAACGAGCGGATCGATGCGTGCG TCGTCCGGGTTTGTTACCGGCGGCGGCGGCGGCGGCGACGGCGAGGCGAT GATCCTGATCCATTTCTTGATGATATGCGGTGGGTTTGATGCCTCTGGGG GCCCCGTCCCGTCCCGTCTGTCCTCAGGTGTACACGTGGGGGGACAAGGA GAACGGGGTGGTGGGGCACACCAACGCGGACGGTCACCAGTACCTTCCCC GTATGCTGGAGTCTCTGCAGGCCAAGACCGTCAAGCAGGTGGCAGCGTGC GGCTTCCACACCGCCGCCCTCACAGACGCCGGAGAGATGTTCACCTGGGG CGAAGGTAGGAAGCGTCTGCGGAAAGGAAGGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14121:1824..2557+

>mRNA_H-canaliculatus_F_contig14121.3259.1 ID=mRNA_H-canaliculatus_F_contig14121.3259.1|Name=mRNA_H-canaliculatus_F_contig14121.3259.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14121:1824..2557+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCTGGGACACGGCAACGAAAGCGGCCACCCGACGCCCTGCATGGTCAA
GCACCTCCGAGACGAGGGGGCTCGGGTGACGCAGATCGCGTGCGGGAGCC
GGCACACCGTCGTTCTAACGGACCTGGGAAAGCAGCTGGGACACGGCAAC
GAAAGCGGCCACCCGACGCCCTGCATGGTCAAGCACCTCCGAGACGAGGG
GGCTCGGGTGACGCAGATCGCGTGCGGGAGCCGGCACACCGTCGTTCTAA
CGGACCTGGGAAAGGTGTACACGTGGGGGGACAAGGAGAACGGGGTGGTG
GGGCACACCAACGCGGACGGTCACCAGTACCTTCCCCGTATGCTGGAGTC
TCTGCAGGCCAAGACCGTCAAGCAGGTGGCAGCGTGCGGCTTCCACACCG
CCGCCCTCACAGACGCCGGAGAGATGTTCACCTGGGGCGAAGGTAGGAAG
CGTCTGCGGAAAGGAAGGTAGGTGTACACGTGGGGGGACAAGGAGAACGG
GGTGGTGGGGCACACCAACGCGGACGGTCACCAGTACCTTCCCCGTATGC
TGGAGTCTCTGCAGGCCAAGACCGTCAAGCAGGTGGCAGCGTGCGGCTTC
CACACCGCCGCCCTCACAGACGCCGGAGAGATGTTCACCTGGGGCGAAGG
TAGGAAGCGTCTGCGGAAAGGAAGGTAG
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