mRNA_H-canaliculatus_F_contig141.3246.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig141.3246.1
Unique NamemRNA_H-canaliculatus_F_contig141.3246.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig141.3246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig141contigH-canaliculatus_F_contig141:44886..45417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.8434427-CDS-H-canaliculatus_F_contig141:44885..452481622929160.8434427-CDS-H-canaliculatus_F_contig141:44885..45248Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig141 44886..45248 +
1696845700.0778887-CDS-H-canaliculatus_F_contig141:44885..452481696845700.0778887-CDS-H-canaliculatus_F_contig141:44885..45248Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig141 44886..45248 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.8653128-UTR-H-canaliculatus_F_contig141:45248..454171622929160.8653128-UTR-H-canaliculatus_F_contig141:45248..45417Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig141 45249..45417 +
1696845700.0864973-UTR-H-canaliculatus_F_contig141:45248..454171696845700.0864973-UTR-H-canaliculatus_F_contig141:45248..45417Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig141 45249..45417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig141.3246.1prot_H-canaliculatus_F_contig141.3246.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig141 44886..45248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig141.3246.1

>prot_H-canaliculatus_F_contig141.3246.1 ID=prot_H-canaliculatus_F_contig141.3246.1|Name=mRNA_H-canaliculatus_F_contig141.3246.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
TPLLAKTPVPKRNGRNKGLESAQRQLCSGEGCQCRNYISNFTILRVPQTR
PRLVSGGLQHCNVRVGVSFRREGTEQCAKVRKLQPGNRARVRVFFTYACA
CMVRCTHPVFCAVAGVDPKD*
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mRNA from alignment at H-canaliculatus_F_contig141:44886..45417+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig141.3246.1 ID=mRNA_H-canaliculatus_F_contig141.3246.1|Name=mRNA_H-canaliculatus_F_contig141.3246.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=532bp|location=Sequence derived from alignment at H-canaliculatus_F_contig141:44886..45417+ (Hapterophycus canaliculatus Oshoro5f female)
ACACCGCTGTTGGCGAAGACGCCGGTCCCCAAGAGAAACGGCAGAAATAA
AGGGCTGGAGAGTGCACAACGTCAGCTGTGCAGCGGTGAGGGTTGTCAGT
GTAGGAACTACATCAGCAATTTCACGATTCTCCGTGTCCCTCAAACACGA
CCAAGACTTGTCAGCGGTGGACTGCAACATTGCAACGTGCGAGTTGGTGT
CTCATTTCGGCGAGAGGGCACCGAGCAATGTGCCAAGGTGCGAAAGCTTC
AGCCCGGAAATCGGGCTCGCGTCCGCGTGTTTTTTACGTATGCGTGTGCT
TGTATGGTAAGATGTACCCACCCAGTATTTTGTGCCGTCGCAGGCGTTGA
CCCGAAGGACTGAATCCCACGTTCAAAAGTTCGTGTCCGTTCCCACCTCT
CTCCTCTCTCCCACACGTCACACCATCACAGCTGTCAAAACAGCTGTCAA
AGCTGTGTCACCTTTCTAAATTTTTACCAACTCTCCATCTCTCCTGCTAT
CCATTTCACAGCTGCTATGGAGCAGTTGCACA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig141:44886..45417+

>mRNA_H-canaliculatus_F_contig141.3246.1 ID=mRNA_H-canaliculatus_F_contig141.3246.1|Name=mRNA_H-canaliculatus_F_contig141.3246.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig141:44886..45417+ (Hapterophycus canaliculatus Oshoro5f female)
ACACCGCTGTTGGCGAAGACGCCGGTCCCCAAGAGAAACGGCAGAAATAA
AGGGCTGGAGAGTGCACAACGTCAGCTGTGCAGCGGTGAGGGTTGTCAGT
GTAGGAACTACATCAGCAATTTCACGATTCTCCGTGTCCCTCAAACACGA
CCAAGACTTGTCAGCGGTGGACTGCAACATTGCAACGTGCGAGTTGGTGT
CTCATTTCGGCGAGAGGGCACCGAGCAATGTGCCAAGGTGCGAAAGCTTC
AGCCCGGAAATCGGGCTCGCGTCCGCGTGTTTTTTACGTATGCGTGTGCT
TGTATGGTAAGATGTACCCACCCAGTATTTTGTGCCGTCGCAGGCGTTGA
CCCGAAGGACTGAACACCGCTGTTGGCGAAGACGCCGGTCCCCAAGAGAA
ACGGCAGAAATAAAGGGCTGGAGAGTGCACAACGTCAGCTGTGCAGCGGT
GAGGGTTGTCAGTGTAGGAACTACATCAGCAATTTCACGATTCTCCGTGT
CCCTCAAACACGACCAAGACTTGTCAGCGGTGGACTGCAACATTGCAACG
TGCGAGTTGGTGTCTCATTTCGGCGAGAGGGCACCGAGCAATGTGCCAAG
GTGCGAAAGCTTCAGCCCGGAAATCGGGCTCGCGTCCGCGTGTTTTTTAC
GTATGCGTGTGCTTGTATGGTAAGATGTACCCACCCAGTATTTTGTGCCG
TCGCAGGCGTTGACCCGAAGGACTGA
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