mRNA_H-canaliculatus_F_contig141.3244.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig141.3244.1
Unique NamemRNA_H-canaliculatus_F_contig141.3244.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig141.3244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig141contigH-canaliculatus_F_contig141:41152..41660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size509
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig141.3244.1prot_H-canaliculatus_F_contig141.3244.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig141 41232..41573 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.7655196-UTR-H-canaliculatus_F_contig141:41151..412311622929160.7655196-UTR-H-canaliculatus_F_contig141:41151..41231Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig141 41152..41231 +
1696845700.052924-UTR-H-canaliculatus_F_contig141:41151..412311696845700.052924-UTR-H-canaliculatus_F_contig141:41151..41231Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig141 41152..41231 +
1622929160.7920349-UTR-H-canaliculatus_F_contig141:41573..416601622929160.7920349-UTR-H-canaliculatus_F_contig141:41573..41660Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig141 41574..41660 +
1696845700.0696738-UTR-H-canaliculatus_F_contig141:41573..416601696845700.0696738-UTR-H-canaliculatus_F_contig141:41573..41660Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig141 41574..41660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.7783885-CDS-H-canaliculatus_F_contig141:41231..415731622929160.7783885-CDS-H-canaliculatus_F_contig141:41231..41573Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig141 41232..41573 +
1696845700.0616238-CDS-H-canaliculatus_F_contig141:41231..415731696845700.0616238-CDS-H-canaliculatus_F_contig141:41231..41573Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig141 41232..41573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig141.3244.1

>prot_H-canaliculatus_F_contig141.3244.1 ID=prot_H-canaliculatus_F_contig141.3244.1|Name=mRNA_H-canaliculatus_F_contig141.3244.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=114bp
MGTCRALRAGGLCPWYRKKGIASTTRVRKSIYSAGRVEVRRALCCWFGLK
AVEDSEKPCATHSVDCERGTDRSTEREEGGVQGGSKDGKVEVKMSVLNPG
EVKMSNLLPSVHR*
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mRNA from alignment at H-canaliculatus_F_contig141:41152..41660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig141.3244.1 ID=mRNA_H-canaliculatus_F_contig141.3244.1|Name=mRNA_H-canaliculatus_F_contig141.3244.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=509bp|location=Sequence derived from alignment at H-canaliculatus_F_contig141:41152..41660+ (Hapterophycus canaliculatus Oshoro5f female)
GTGAGGGAAGACACCGACGACGGGCGGGAGGCCCCGGCAGCCGCCTGCTG
GATGAACGGAGCGGGCGGAAAAGGTGGCGGATGGGTACGTGCCGTGCTCT
CAGGGCCGGGGGCCTGTGTCCCTGGTACCGGAAGAAAGGGATCGCCAGCA
CAACCCGCGTGCGGAAATCGATATATAGCGCCGGAAGAGTAGAAGTGCGG
CGTGCGTTGTGTTGTTGGTTCGGTTTGAAAGCTGTGGAAGACTCCGAGAA
GCCGTGTGCAACACACTCTGTTGACTGCGAGAGAGGCACAGACCGATCGA
CAGAGAGAGAGGAGGGGGGGGTGCAGGGGGGATCGAAGGACGGAAAGGTT
GAGGTGAAGATGTCCGTGTTAAACCCGGGAGAGGTGAAGATGTCCAATCT
CCTCCCCAGCGTACATCGTTAGGCATTTTTCTGTCTGAACATAGTTGTAT
CTCTCTTTTTCTCTCTCAGTGTACCGTAAACCGACCAAGGTGGCGGGAAA
TAGCCCCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig141:41152..41660+

>mRNA_H-canaliculatus_F_contig141.3244.1 ID=mRNA_H-canaliculatus_F_contig141.3244.1|Name=mRNA_H-canaliculatus_F_contig141.3244.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig141:41152..41660+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTACGTGCCGTGCTCTCAGGGCCGGGGGCCTGTGTCCCTGGTACCG
GAAGAAAGGGATCGCCAGCACAACCCGCGTGCGGAAATCGATATATAGCG
CCGGAAGAGTAGAAGTGCGGCGTGCGTTGTGTTGTTGGTTCGGTTTGAAA
GCTGTGGAAGACTCCGAGAAGCCGTGTGCAACACACTCTGTTGACTGCGA
GAGAGGCACAGACCGATCGACAGAGAGAGAGGAGGGGGGGGTGCAGGGGG
GATCGAAGGACGGAAAGGTTGAGGTGAAGATGTCCGTGTTAAACCCGGGA
GAGGTGAAGATGTCCAATCTCCTCCCCAGCGTACATCGTTAGATGGGTAC
GTGCCGTGCTCTCAGGGCCGGGGGCCTGTGTCCCTGGTACCGGAAGAAAG
GGATCGCCAGCACAACCCGCGTGCGGAAATCGATATATAGCGCCGGAAGA
GTAGAAGTGCGGCGTGCGTTGTGTTGTTGGTTCGGTTTGAAAGCTGTGGA
AGACTCCGAGAAGCCGTGTGCAACACACTCTGTTGACTGCGAGAGAGGCA
CAGACCGATCGACAGAGAGAGAGGAGGGGGGGGTGCAGGGGGGATCGAAG
GACGGAAAGGTTGAGGTGAAGATGTCCGTGTTAAACCCGGGAGAGGTGAA
GATGTCCAATCTCCTCCCCAGCGTACATCGTTAG
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