mRNA_H-canaliculatus_F_contig141.3240.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig141.3240.1
Unique NamemRNA_H-canaliculatus_F_contig141.3240.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig141.3240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig141contigH-canaliculatus_F_contig141:10605..10898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size281
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig141.3240.1prot_H-canaliculatus_F_contig141.3240.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig141 10707..10860 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.6841364-UTR-H-canaliculatus_F_contig141:10604..107061622929160.6841364-UTR-H-canaliculatus_F_contig141:10604..10706Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig141 10605..10706 -
1696845700.0125992-UTR-H-canaliculatus_F_contig141:10604..107061696845700.0125992-UTR-H-canaliculatus_F_contig141:10604..10706Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig141 10605..10706 -
1622929160.7266037-UTR-H-canaliculatus_F_contig141:10860..108981622929160.7266037-UTR-H-canaliculatus_F_contig141:10860..10898Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig141 10861..10898 -
1696845700.0413606-UTR-H-canaliculatus_F_contig141:10860..108981696845700.0413606-UTR-H-canaliculatus_F_contig141:10860..10898Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig141 10861..10898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.698797-CDS-H-canaliculatus_F_contig141:10706..107421622929160.698797-CDS-H-canaliculatus_F_contig141:10706..10742Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig141 10707..10742 -
1696845700.020762-CDS-H-canaliculatus_F_contig141:10706..107421696845700.020762-CDS-H-canaliculatus_F_contig141:10706..10742Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig141 10707..10742 -
1622929160.7127638-CDS-H-canaliculatus_F_contig141:10755..108601622929160.7127638-CDS-H-canaliculatus_F_contig141:10755..10860Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig141 10756..10860 -
1696845700.0300767-CDS-H-canaliculatus_F_contig141:10755..108601696845700.0300767-CDS-H-canaliculatus_F_contig141:10755..10860Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig141 10756..10860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig141.3240.1

>prot_H-canaliculatus_F_contig141.3240.1 ID=prot_H-canaliculatus_F_contig141.3240.1|Name=mRNA_H-canaliculatus_F_contig141.3240.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=47bp
MESVARRKGYSSARIGGWAAAAPAIAHFTSCIPCMHNNQAKGTQVR*
back to top

mRNA from alignment at H-canaliculatus_F_contig141:10605..10898-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig141.3240.1 ID=mRNA_H-canaliculatus_F_contig141.3240.1|Name=mRNA_H-canaliculatus_F_contig141.3240.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=294bp|location=Sequence derived from alignment at H-canaliculatus_F_contig141:10605..10898- (Hapterophycus canaliculatus Oshoro5f female)
TGGTAGGTGGCGGCGAGGTTGTGAAGCAGGATAAGATCATGGAGAGTGTG
GCGCGAAGAAAGGGCTACAGCAGTGCAAGGATAGGAGGATGGGCAGCGGC
AGCGCCCGCCATTGCACACTTTACATCATGTATCCCATGCATGGCCCATG
CATGAGCACAACAACCAAGCAAAGGGGACACAAGTGCGTTAGTAGTGCTC
TCCGTTGCCCAAAACAACAGATGGGCTTTAAGCTTTTCCTGAACTCCACG
CCGAGAGGCAGAAGCGGAGATGATCGCAACGGCGCGAACACGGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig141:10605..10898-

>mRNA_H-canaliculatus_F_contig141.3240.1 ID=mRNA_H-canaliculatus_F_contig141.3240.1|Name=mRNA_H-canaliculatus_F_contig141.3240.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=282bp|location=Sequence derived from alignment at H-canaliculatus_F_contig141:10605..10898- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGAGTGTGGCGCGAAGAAAGGGCTACAGCAGTGCAAGGATAGGAGG
ATGGGCAGCGGCAGCGCCCGCCATTGCACACTTTACATCATGTATCCCAT
GCATGATGGAGAGTGTGGCGCGAAGAAAGGGCTACAGCAGTGCAAGGATA
GGAGGATGGGCAGCGGCAGCGCCCGCCATTGCACACTTTACATCATGTAT
CCCATGCATGCACAACAACCAAGCAAAGGGGACACAAGTGCGTTAGCACA
ACAACCAAGCAAAGGGGACACAAGTGCGTTAG
back to top