mRNA_H-canaliculatus_F_contig14095.3238.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14095.3238.1
Unique NamemRNA_H-canaliculatus_F_contig14095.3238.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14095.3238.1 vs. uniprot
Match: UPI000A2A5885 (uncharacterized protein LOC110247739 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5885)

HSP 1 Score: 58.2 bits (139), Expect = 7.390e-9
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 LHTGHHKDHGLVFQQLVLANGMIGDLNGPHPGRRHDVTYLDLS 129
            ++ GH + HG+ FQ +VL NG+IG+L+GP+ GRRHD T L  S
Sbjct:   82 VYNGHKRVHGIKFQSVVLPNGLIGNLDGPYEGRRHDSTMLYYS 124
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14095.3238.1 vs. uniprot
Match: UPI00160537E2 (protein ALP1-like n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI00160537E2)

HSP 1 Score: 57.4 bits (137), Expect = 1.960e-8
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 LHTGHHKDHGLVFQQLVLANGMIGDLNGPHPGRRHDVTYL 120
            L++GH + HG+ FQ +V  NG+IG+L GP+PGRRHD   L
Sbjct:  177 LYSGHKRIHGIKFQSVVFPNGIIGNLRGPYPGRRHDCYML 216
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14095.3238.1 vs. uniprot
Match: UPI001604DA6B (uncharacterized protein LOC118435899 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI001604DA6B)

HSP 1 Score: 53.1 bits (126), Expect = 3.400e-7
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 LHTGHHKDHGLVFQQLVLANGMIGDLNGPHPGRRHDVTYLDLS 129
            +++GH + HGL +Q +V  NGM+ +L GP PGRRHD   L  S
Sbjct:   95 VYSGHKRSHGLKYQSVVTPNGMVANLYGPIPGRRHDSYMLHES 137
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14095.3238.1 vs. uniprot
Match: UPI001604E143 (uncharacterized protein LOC118434494 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI001604E143)

HSP 1 Score: 53.1 bits (126), Expect = 4.620e-7
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 LHTGHHKDHGLVFQQLVLANGMIGDLNGPHPGRRHDVTYLDLS 129
            +++GH + HGL +Q +V  NGM+ +L GP PGRRHD   L  S
Sbjct:   64 VYSGHKRSHGLKYQSVVTPNGMVANLYGPIPGRRHDSYMLHES 106
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14095.3238.1 vs. uniprot
Match: A0A226ERU5_FOLCA (DDE Tnp4 domain-containing protein n=7 Tax=Folsomia candida TaxID=158441 RepID=A0A226ERU5_FOLCA)

HSP 1 Score: 53.1 bits (126), Expect = 5.850e-7
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 LHTGHHKDHGLVFQQLVLANGMIGDLNGPHPGRRHDVTYLDLS 129
            +++GH + HGL +Q +V  NGM+ +L GP PGRRHD   L  S
Sbjct:  148 VYSGHKRSHGLKYQSVVTPNGMVANLYGPIPGRRHDSYMLHES 190
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14095.3238.1 vs. uniprot
Match: A0A5N4AB13_PHOPY (DDE Tnp4 domain-containing protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AB13_PHOPY)

HSP 1 Score: 52.4 bits (124), Expect = 8.290e-7
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    4 HTGHHKDHGLVFQQLVLANGMIGDLNGPHPGRRHDVTYLDLS 129
            ++G+ K H L +Q +V  NG+IG L+GP  GRRHD   L+LS
Sbjct:   64 YSGYKKQHMLKYQSIVFPNGLIGRLDGPFIGRRHDAAILNLS 105
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14095.3238.1 vs. uniprot
Match: A0A226EAR4_FOLCA (DDE Tnp4 domain-containing protein n=2 Tax=Folsomia candida TaxID=158441 RepID=A0A226EAR4_FOLCA)

HSP 1 Score: 52.8 bits (125), Expect = 8.670e-7
Identity = 21/43 (48.84%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 LHTGHHKDHGLVFQQLVLANGMIGDLNGPHPGRRHDVTYLDLS 129
            +++G++K H L +Q ++L NG+IG L+GP  GRRHD   L LS
Sbjct:  195 VYSGYYKTHTLKYQSIMLPNGIIGRLDGPFNGRRHDSAILGLS 237
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14095.3238.1 vs. uniprot
Match: A0A226DFP6_FOLCA (DDE Tnp4 domain-containing protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DFP6_FOLCA)

HSP 1 Score: 52.4 bits (124), Expect = 9.640e-7
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 LHTGHHKDHGLVFQQLVLANGMIGDLNGPHPGRRHDVTYLDLS 129
            +++GH + HGL +Q +V  NGM+ ++ GP PGRRHD   L  S
Sbjct:  184 VYSGHKRSHGLKYQSVVTPNGMVANIYGPIPGRRHDSYMLHES 226
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14095.3238.1 vs. uniprot
Match: A0A6A3MJM0_9STRA (DDE Tnp4 domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MJM0_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.020e-6
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 LHTGHHKDHGLVFQQLVLANGMIGDLNGPHPGRRHDVTYLDLS 129
            L++GH + HG+ FQ + +ANGMI  + GP  GRRHD   L+ S
Sbjct:   59 LYSGHKRKHGIKFQNITMANGMIVSMFGPIEGRRHDSFMLEES 101
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14095.3238.1 vs. uniprot
Match: A0A8J2JSC0_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2JSC0_9HEXA)

HSP 1 Score: 52.4 bits (124), Expect = 1.110e-6
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    4 HTGHHKDHGLVFQQLVLANGMIGDLNGPHPGRRHDVTYLDLS 129
            ++G+ K+H L +Q +V  NG+IG L+GP  GRRHD   L LS
Sbjct:  121 YSGYKKEHCLKYQSVVFPNGLIGRLDGPFNGRRHDAAILHLS 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14095.3238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
UPI000A2A58857.390e-953.49uncharacterized protein LOC110247739 n=1 Tax=Exaip... [more]
UPI00160537E21.960e-855.00protein ALP1-like n=1 Tax=Folsomia candida TaxID=1... [more]
UPI001604DA6B3.400e-748.84uncharacterized protein LOC118435899 n=1 Tax=Folso... [more]
UPI001604E1434.620e-748.84uncharacterized protein LOC118434494 n=1 Tax=Folso... [more]
A0A226ERU5_FOLCA5.850e-748.84DDE Tnp4 domain-containing protein n=7 Tax=Folsomi... [more]
A0A5N4AB13_PHOPY8.290e-750.00DDE Tnp4 domain-containing protein n=1 Tax=Photinu... [more]
A0A226EAR4_FOLCA8.670e-748.84DDE Tnp4 domain-containing protein n=2 Tax=Folsomi... [more]
A0A226DFP6_FOLCA9.640e-746.51DDE Tnp4 domain-containing protein n=1 Tax=Folsomi... [more]
A0A6A3MJM0_9STRA1.020e-648.84DDE Tnp4 domain-containing protein n=2 Tax=Phytoph... [more]
A0A8J2JSC0_9HEXA1.110e-650.00Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14095contigH-canaliculatus_F_contig14095:663..794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.5299904-CDS-H-canaliculatus_F_contig14095:662..7941622929160.5299904-CDS-H-canaliculatus_F_contig14095:662..794Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14095 663..794 -
1696845699.9714785-CDS-H-canaliculatus_F_contig14095:662..7941696845699.9714785-CDS-H-canaliculatus_F_contig14095:662..794Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14095 663..794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14095.3238.1prot_H-canaliculatus_F_contig14095.3238.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14095 663..794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14095.3238.1

>prot_H-canaliculatus_F_contig14095.3238.1 ID=prot_H-canaliculatus_F_contig14095.3238.1|Name=mRNA_H-canaliculatus_F_contig14095.3238.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=44bp
LHTGHHKDHGLVFQQLVLANGMIGDLNGPHPGRRHDVTYLDLS*
back to top

mRNA from alignment at H-canaliculatus_F_contig14095:663..794-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14095.3238.1 ID=mRNA_H-canaliculatus_F_contig14095.3238.1|Name=mRNA_H-canaliculatus_F_contig14095.3238.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=132bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14095:663..794- (Hapterophycus canaliculatus Oshoro5f female)
CTCCACACAGGCCACCACAAGGATCATGGCCTGGTTTTCCAGCAGCTCGT
TCTGGCCAACGGAATGATTGGGGACTTGAATGGCCCACACCCAGGAAGAC
GGCACGATGTAACATACCTCGATCTTAGTTAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14095:663..794-

>mRNA_H-canaliculatus_F_contig14095.3238.1 ID=mRNA_H-canaliculatus_F_contig14095.3238.1|Name=mRNA_H-canaliculatus_F_contig14095.3238.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=264bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14095:663..794- (Hapterophycus canaliculatus Oshoro5f female)
CTCCACACAGGCCACCACAAGGATCATGGCCTGGTTTTCCAGCAGCTCGT
TCTGGCCAACGGAATGATTGGGGACTTGAATGGCCCACACCCAGGAAGAC
GGCACGATGTAACATACCTCGATCTTAGTTAGCTCCACACAGGCCACCAC
AAGGATCATGGCCTGGTTTTCCAGCAGCTCGTTCTGGCCAACGGAATGAT
TGGGGACTTGAATGGCCCACACCCAGGAAGACGGCACGATGTAACATACC
TCGATCTTAGTTAG
back to top