mRNA_H-canaliculatus_F_contig14093.3237.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig14093.3237.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.000e-20 Identity = 107/190 (56.32%), Postives = 118/190 (62.11%), Query Frame = 1
Query: 1 GKFEEAQPLYERSQAIREKVLGPEHPDVASSLNNRAGLLKAQGDYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSQVRARRCFELLRD-----------------------ASRRKCSSEVLDLILTKIQLCRAFHDCVQGKYAEAEPLYERCQAIHEKALGPEHPHVATTLNNRAGLLKKQ 501
GK+EEA PLYERS AIREKVLGP+HPDVA SLNNRA L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A + L L+L C +C++GKY +AEPLYERCQAI+EK LGPEHP+VATTLNNRAGLL+ Q
Sbjct: 799 GKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAXATPSTVPQLKLLL----YCAV--NCIKGKYTDAEPLYERCQAIYEKRLGPEHPYVATTLNNRAGLLEAQ 982
BLAST of mRNA_H-canaliculatus_F_contig14093.3237.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.900e-20 Identity = 63/153 (41.18%), Postives = 72/153 (47.06%), Query Frame = 1
Query: 43 AIREKVLGPEHPDVASSLNNRAGLLKAQGDYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSQVRARRCFELLRDASRRKCSSEVLDLILTKIQLCRAFHDCVQGKYAEAEPLYERCQAIHEKALGPEHPHVATTLNNRAGLLKKQ 501
AIREKVLGPEHPDVA+SLNNRAGLL RKC S + I T + C+QGKY+EAEPLY+RCQA+ KALGPEHP +A TLNNRA LL+ Q
Sbjct: 136 AIREKVLGPEHPDVAASLNNRAGLL------------------------------------------------------------RKCFSTIPFTIFTLKHDSSRYPHCIQGKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRAQ 228
BLAST of mRNA_H-canaliculatus_F_contig14093.3237.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 9.360e-19 Identity = 92/167 (55.09%), Postives = 103/167 (61.68%), Query Frame = 1
Query: 1 GKFEEAQPLYERSQAIREKVLGPEHPDVASSLNNRAGLLKAQGDYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSQVRARRCFELLRDASRRKCSSEVLDLILTKIQLCRAFHDCVQGKYAEAEPLYERCQAIHEKALGPEHPHVATTLNNRAGLLKKQ 501
GK+++A PLY+RS AI EKV GP+HPDVA SLNNRA LL+AQ XXXXXXXXXXXXXXXXXXXXXXXX SQ+ + R ELLR QGKY +AEPL ER Q I EK LGPEHP VA +LNNRAGLL+ Q
Sbjct: 417 GKYDQAGPLYDRSLAILEKVHGPDHPDVAQSLNNRAELLRAQ--------------XXXXXXXXXXXXXXXXXXXXXXXXLESQLLSNRA-ELLR----------------------------AQGKYDDAEPLNERSQTIREKVLGPEHPDVAQSLNNRAGLLEAQ 540
BLAST of mRNA_H-canaliculatus_F_contig14093.3237.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 3.710e-18 Identity = 99/168 (58.93%), Postives = 111/168 (66.07%), Query Frame = 1
Query: 1 GKFEEAQPLYERSQAIREKVLGPEHPDVASSLNNRAGLLKAQGDYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSQVRARRCFELLRDASRRKCSSEVLDLILTKIQ---LCRAFHDCVQGKYAEAEPLYERCQAIHEKALGPEHPHVATTLNNRAGLLK 495
GK+EEA+PLY S AI EKV GP+H +VA LNN AGLL + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SQ +R KC L L T + + + QG YAEA+PLYER QAI +K LGP+HP VAT LNNRAGLLK
Sbjct: 88 GKYEEAEPLYMLSLAIDEKVYGPDHLEVAEDLNNCAGLLSIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLESQALNKRV------GVEGKC----LCLFATSYRPHFVWLNYEYICQGNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLLK 245
BLAST of mRNA_H-canaliculatus_F_contig14093.3237.1 vs. uniprot
Match: D7G3B0_ECTSI (Tetratricopeptide repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B0_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 1.810e-15 Identity = 107/237 (45.15%), Postives = 124/237 (52.32%), Query Frame = 1
Query: 1 GKFEEAQPLYERSQAIREKVLGPEHPDVASSLNNRAGLLKAQGDYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSQVRARRCFELLRDASRRKCSSEVLDLILTKIQLCRA----------------------------------------------------------------------FHDCVQGKYAEAEPLYERCQAIHEKALGPEHPHVATTLNNRAGLLKKQ 501
G+F EA+PLY+RSQAIRE VLGPEH DVA++L+ RAGLL+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +SQV L D S S +LDLI +I+LCRA F D QGKYAEAE LYER +AI +K L P+HP VA +LN+RA LL K+
Sbjct: 22 GEFAEAEPLYDRSQAIRENVLGPEHADVATTLSGRAGLLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLSQV----TMPLEEDNS-----SAILDLIRAEIRLCRAVCPLHIMFLRLETKRWALTTTILARANNRTGLLKNQVRAQATIPKLTLVGSTLSSEILFSFLVHCRTLSHFTDA-QGKYAEAEQLYERSEAIRDKTLDPDHPDVARSLNDRALLLDKK 248
BLAST of mRNA_H-canaliculatus_F_contig14093.3237.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 4.480e-15 Identity = 64/167 (38.32%), Postives = 74/167 (44.31%), Query Frame = 1
Query: 1 GKFEEAQPLYERSQAIREKVLGPEHPDVASSLNNRAGLLKAQGDYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSQVRARRCFELLRDASRRKCSSEVLDLILTKIQLCRAFHDCVQGKYAEAEPLYERCQAIHEKALGPEHPHVATTLNNRAGLLKKQ 501
G ++EA LYERS AI EK LGP+HPDVA SLNN A LL++QG ++ + F L K S L VQG+YAE EP Y R I EKALGP HP VAT LNNRA LL+ Q
Sbjct: 500 GNYDEAGKLYERSLAISEKALGPDHPDVAQSLNNWALLLESQG---------VVVEGTGGSHQKISGNFLWYPIDSGMLNDAAEFLSICSFAFLISTWHLKNDSMTLPTF-------------VQGEYAEGEPQYARATYIWEKALGPAHPQVATALNNRALLLESQ 644
BLAST of mRNA_H-canaliculatus_F_contig14093.3237.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 1.540e-13 Identity = 83/154 (53.90%), Postives = 94/154 (61.04%), Query Frame = 1
Query: 40 QAIREKVLGPEHPDVASSLNNRAGLLKAQGDYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSQVRARRCFELLRDASRRKCSSEVLDLILTKIQLCRAFHDCVQGKYAEAEPLYERCQAIHEKALGPEHPHVATTLNNRAGLLKKQ 501
QAI+E++LGPEH DVA SL NRA LL+AQG+Y XXXXXXXXXXXXXXXXXXXXXXXXX E D +T +QG+YAEAEPLY R I E+ALGPEHP VAT LNNRAGLL++Q
Sbjct: 570 QAIQEQILGPEHLDVAMSLINRAQLLRAQGNYDDAEPLYERSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV-----------------EESDDFVT-------LPTYIQGEYAEAEPLYARATEIWERALGPEHPLVATALNNRAGLLERQ 699
BLAST of mRNA_H-canaliculatus_F_contig14093.3237.1 vs. uniprot
Match: A0A6H5JSR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR2_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 3.050e-13 Identity = 88/165 (53.33%), Postives = 97/165 (58.79%), Query Frame = 1
Query: 7 FEEAQPLYERSQAIREKVLGPEHPDVASSLNNRAGLLKAQGDYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSQVRARRCFELLRDASRRKCSSEVLDLILTKIQLCRAFHDCVQGKYAEAEPLYERCQAIHEKALGPEHPHVATTLNNRAGLLKKQ 501
++EA+PLYERSQAIREK LGP+HPDVA SLN RA LL Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VQGK+AEAE L E QAIH+KALGPEH VA +L+NRA L +Q
Sbjct: 2 YDEAEPLYERSQAIREKALGPKHPDVARSLNKRAWLLCRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR----------------------------------------------VQGKHAEAETLSELSQAIHQKALGPEHSDVALSLSNRADELYRQ 120
BLAST of mRNA_H-canaliculatus_F_contig14093.3237.1 vs. uniprot
Match: A0A6H5JIH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH9_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 1.350e-12 Identity = 82/160 (51.25%), Postives = 91/160 (56.88%), Query Frame = 1
Query: 1 GKFEEAQPLYERSQAIREKVLGPEHPDVASSLNNRAGLLKAQGDYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSQVRARRCFELLRDASRRKCSSEVLDLILTKIQLCRAFHDCVQGKYAEAEPLYERCQAIHEKALGPEHPHVATTLNNR 480
GK+ E +PLYE+SQAI EKVLGPEHPDVA+ L R XXXXXXXXXXXXXXXXXXXXXXXXXX + D S +S L + + QGKYAE EPLYE+ QAI EK LGPEHP VAT L R
Sbjct: 929 GKYAEPEPLYEQSQAITEKVLGPEHPDVATVLKKRCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRCSRDEXXXXXXXTLSVVAYDRSSSGSASRYLPWLSVRT--------ACQGKYAEPEPLYEQSQAITEKVLGPEHPDVATVLKKR 1080
BLAST of mRNA_H-canaliculatus_F_contig14093.3237.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 2.090e-12 Identity = 56/167 (33.53%), Postives = 68/167 (40.72%), Query Frame = 1
Query: 1 GKFEEAQPLYERSQAIREKVLGPEHPDVASSLNNRAGLLKAQGDYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSQVRARRCFELLRDASRRKCSSEVLDLILTKIQLCRAFHDCVQGKYAEAEPLYERCQAIHEKALGPEHPHVATTLNNRAGLLKKQ 501
GKFEEA+ +Y S +I +K GP+HP++A+ LNN AGLL +Q A F L AF QGKY AEPLY R AI EK GP+HP VAT+LNNRA L+ Q
Sbjct: 339 GKFEEAETIYRHSMSILKKTHGPDHPEIATGLNNWAGLLSSQHHEAN-------------------------------------------FSL-------------------------AFRVPCQGKYDAAEPLYVRSLAIREKVYGPDHPEVATSLNNRAEFLRHQ 437 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14093.3237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig14093.3237.1 >prot_H-canaliculatus_F_contig14093.3237.1 ID=prot_H-canaliculatus_F_contig14093.3237.1|Name=mRNA_H-canaliculatus_F_contig14093.3237.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=282bp GKFEEAQPLYERSQAIREKVLGPEHPDVASSLNNRAGLLKAQGDYAGAEPback to top mRNA from alignment at H-canaliculatus_F_contig14093:608..2407+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig14093.3237.1 ID=mRNA_H-canaliculatus_F_contig14093.3237.1|Name=mRNA_H-canaliculatus_F_contig14093.3237.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1800bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14093:608..2407+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14093:608..2407+ >mRNA_H-canaliculatus_F_contig14093.3237.1 ID=mRNA_H-canaliculatus_F_contig14093.3237.1|Name=mRNA_H-canaliculatus_F_contig14093.3237.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1692bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14093:608..2407+ (Hapterophycus canaliculatus Oshoro5f female)back to top |