mRNA_H-canaliculatus_F_contig14091.3236.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14091.3236.1
Unique NamemRNA_H-canaliculatus_F_contig14091.3236.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14091.3236.1 vs. uniprot
Match: A0A250X3I7_9CHLO (USP domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X3I7_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 3.900e-8
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 1
Query:    7 LYDLDGVIQHEGKSITSGHFSTFVRMDTTKWRHFNDAKVSEVDGAKAVNENAVLLMYTRRPPR 195
            +YDL GV+ H+G S+ SGH+ +FVR  T  W   +D  V +V     + + A +L Y RR PR
Sbjct:  343 MYDLYGVLVHQGHSVHSGHYYSFVRGPTGLWYRCDDTSVGQVGERMVLAQQAYILFYIRRQPR 405          
BLAST of mRNA_H-canaliculatus_F_contig14091.3236.1 vs. uniprot
Match: A0A7S2U9T2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9T2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.800e-8
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    7 LYDLDGVIQHEGKSITSGHFSTFVRMDTT-KWRHFNDAKVSEVDGAKAVNENAVLLMYTRRPPR 195
            LYDL GV+ H+G +++ GH+   ++ +   KWR FNDA+V EV+    V+ +A +L Y RR  R
Sbjct:   41 LYDLYGVVHHQG-ALSGGHYVASLKSEVDGKWRMFNDAQVYEVNSRDIVDSSAYILFYVRRDVR 103          
BLAST of mRNA_H-canaliculatus_F_contig14091.3236.1 vs. uniprot
Match: A0A7S0HLM6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HLM6_9CRYP)

HSP 1 Score: 53.1 bits (126), Expect = 2.900e-7
Identity = 26/67 (38.81%), Postives = 39/67 (58.21%), Query Frame = 1
Query:    7 LYDLDGVIQHEGKSITSGHFSTFVRMDTT----KWRHFNDAKVSEVDGAKAVNENAVLLMYTRRPPR 195
            +YDL GV+ HEG S+  GH+ ++V+         W   +D+  S+VD   A+ +NA +L Y RR PR
Sbjct:   42 IYDLYGVLVHEGSSLQFGHYFSYVKHACKHKEGSWYRMDDSYKSKVDLETALKQNAYILFYARRYPR 108          
BLAST of mRNA_H-canaliculatus_F_contig14091.3236.1 vs. uniprot
Match: A0A7S1ZUK2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZUK2_TRICV)

HSP 1 Score: 54.3 bits (129), Expect = 6.400e-7
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    1 QVLYDLDGVIQHEGKSITSGHFSTFVRMDTT-KWRHFNDAKVSEVDGAKAVNENAVLLMYTRR 186
            Q LYDL GV+ H+G +++ GH+   ++ +   KWR FNDA++ EV     V+ +A +L Y RR
Sbjct:  418 QPLYDLYGVVHHQG-ALSGGHYVASLKSELDGKWRLFNDAQIFEVSAQDVVDSSAYILFYIRR 479          
BLAST of mRNA_H-canaliculatus_F_contig14091.3236.1 vs. uniprot
Match: A0A319DJG1_9EURO (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aspergillus ellipticus CBS 707.79 TaxID=1448320 RepID=A0A319DJG1_9EURO)

HSP 1 Score: 54.3 bits (129), Expect = 6.430e-7
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    7 LYDLDGVIQHEGKSITSGHFSTFVRMDTT--------KWRHFNDAKVSEVDGAK-------AVNENAVLLMY 177
            LY+L GVI H+G S  SGH++++V+   T        KW  FND KV+EVDG K         + +A++L+Y
Sbjct:  491 LYELRGVITHQGASADSGHYTSYVKKQATNDNDNSEGKWWWFNDDKVTEVDGDKIETLAGGGESHSALILLY 562          
BLAST of mRNA_H-canaliculatus_F_contig14091.3236.1 vs. uniprot
Match: A0A376B1Q2_9ASCO (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Saccharomycodes ludwigii TaxID=36035 RepID=A0A376B1Q2_9ASCO)

HSP 1 Score: 53.9 bits (128), Expect = 8.760e-7
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    7 LYDLDGVIQHEGKSITSGHFSTFVR--MDTTKWRHFNDAKVSEVDGAK-------AVNENAVLLMY 177
            LYDL GVI H+G +  SGH+ +F+R   DT KW  FND KVS V   K         +++A++L+Y
Sbjct:  453 LYDLIGVITHQGANSESGHYQSFIRDVNDTEKWYKFNDDKVSVVSKEKIESLAGGGESDSALILIY 518          
BLAST of mRNA_H-canaliculatus_F_contig14091.3236.1 vs. uniprot
Match: A0A7S3P494_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P494_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 8.990e-7
Identity = 25/61 (40.98%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    7 LYDLDGVIQHEGKSITSGHFSTFVRMDTT-KWRHFNDAKVSEVDGAKAVNENAVLLMYTRR 186
            LYDL GVI H+G +++ GH+   ++ +T  +WR FNDA++ E+     V+ +A +L Y RR
Sbjct: 1660 LYDLYGVIHHQG-ALSGGHYVASIKSETDGQWRLFNDAQIYEIHARDVVDASAYILFYIRR 1719          
BLAST of mRNA_H-canaliculatus_F_contig14091.3236.1 vs. uniprot
Match: A0A1G4IQZ7_9SACH (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lachancea mirantina TaxID=1230905 RepID=A0A1G4IQZ7_9SACH)

HSP 1 Score: 53.5 bits (127), Expect = 1.200e-6
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    7 LYDLDGVIQHEGKSITSGHFSTFVR--MDTTKWRHFNDAKVSEVDGAK-------AVNENAVLLMY 177
            +YDL GV+ H+G +  SGH+ +F+R   D  KW  FND K+SEV+  K         +++A++L+Y
Sbjct:  417 VYDLIGVVTHQGANSESGHYQSFIRDENDENKWYKFNDDKISEVEKEKIESLAGGGESDSALILIY 482          
BLAST of mRNA_H-canaliculatus_F_contig14091.3236.1 vs. uniprot
Match: A0A099NXA2_PICKU (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pichia kudriavzevii TaxID=4909 RepID=A0A099NXA2_PICKU)

HSP 1 Score: 53.1 bits (126), Expect = 1.630e-6
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    7 LYDLDGVIQHEGKSITSGHFSTFVR----MDTTKWRHFNDAKVSEVDGAKAVN-------ENAVLLMY 177
            LYDL G+I H+G S  SGH+  FVR    +   KW  FND KV+ +D  K ++       ++A++L+Y
Sbjct:  407 LYDLQGIIAHQGASADSGHYQAFVRDPNDVSGEKWYKFNDDKVTVIDREKIMSLAGGSEGDSALILIY 474          
BLAST of mRNA_H-canaliculatus_F_contig14091.3236.1 vs. uniprot
Match: G8ZT80_TORDC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) TaxID=1076872 RepID=G8ZT80_TORDC)

HSP 1 Score: 53.1 bits (126), Expect = 1.640e-6
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    7 LYDLDGVIQHEGKSITSGHFSTFVR--MDTTKWRHFNDAKVSEVDGAK-------AVNENAVLLMY 177
            LY+L GVI H+G +  SGH+ +F+R  MD  KW +FND KVS V   K         +++A++L+Y
Sbjct:  424 LYELIGVITHQGANSESGHYQSFIRDDMDEDKWYNFNDDKVSVVPKEKIEGLAGGGESDSALILIY 489          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14091.3236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A250X3I7_9CHLO3.900e-841.27USP domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A7S2U9T2_9STRA4.800e-842.19Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0HLM6_9CRYP2.900e-738.81Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S1ZUK2_TRICV6.400e-741.27Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A319DJG1_9EURO6.430e-740.28Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aspe... [more]
A0A376B1Q2_9ASCO8.760e-743.94Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Sacc... [more]
A0A7S3P494_9STRA8.990e-740.98Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1G4IQZ7_9SACH1.200e-639.39Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lach... [more]
A0A099NXA2_PICKU1.630e-639.71Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pich... [more]
G8ZT80_TORDC1.640e-642.42Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Toru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14091contigH-canaliculatus_F_contig14091:2359..2556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1.9e-08
Seed eggNOG ortholog2880.D8LK32
KEGG koko:K11855
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1865@1,KOG1865@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.3750784-CDS-H-canaliculatus_F_contig14091:2358..25561622929160.3750784-CDS-H-canaliculatus_F_contig14091:2358..2556Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14091 2359..2556 -
1696845699.900532-CDS-H-canaliculatus_F_contig14091:2358..25561696845699.900532-CDS-H-canaliculatus_F_contig14091:2358..2556Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14091 2359..2556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14091.3236.1prot_H-canaliculatus_F_contig14091.3236.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14091 2359..2556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14091.3236.1

>prot_H-canaliculatus_F_contig14091.3236.1 ID=prot_H-canaliculatus_F_contig14091.3236.1|Name=mRNA_H-canaliculatus_F_contig14091.3236.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=66bp
QVLYDLDGVIQHEGKSITSGHFSTFVRMDTTKWRHFNDAKVSEVDGAKAV
NENAVLLMYTRRPPR*
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mRNA from alignment at H-canaliculatus_F_contig14091:2359..2556-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14091.3236.1 ID=mRNA_H-canaliculatus_F_contig14091.3236.1|Name=mRNA_H-canaliculatus_F_contig14091.3236.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=198bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14091:2359..2556- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTCCTCTACGACCTCGACGGGGTGATCCAACATGAGGGGAAAAGCAT AACCAGCGGTCACTTTTCGACCTTCGTCCGAATGGACACCACCAAATGGC GCCATTTCAACGACGCCAAGGTGTCGGAGGTGGATGGGGCAAAGGCTGTC AACGAGAACGCCGTCCTTCTCATGTACACCCGACGTCCGCCGCGCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14091:2359..2556-

>mRNA_H-canaliculatus_F_contig14091.3236.1 ID=mRNA_H-canaliculatus_F_contig14091.3236.1|Name=mRNA_H-canaliculatus_F_contig14091.3236.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=396bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14091:2359..2556- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTCCTCTACGACCTCGACGGGGTGATCCAACATGAGGGGAAAAGCAT
AACCAGCGGTCACTTTTCGACCTTCGTCCGAATGGACACCACCAAATGGC
GCCATTTCAACGACGCCAAGGTGTCGGAGGTGGATGGGGCAAAGGCTGTC
AACGAGAACGCCGTCCTTCTCATGTACACCCGACGTCCGCCGCGCTAGCA
GGTCCTCTACGACCTCGACGGGGTGATCCAACATGAGGGGAAAAGCATAA
CCAGCGGTCACTTTTCGACCTTCGTCCGAATGGACACCACCAAATGGCGC
CATTTCAACGACGCCAAGGTGTCGGAGGTGGATGGGGCAAAGGCTGTCAA
CGAGAACGCCGTCCTTCTCATGTACACCCGACGTCCGCCGCGCTAG
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