mRNA_H-canaliculatus_F_contig14087.3230.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig14087.3230.1 vs. uniprot
Match: D8LI40_ECTSI (A to I editase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI40_ECTSI) HSP 1 Score: 259 bits (662), Expect = 6.030e-77 Identity = 169/304 (55.59%), Postives = 193/304 (63.49%), Query Frame = 1
Query: 169 QEQQLGALRIKSSRSNISEEGRTMSMSCSDKLARWAFLGVQQGGLLAPWVEPIFLSSIVVSADPRSDGPGPLSSSLSRAIPGRAALAL------ATTNHVPPSSSGRPPPGDAQPAAAGAGSPSTSPLP--EAKEAMRVFVTEVTFDKSKAQSEQRACEEGVSCSAASGAGA------ADPRLSTAPXXXXXXXXXXVGGEKYSKICGDHNNHXXXXXXXXXXXXXXXXXXXXXXXXXXPRRDRKLKRAVPSGTSLNWIEGLGTGRGAGPGGGDATRVQAEVTLSATGRMQGAVSKGVLTLRTR 1038
+EQQ+GALRIKSSRSNISEEGRTMSMSCSDKLA+WAFLGVQ GGLLA WVEPIFLSSIV+SADPR+DGP PL+S+L+RAIPGRAALA TT V G S P+P E +E M VFV+EVTF +SKAQSEQR ++ SCS+ SG G+ A +S+ G ++ GD++ RRDRK K+ VPSGTSLNWIEGLGTGRG GPGGGD R+QAEVTLSATGRMQGAVSKGVLTLRTR
Sbjct: 319 EEQQVGALRIKSSRSNISEEGRTMSMSCSDKLAKWAFLGVQ-GGLLASWVEPIFLSSIVISADPRTDGPAPLASALTRAIPGRAALANRRSSFDGTTGTV-----------------GGEEHLSHPPMPREEEEERMAVFVSEVTFARSKAQSEQRVFDDEGSCSSTSGVGSPGSITPAKATVSSVKASPSIADASIAAGSARQRMPGDNDRSGRETSQGTRSDNSIIGKRS--------RRDRKPKKVVPSGTSLNWIEGLGTGRGTGPGGGDTARIQAEVTLSATGRMQGAVSKGVLTLRTR 596
BLAST of mRNA_H-canaliculatus_F_contig14087.3230.1 vs. uniprot
Match: A0A835ZEK1_9STRA (A to I editase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK1_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 2.440e-15 Identity = 57/114 (50.00%), Postives = 72/114 (63.16%), Query Frame = 1
Query: 112 GGQGGATA----------AGELVLRIDREQEQQLGALRIKSSRSNISEEGRTMSMSCSDKLARWAFLGVQQGGLLAPWVEPIFLSSIVVSADPRSDGPGPLSSSLSRAIPGRAA 423
GGQGG+ A G L ++RE Q +G LR+KS RS++ E RT SMSCSDKLARWA LG+Q G LL W+EP+ LSS+ VSAD R+ P +++ RAI RAA
Sbjct: 255 GGQGGSGAHAAGAVAMAYTGAKALTLEREVRQAVGQLRLKSGRSDLRPEDRTESMSCSDKLARWAVLGLQ-GRLLRRWLEPVLLSSVTVSADARA-APDAQRAAMRRAICDRAA 366
BLAST of mRNA_H-canaliculatus_F_contig14087.3230.1 vs. uniprot
Match: A0A5D6Y1B1_9STRA (A to I editase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1B1_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 7.960e-12 Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 1
Query: 139 GELVLRIDREQEQQLGALRIKSSRSNISEEGRTMSMSCSDKLARWAFLGVQQGGLLAPWVEPIFLSSIVVSADPRSDGPGPLSSSLSRAIPGRAALALATTNH 447
G + R + EQ +G R+KS RS++ + +T+SMSCSDKLARWA LGVQ G LL + +P+FL+S+VV D S ++L RA+ GR A AL H
Sbjct: 223 GAVEPRKETRFEQAVGVARVKSGRSDLLPDKQTLSMSCSDKLARWAALGVQ-GSLLLQFYDPLFLASVVVLRDDASVSAAAQQAALERAVVGRLAHALWPQTH 324
BLAST of mRNA_H-canaliculatus_F_contig14087.3230.1 vs. uniprot
Match: A0A329S331_9STRA (A to I editase domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S331_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.270e-11 Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 157 IDREQEQQLGALRIKSSRSNISEEGRTMSMSCSDKLARWAFLGVQQGGLLAPWVEPIFLSSIVVSADPRSDGPGPLSSSLSRAI 408
+D++ Q +G R+KS RS++ E +T+SMSCSDKLARW LG+Q G LL W EPIFLSSI+VS D ++ +L RA+
Sbjct: 202 LDKKFAQAVGIARVKSGRSDLPPEKQTLSMSCSDKLARWNALGLQ-GSLLLQWFEPIFLSSIIVSEDAKAMSVTKQEQALQRAV 284
BLAST of mRNA_H-canaliculatus_F_contig14087.3230.1 vs. uniprot
Match: K0R2A8_THAOC (A to I editase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2A8_THAOC) HSP 1 Score: 76.3 bits (186), Expect = 1.330e-11 Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 1
Query: 37 FTGAKIIAAVKERGASDKSFRGREGGGQGGATAAGELVLRIDREQEQQLGALRIKSSRSNISEEGRTMSMSCSDKLARWAFLGVQQGGLLAPW-VEPIFLSSIVVSADPRSDGPGPL 384
FTGAKII + E + +E GE+ +R+ REQ Q + LR+KSSRSNI + R+MS+ C+DK+ RW+ G+Q G LL+ + +EPI L+SI VS DPRS G L
Sbjct: 196 FTGAKIILSGGEEHQTTNITSLQE-------EPEGEVKVRLGREQVQIVKKLRVKSSRSNIPNKMRSMSLCCADKIVRWSVFGLQ-GALLSKFLIEPITLTSICVSRDPRSVDGGQL 304
BLAST of mRNA_H-canaliculatus_F_contig14087.3230.1 vs. uniprot
Match: A0A8J5MBZ2_9STRA (A to I editase domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MBZ2_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.690e-11 Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 157 IDREQEQQLGALRIKSSRSNISEEGRTMSMSCSDKLARWAFLGVQQGGLLAPWVEPIFLSSIVVSADPRSDGPGPLSSSLSRAI 408
+D++ Q +G R+KS RS++ E +T+SMSCSDKLARW LG+Q G LL W EPIFLSSI+VS D ++ +L RA+
Sbjct: 442 LDKKFAQAVGIARVKSGRSDLPPEKQTLSMSCSDKLARWNALGLQ-GSLLLQWFEPIFLSSIIVSEDAKAMSVTKQEQALQRAV 524
BLAST of mRNA_H-canaliculatus_F_contig14087.3230.1 vs. uniprot
Match: A0A662WKZ4_9STRA (A to I editase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKZ4_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 3.130e-11 Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 124 GATAAGELVLRIDREQEQQLGALRIKSSRSNISEEGRTMSMSCSDKLARWAFLGVQQGGLLAPWVEPIFLSSIVVSADPRS 366
G+ +AGE ++ EQ +G R+KS RS++ E +T+SMSCSDKLA+W LG+Q G LL W EPIFL SIVV D ++
Sbjct: 473 GSESAGEQEEPPEKRFEQTMGLARVKSGRSDLPVEKQTLSMSCSDKLAKWNALGLQ-GSLLLQWFEPIFLRSIVVGTDEKA 552
BLAST of mRNA_H-canaliculatus_F_contig14087.3230.1 vs. uniprot
Match: A0A662XZG5_9STRA (A to I editase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZG5_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 5.810e-11 Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 133 AAGELVLRIDREQEQQLGALRIKSSRSNISEEGRTMSMSCSDKLARWAFLGVQQGGLLAPWVEPIFLSSIVVSADPRS 366
+AGE ++ EQ LG R+KS RS++ E +T+SMSCSDKLA+W LG+Q G LL W EPIFL SIVV D ++
Sbjct: 211 SAGEQEEPPEKRFEQTLGLARVKSGRSDLPVEKQTLSMSCSDKLAKWNALGLQ-GSLLLQWFEPIFLRSIVVGTDEKA 287
BLAST of mRNA_H-canaliculatus_F_contig14087.3230.1 vs. uniprot
Match: A0A833X2Q8_PHYIN (Adenosine-deaminase (Editase) domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833X2Q8_PHYIN) HSP 1 Score: 73.6 bits (179), Expect = 8.890e-11 Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1
Query: 151 LRIDREQEQQLGALRIKSSRSNISEEGRTMSMSCSDKLARWAFLGVQQGGLLAPWVEPIFLSSIVVSAD 357
L+ D++ Q +G R+KS RS++ E +T+SMSCSDKLA+W LG+Q G LL W EPIFLSSI+VS D
Sbjct: 194 LQPDKKFAQAVGIARVKSGRSDLPLEKQTLSMSCSDKLAKWNALGLQ-GSLLLQWFEPIFLSSIIVSKD 261
BLAST of mRNA_H-canaliculatus_F_contig14087.3230.1 vs. uniprot
Match: A0A2P4XLQ8_9STRA (tRNA-specific adenosine deaminase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XLQ8_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.200e-10 Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 160 DREQEQQLGALRIKSSRSNISEEGRTMSMSCSDKLARWAFLGVQQGGLLAPWVEPIFLSSIVVSAD 357
D++ Q +G R+KS RS++ E +T+SMSCSDKLA+W LG+Q G LL W EPIFLSSIVVS D
Sbjct: 211 DKKFAQAVGIARMKSGRSDLPLEKQTLSMSCSDKLAKWNALGLQ-GSLLLQWFEPIFLSSIVVSGD 275 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14087.3230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig14087.3230.1 >prot_H-canaliculatus_F_contig14087.3230.1 ID=prot_H-canaliculatus_F_contig14087.3230.1|Name=mRNA_H-canaliculatus_F_contig14087.3230.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=336bp MAFTGAKIIAAVKERGASDKSFRGREGGGQGGATAAGELVLRIDREQEQQback to top mRNA from alignment at H-canaliculatus_F_contig14087:80..2756- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig14087.3230.1 ID=mRNA_H-canaliculatus_F_contig14087.3230.1|Name=mRNA_H-canaliculatus_F_contig14087.3230.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2677bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14087:80..2756- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14087:80..2756- >mRNA_H-canaliculatus_F_contig14087.3230.1 ID=mRNA_H-canaliculatus_F_contig14087.3230.1|Name=mRNA_H-canaliculatus_F_contig14087.3230.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2016bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14087:80..2756- (Hapterophycus canaliculatus Oshoro5f female)back to top |