mRNA_H-canaliculatus_F_contig14078.3222.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14078.3222.1
Unique NamemRNA_H-canaliculatus_F_contig14078.3222.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14078.3222.1 vs. uniprot
Match: A0A6H5JD62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD62_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.320e-21
Identity = 60/81 (74.07%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 GDADEIRRCLLAGLNKVDEVDDLGCTAVHLAGAMGHTNVVRLLVEEHGAAVDARDGALXXXXXXXXEGGYPIMVELLLRLG 243
            GD +E+RRCLLAG NKVDEVD+LGCT VHLAGAMGHTNVV+LLVEEH AAVDARD   XXXXXXXX          LLRLG
Sbjct:   90 GDVEEVRRCLLAGFNKVDEVDELGCTPVHLAGAMGHTNVVKLLVEEHRAAVDARDXXXXXXXXXXXXXXXXXXXXXLLRLG 170
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BLAST of mRNA_H-canaliculatus_F_contig14078.3222.1 vs. uniprot
Match: D8LLZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ4_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 8.590e-11
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:  100 MGHTNVVRLLVEEHGAAVDARDGALXXXXXXXXEGGYPIMVELLLRLG 243
            MGHTNVV+LLVEEH AAVDARDGAL        EGG+P++VELLLRLG
Sbjct:    1 MGHTNVVKLLVEEHRAAVDARDGALCTPLHAASEGGHPVVVELLLRLG 48
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14078.3222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JD62_9PHAE3.320e-2174.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLZ4_ECTSI8.590e-1172.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14078contigH-canaliculatus_F_contig14078:179..2527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue5.8e-10
Seed eggNOG ortholog2880.D8LLZ4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-14_002230.1
Exons4
Model size576
Cds size576
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14078.3222.1prot_H-canaliculatus_F_contig14078.3222.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14078 179..2527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929158.2198722-CDS-H-canaliculatus_F_contig14078:178..2801622929158.2198722-CDS-H-canaliculatus_F_contig14078:178..280Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14078 179..280 +
1696845698.873285-CDS-H-canaliculatus_F_contig14078:178..2801696845698.873285-CDS-H-canaliculatus_F_contig14078:178..280Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14078 179..280 +
1622929158.233781-CDS-H-canaliculatus_F_contig14078:1012..12091622929158.233781-CDS-H-canaliculatus_F_contig14078:1012..1209Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14078 1013..1209 +
1696845698.8861668-CDS-H-canaliculatus_F_contig14078:1012..12091696845698.8861668-CDS-H-canaliculatus_F_contig14078:1012..1209Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14078 1013..1209 +
1622929158.2468781-CDS-H-canaliculatus_F_contig14078:1607..17611622929158.2468781-CDS-H-canaliculatus_F_contig14078:1607..1761Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14078 1608..1761 +
1696845698.8955157-CDS-H-canaliculatus_F_contig14078:1607..17611696845698.8955157-CDS-H-canaliculatus_F_contig14078:1607..1761Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14078 1608..1761 +
1622929158.2622085-CDS-H-canaliculatus_F_contig14078:2404..25271622929158.2622085-CDS-H-canaliculatus_F_contig14078:2404..2527Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14078 2405..2527 +
1696845698.9042258-CDS-H-canaliculatus_F_contig14078:2404..25271696845698.9042258-CDS-H-canaliculatus_F_contig14078:2404..2527Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14078 2405..2527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14078.3222.1

>prot_H-canaliculatus_F_contig14078.3222.1 ID=prot_H-canaliculatus_F_contig14078.3222.1|Name=mRNA_H-canaliculatus_F_contig14078.3222.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=192bp
GDADEIRRCLLAGLNKVDEVDDLGCTAVHLAGAMGHTNVVRLLVEEHGAA
VDARDGALCTALHAASEGGYPIMVELLLRLGAEIDARNGKQQTPLHYACG
YGQVEAVHQLVIRGASAGARDANGNTPLHLAGGEGGAEVVRLLLANGAPV
DAPNHRGRRPLHLACRNGRLEAAVTLLDHGADPSGRDGNGMQ
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mRNA from alignment at H-canaliculatus_F_contig14078:179..2527+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14078.3222.1 ID=mRNA_H-canaliculatus_F_contig14078.3222.1|Name=mRNA_H-canaliculatus_F_contig14078.3222.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2349bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14078:179..2527+ (Hapterophycus canaliculatus Oshoro5f female)
GGAGATGCGGATGAGATCCGTAGGTGCCTGCTGGCCGGGCTCAACAAAGT
CGACGAGGTGGACGACCTGGGCTGCACGGCCGTGCACTTAGCGGGGGCAA
TGGTAAGAAGAGGGTAGGCGGGTGTGGATAGATAGGTATAGGTAGGTAGA
CAAAGAGAAAAAAGAGAGACGGAGGACAGAGGGCAGTGACACCAGCAAAG
AGGGAGGAATCGGCGGCGGGAGGCCGAAGACAAAACGCCCGGTGCAAAGG
GAAGAGGGGTAGGATAAGGGGACTGACCCCTATTGGACTGCGTGCTGTAT
CTCCTGTAATGATTGCTACAATTGTCTGGAGCCGGCAAGTCTAGTGGTGT
GGTGTTTGAGTTCTCGTTTCCTTCGGGGTTGAGGGGCACAGACCCAGGAA
ACGTTCCCATCTCTTGCACGCTACTTCTCTCGCTCGTCCGAAAAGCGCGC
TGCGCCATGAGCCAAACGTCCCGGCGAAAGACGCACGCGGGGGGCTCCTC
TGCCTCTCCACTCCCGCTCCCTCCTCACCTACACCGCCGCCGTCACCGCC
GCACGTAACCCCCAGCGGAGGTATTCACTAGCCGTCTCTACTTGGTGTCA
TCCCCACGAGCTGTTCTCTTTGTCTTATCAGTTGGAGCACCGCACCGAAC
GATCCCACCAAATGGCAACAAGAAGAACATCTTCGATGGCCTGCATTAGG
TCGTCGCGCTGAGCACTTCAAATCCATGTTTGTGTTGACCTAAAGCAGTA
GCCTGATTCTAAGCGCTCCCTCATATTTTTCTTCTTCTTTTTTTCTGCCC
CGCGGGCGAACAACGCTCCCAACGGTGGCGGCAGGGCCACACAAACGTGG
TCAGACTGCTGGTGGAAGAGCACGGCGCGGCGGTGGACGCGCGAGACGGG
GCTCTCTGCACCGCCCTGCACGCCGCCAGCGAGGGGGGATATCCCATCAT
GGTGGAGCTGCTGCTGCGACTCGGGGCGGAGATCGACGCCCGGAACGGGA
AGCAGCAGACGCCGCTTCACTACGCTTGCGGGTGAGTTGGGTTGATCGGT
TTCGGGGGCTGCGTCGAGGACGGTGCTGCGGGCGGATGGGTCGGGGGATG
GGCCCGAGCCGGAGCTCCGGCGTTCTCTCCGTCGATGATGATGTGCGGGC
AACTTGCGACCGGCCATTCTTTCTGCCCCGGCGCTTCGCGTAGCTGATGA
CCCCCCCGCCCCTCCGAAAACGTTACGACTTTTTCACCCCTGGCTATGAC
CTCACCTGCTGCCGGCGGCGCGTTCTTCGTCCTTCGCCCCGGTACTCTCC
ACCGCCCCCACCCTCTTGTCGGGCCACACCACTCTGCGTCACCCCCTTCC
CACTCTCCACGGCGGACAACAAAATTTTCGACGTGGTCACGATCGACGGC
TATGGCACCACCAACGGCGGCAACAACAGGTACGGACAGGTGGAGGCAGT
GCATCAGCTGGTCATCCGAGGAGCTTCGGCGGGGGCGCGGGACGCGAACG
GAAACACGCCGCTGCACCTTGCGGGCGGCGAGGGCGGGGCCGAAGTTGTG
AGGCTGCTGCTGGCGAATGGTGCCCCTGTGGACGTGAGTGATGGTGATGG
CGGGGGGCCGAAGGACGACTGTTTTCGTTTTTCGTCTAGATATCAGGGGT
GGGGGGCGGGGGGGGGTTAGCGGGACAGACAGACAGGCAGAGAGATGTGT
GACAAGAGGTTAAGAGACGAAAAGGTATGCCGACGGACAGAAGCGGGTGC
GAGGGTTATAACTACAAATTGTAGCTTCTTGGTTTTCCTCGCTTGGTCAT
CTCTCGTATCTCTATGGTCCCGAGATTGCCTTGGATCGCTTGGCGCAAGA
CCGCCTTGGGTCGCGTGTGAAGCCCACGTCACGTGTGCGATCGCCCTCTT
TTTCCTAGGCGTGGGCGCGTGCGTGTTTGCGTTTTTTTAAGGATCGGCCG
CTCCAGCTGCTGGGCGCCGGGCGAGCGAGTAAGCCTCAGCGAGACTAAGC
CAACGACCAAAGACAGGTTCAAGATAGCGGAGTCCCTCCACAGGGCGGGG
TGCGCCGACGATGCTGGATTTGCTTCTGTCCTTGGGTGTTTTCGGCCCGT
GCCGAGTTCTGGTCGGCCCGAAAATCGATTAAAAAACAACCGACTCGCAA
CTTGGCAAATCTTAGGACAGAAGAACCACCCGAAACTGAGATCGAATCGC
CTCCTGCATGTTCTCATCTCCCGCAGGCGCCCAATCACCGAGGCCGGCGG
CCTTTGCACCTGGCATGTCGCAACGGGCGCCTGGAGGCGGCGGTTACTCT
GCTCGATCACGGCGCCGACCCGTCGGGGAGAGACGGTAACGGGATGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14078:179..2527+

>mRNA_H-canaliculatus_F_contig14078.3222.1 ID=mRNA_H-canaliculatus_F_contig14078.3222.1|Name=mRNA_H-canaliculatus_F_contig14078.3222.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1152bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14078:179..2527+ (Hapterophycus canaliculatus Oshoro5f female)
GGAGATGCGGATGAGATCCGTAGGTGCCTGCTGGCCGGGCTCAACAAAGT
CGACGAGGTGGACGACCTGGGCTGCACGGCCGTGCACTTAGCGGGGGCAA
TGGGAGATGCGGATGAGATCCGTAGGTGCCTGCTGGCCGGGCTCAACAAA
GTCGACGAGGTGGACGACCTGGGCTGCACGGCCGTGCACTTAGCGGGGGC
AATGGGCCACACAAACGTGGTCAGACTGCTGGTGGAAGAGCACGGCGCGG
CGGTGGACGCGCGAGACGGGGCTCTCTGCACCGCCCTGCACGCCGCCAGC
GAGGGGGGATATCCCATCATGGTGGAGCTGCTGCTGCGACTCGGGGCGGA
GATCGACGCCCGGAACGGGAAGCAGCAGACGCCGCTTCACTACGCTTGCG
GGGCCACACAAACGTGGTCAGACTGCTGGTGGAAGAGCACGGCGCGGCGG
TGGACGCGCGAGACGGGGCTCTCTGCACCGCCCTGCACGCCGCCAGCGAG
GGGGGATATCCCATCATGGTGGAGCTGCTGCTGCGACTCGGGGCGGAGAT
CGACGCCCGGAACGGGAAGCAGCAGACGCCGCTTCACTACGCTTGCGGGT
ACGGACAGGTGGAGGCAGTGCATCAGCTGGTCATCCGAGGAGCTTCGGCG
GGGGCGCGGGACGCGAACGGAAACACGCCGCTGCACCTTGCGGGCGGCGA
GGGCGGGGCCGAAGTTGTGAGGCTGCTGCTGGCGAATGGTGCCCCTGTGG
ACGTACGGACAGGTGGAGGCAGTGCATCAGCTGGTCATCCGAGGAGCTTC
GGCGGGGGCGCGGGACGCGAACGGAAACACGCCGCTGCACCTTGCGGGCG
GCGAGGGCGGGGCCGAAGTTGTGAGGCTGCTGCTGGCGAATGGTGCCCCT
GTGGACGCGCCCAATCACCGAGGCCGGCGGCCTTTGCACCTGGCATGTCG
CAACGGGCGCCTGGAGGCGGCGGTTACTCTGCTCGATCACGGCGCCGACC
CGTCGGGGAGAGACGGTAACGGGATGCAGGCGCCCAATCACCGAGGCCGG
CGGCCTTTGCACCTGGCATGTCGCAACGGGCGCCTGGAGGCGGCGGTTAC
TCTGCTCGATCACGGCGCCGACCCGTCGGGGAGAGACGGTAACGGGATGC
AG
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