mRNA_H-canaliculatus_F_contig14072.3221.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14072.3221.1
Unique NamemRNA_H-canaliculatus_F_contig14072.3221.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14072.3221.1 vs. uniprot
Match: D8LI16_ECTSI (NAGPA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI16_ECTSI)

HSP 1 Score: 386 bits (992), Expect = 2.540e-122
Identity = 208/305 (68.20%), Postives = 232/305 (76.07%), Query Frame = 1 
Query:    1 QDQVHDPVLYFDGESAPAEETEEGAENAFLRTVAITMNCSTPNATLRYTVDGFSVPGDASPSVSPGTVVQWSEEGATEFRVVAVADGLYQSELTKWPVSILAPRTDEFPVATGYGEEQEGTSXXXXXXXXXXXXXXXXXVEVTAFEAVYAAPAAELEQEEMLGPGYGGECEGGARVVRGKLLRLANPSRHFSFAPPPGACDGDGGE-VLSPAADTIRAFQTTRQTAPLLDGETLAEARIRLDLDAREAAWRAAGGGSGCQAATAAGLLPAAVAAAAADGDAGYGESCAVGHLVGAGQVYNAEEGT 912
            Q+QV DP L+F GESA A+ T+E  ENAFLRTVAITMNCSTPN T+RYT DG SVPGD SPSV PGTVVQWSEEG  EFRVVAVADGLYQSELT WPV+I+APRTDE+PVA   G+                         VTAFEAVYAAPAAELEQ+E+LGPGYG +CEGGARVVRGKLLR+ NPS HFSFAPPPGAC GDG E  LSPA+ T R F+  R+TAPLLDGE+  +AR+RLDLD+REAAWRAAGGG+GCQAA A G+LP           +G G SCAVGHLVGAGQV+ AEEGT
Sbjct:  365 QEQVEDPALFFAGESATADVTDE--ENAFLRTVAITMNCSTPNTTVRYTTDGVSVPGDTSPSVEPGTVVQWSEEGTWEFRVVAVADGLYQSELTMWPVTIVAPRTDEYPVAGSSGD-------------------------VTAFEAVYAAPAAELEQQEVLGPGYGDQCEGGARVVRGKLLRVFNPSGHFSFAPPPGACGGDGEEHALSPASQTSRGFEAVRRTAPLLDGESPEDARVRLDLDSREAAWRAAGGGNGCQAAAAGGMLPPL---------SGDGGSCAVGHLVGAGQVFQAEEGT 633
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BLAST of mRNA_H-canaliculatus_F_contig14072.3221.1 vs. uniprot
Match: A0A6H5KNM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM8_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 4.320e-51
Identity = 94/119 (78.99%), Postives = 101/119 (84.87%), Query Frame = 1 
Query:    1 QDQVHDPVLYFDGESAPAEETEEGAENAFLRTVAITMNCSTPNATLRYTVDGFSVPGDASPSVSPGTVVQWSEEGATEFRVVAVADGLYQSELTKWPVSILAPRTDEFPVATGYGEEQE 357
            QDQV DP L+F GESA A+ T+E  ENAFLRTVAITMNCSTPNAT+RYT DG SVPGD SPSV PGTVVQWSEEG  EFRVVAVADGLYQSELTKWPV+I+APRTDE+PVA   G E E
Sbjct:  382 QDQVEDPALFFAGESATADVTQE--ENAFLRTVAITMNCSTPNATVRYTTDGVSVPGDTSPSVEPGTVVQWSEEGTWEFRVVAVADGLYQSELTKWPVTIVAPRTDEYPVAGSSGGETE 498
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14072.3221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI16_ECTSI2.540e-12268.20NAGPA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KNM8_9PHAE4.320e-5178.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14072contigH-canaliculatus_F_contig14072:130..2178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score388.7
Seed ortholog evalue2.6e-105
Seed eggNOG ortholog2880.D8LI16
Preferred nameNAGPA
KEGG koko:K01125
KEGG Pathwayko04142,map04142
GOsGO:0002790,GO:0003674,GO:0003824,GO:0003944,GO:0004553,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0005975,GO:0006464,GO:0006605,GO:0006622,GO:0006623,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0008104,GO:0008150,GO:0008152,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0015929,GO:0016020,GO:0016021,GO:0016043,GO:0016787,GO:0016798,GO:0019538,GO:0031224,GO:0031226,GO:0032940,GO:0033036,GO:0033299,GO:0033365,GO:0034613,GO:0036211,GO:0042886,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061462,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:1901564
EggNOG free text desc.N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
EggNOG OGs28JJ0@1,2QRY5@2759
EC3.1.4.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF2233
Ec32 orthologEc-04_002860.1
Exons3
Model size930
Cds size930
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14072.3221.1prot_H-canaliculatus_F_contig14072.3221.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14072 130..2178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929158.1130676-CDS-H-canaliculatus_F_contig14072:129..4841622929158.1130676-CDS-H-canaliculatus_F_contig14072:129..484Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14072 130..484 +
1696845698.8420386-CDS-H-canaliculatus_F_contig14072:129..4841696845698.8420386-CDS-H-canaliculatus_F_contig14072:129..484Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14072 130..484 +
1622929158.1488857-CDS-H-canaliculatus_F_contig14072:1226..14901622929158.1488857-CDS-H-canaliculatus_F_contig14072:1226..1490Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14072 1227..1490 +
1696845698.855958-CDS-H-canaliculatus_F_contig14072:1226..14901696845698.855958-CDS-H-canaliculatus_F_contig14072:1226..1490Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14072 1227..1490 +
1622929158.164236-CDS-H-canaliculatus_F_contig14072:1867..21781622929158.164236-CDS-H-canaliculatus_F_contig14072:1867..2178Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14072 1868..2178 +
1696845698.8643506-CDS-H-canaliculatus_F_contig14072:1867..21781696845698.8643506-CDS-H-canaliculatus_F_contig14072:1867..2178Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14072 1868..2178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14072.3221.1

>prot_H-canaliculatus_F_contig14072.3221.1 ID=prot_H-canaliculatus_F_contig14072.3221.1|Name=mRNA_H-canaliculatus_F_contig14072.3221.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=310bp
QDQVHDPVLYFDGESAPAEETEEGAENAFLRTVAITMNCSTPNATLRYTV
DGFSVPGDASPSVSPGTVVQWSEEGATEFRVVAVADGLYQSELTKWPVSI
LAPRTDEFPVATGYGEEQEGTSGTSSGGDSGDSGDMLAMVEVTAFEAVYA
APAAELEQEEMLGPGYGGECEGGARVVRGKLLRLANPSRHFSFAPPPGAC
DGDGGEVLSPAADTIRAFQTTRQTAPLLDGETLAEARIRLDLDAREAAWR
AAGGGSGCQAATAAGLLPAAVAAAAADGDAGYGESCAVGHLVGAGQVYNA
EEGTGEQAK*
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mRNA from alignment at H-canaliculatus_F_contig14072:130..2178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14072.3221.1 ID=mRNA_H-canaliculatus_F_contig14072.3221.1|Name=mRNA_H-canaliculatus_F_contig14072.3221.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2049bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14072:130..2178+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGACCAAGTCCACGACCCCGTGTTGTACTTCGACGGCGAGTCTGCTCC
CGCCGAGGAGACCGAGGAAGGCGCAGAGAACGCCTTCCTGAGGACGGTCG
CCATCACCATGAACTGCTCCACGCCGAACGCCACCCTGCGCTACACCGTG
GACGGCTTTTCCGTGCCCGGGGACGCGTCTCCGTCGGTGTCCCCGGGCAC
CGTCGTGCAGTGGTCGGAGGAGGGCGCGACCGAGTTCAGGGTGGTGGCGG
TGGCGGATGGCCTGTACCAGAGCGAGCTGACCAAGTGGCCCGTCAGCATC
TTGGCGCCGAGAACGGACGAGTTCCCTGTCGCGACGGGGTATGGGGAGGA
ACAAGGTGACTTTGGAGATAGGATGAGATGAGAAAGGAAGAGATGAGTCT
GGGATGCGATGGACTGGGCGAGGTACGGTGAGGTCATTGGAAGACGGGGA
AGCAGCAGTGGATGGGACGGGGCGAGAGAGCTGGCTGGCTTTCCAGAAGA
ACTGTCAAAAGGAAGGGTGAATGAGATGACGTGGCTTAGGTTTGAGGTTT
TGGCTGTTGGAAGGTGGCACAAGAGTAAGCGTAAGGGGAAGAGAGGGAAC
GGAAGGCACGGCTGGATTGCGGCCACTATCGAAAGTCTGGTACGGGATCA
GGTGAAGCTGATGCGACCGGCTAGAAGGTGGGATGGGCACGGCTGGGCCG
CTGCTAGCGCCGGAGTGTCCACGTGGTGTAAAACTGGACACACACGAGCG
GTTGAGGGCGATGATCCTGAAGGACATCCTGGTGCGCGCTTCGATCGCTC
GGCCGTGCCACAGGGGGGTCATTCCCGAGCGGCGTCGTGAGTCATAAGCA
GCCGACAGGCAACCATACCGTAGGAATATCTCCTTCAAAGACTACCGCAC
GTCCGCTCGTCCATTCCGCTCCAGGGCCTGCTCCCTCGCTCTCTTGTCGG
CCGTTGTCGGCCGTTGTTGGCCTGAGCTCGCCCGCACAACCCATGCTCGT
CAACACCACGGGCTCATCCAAACCGCGCCCGTTCGAACCCTCACCCCCAC
CACTCCGCCCTCCTCGGCACTCTCTCGGGTAATTTTACCGATGAAAGAAG
GTACGTCGGGAACAAGCAGCGGCGGCGACAGCGGCGACAGCGGCGACATG
CTGGCGATGGTGGAAGTGACGGCCTTCGAAGCCGTCTACGCCGCCCCAGC
CGCCGAGCTGGAGCAGGAGGAGATGCTGGGGCCGGGGTACGGCGGCGAGT
GCGAGGGCGGGGCTCGCGTCGTGAGAGGAAAGCTGCTCCGGTTGGCAAAC
CCGAGCCGCCACTTCTCGTTCGCGCCGCCGCCCGGTGCTTGCGATGGCGA
TGGAGGCGAGGGTGAGAGGTCGAGCTCGGAGATAACAGAGAGGGAAAATA
CGAAGGCAGGCAGATCCGCGGGTAGAGGAAGGCAAGACACATAGAAAGGC
AGAGAGCGAAAGGGGTTGCTTGGTTTTTGGATCGGCGTTTGTTTGTCGAC
GGATGTGGGCCGCGATGGCGCTCCGCGTTTATGTTAAAAGCGAGCCCCAT
GCCGAAGCACGAGCAAGGAGTCGCCGACCGCCAGAGCAAAAACCTCGCGG
GAGCCACACTATCCATCATGCTTTAGCGACCAGCATCTTGTACAGCCTCC
CTGCGTCAAATCGACCGTACGCCCGCGCGCAAGCAGCAAACGCCCCTCTA
CTCCCCGCCCCCCCCTCATGTCTCTTGCCAACACACAGTGCTGTCTCCAG
CGGCCGACACAATCCGAGCCTTCCAGACCACCAGACAGACAGCCCCGCTC
TTGGACGGCGAGACACTGGCGGAGGCGAGGATTCGGCTGGACCTCGACGC
CCGAGAGGCAGCCTGGCGGGCGGCCGGGGGGGGAAGCGGTTGCCAGGCGG
CGACGGCGGCGGGCCTGTTACCGGCGGCGGTGGCGGCGGCGGCGGCAGAC
GGGGATGCCGGCTATGGCGAGAGTTGTGCCGTCGGGCACTTGGTGGGCGC
GGGGCAGGTTTACAACGCCGAGGAAGGGACTGGTGAGCAAGCGAAATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14072:130..2178+

>mRNA_H-canaliculatus_F_contig14072.3221.1 ID=mRNA_H-canaliculatus_F_contig14072.3221.1|Name=mRNA_H-canaliculatus_F_contig14072.3221.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1860bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14072:130..2178+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGACCAAGTCCACGACCCCGTGTTGTACTTCGACGGCGAGTCTGCTCC
CGCCGAGGAGACCGAGGAAGGCGCAGAGAACGCCTTCCTGAGGACGGTCG
CCATCACCATGAACTGCTCCACGCCGAACGCCACCCTGCGCTACACCGTG
GACGGCTTTTCCGTGCCCGGGGACGCGTCTCCGTCGGTGTCCCCGGGCAC
CGTCGTGCAGTGGTCGGAGGAGGGCGCGACCGAGTTCAGGGTGGTGGCGG
TGGCGGATGGCCTGTACCAGAGCGAGCTGACCAAGTGGCCCGTCAGCATC
TTGGCGCCGAGAACGGACGAGTTCCCTGTCGCGACGGGGTATGGGGAGGA
ACAAGCAGGACCAAGTCCACGACCCCGTGTTGTACTTCGACGGCGAGTCT
GCTCCCGCCGAGGAGACCGAGGAAGGCGCAGAGAACGCCTTCCTGAGGAC
GGTCGCCATCACCATGAACTGCTCCACGCCGAACGCCACCCTGCGCTACA
CCGTGGACGGCTTTTCCGTGCCCGGGGACGCGTCTCCGTCGGTGTCCCCG
GGCACCGTCGTGCAGTGGTCGGAGGAGGGCGCGACCGAGTTCAGGGTGGT
GGCGGTGGCGGATGGCCTGTACCAGAGCGAGCTGACCAAGTGGCCCGTCA
GCATCTTGGCGCCGAGAACGGACGAGTTCCCTGTCGCGACGGGGTATGGG
GAGGAACAAGAAGGTACGTCGGGAACAAGCAGCGGCGGCGACAGCGGCGA
CAGCGGCGACATGCTGGCGATGGTGGAAGTGACGGCCTTCGAAGCCGTCT
ACGCCGCCCCAGCCGCCGAGCTGGAGCAGGAGGAGATGCTGGGGCCGGGG
TACGGCGGCGAGTGCGAGGGCGGGGCTCGCGTCGTGAGAGGAAAGCTGCT
CCGGTTGGCAAACCCGAGCCGCCACTTCTCGTTCGCGCCGCCGCCCGGTG
CTTGCGATGGCGATGGAGGCGAGGAAGGTACGTCGGGAACAAGCAGCGGC
GGCGACAGCGGCGACAGCGGCGACATGCTGGCGATGGTGGAAGTGACGGC
CTTCGAAGCCGTCTACGCCGCCCCAGCCGCCGAGCTGGAGCAGGAGGAGA
TGCTGGGGCCGGGGTACGGCGGCGAGTGCGAGGGCGGGGCTCGCGTCGTG
AGAGGAAAGCTGCTCCGGTTGGCAAACCCGAGCCGCCACTTCTCGTTCGC
GCCGCCGCCCGGTGCTTGCGATGGCGATGGAGGCGAGGTGCTGTCTCCAG
CGGCCGACACAATCCGAGCCTTCCAGACCACCAGACAGACAGCCCCGCTC
TTGGACGGCGAGACACTGGCGGAGGCGAGGATTCGGCTGGACCTCGACGC
CCGAGAGGCAGCCTGGCGGGCGGCCGGGGGGGGAAGCGGTTGCCAGGCGG
CGACGGCGGCGGGCCTGTTACCGGCGGCGGTGGCGGCGGCGGCGGCAGAC
GGGGATGCCGGCTATGGCGAGAGTTGTGCCGTCGGGCACTTGGTGGGCGC
GGGGCAGGTTTACAACGCCGAGGAAGGGACTGGTGAGCAAGCGAAATGAT
GCTGTCTCCAGCGGCCGACACAATCCGAGCCTTCCAGACCACCAGACAGA
CAGCCCCGCTCTTGGACGGCGAGACACTGGCGGAGGCGAGGATTCGGCTG
GACCTCGACGCCCGAGAGGCAGCCTGGCGGGCGGCCGGGGGGGGAAGCGG
TTGCCAGGCGGCGACGGCGGCGGGCCTGTTACCGGCGGCGGTGGCGGCGG
CGGCGGCAGACGGGGATGCCGGCTATGGCGAGAGTTGTGCCGTCGGGCAC
TTGGTGGGCGCGGGGCAGGTTTACAACGCCGAGGAAGGGACTGGTGAGCA
AGCGAAATGA
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