mRNA_H-canaliculatus_F_contig1407.3220.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1407.3220.1 vs. uniprot
Match: D7FHH0_ECTSI (DUF6314 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHH0_ECTSI) HSP 1 Score: 298 bits (763), Expect = 8.220e-94 Identity = 160/237 (67.51%), Postives = 180/237 (75.95%), Query Frame = 3
Query: 444 VTADTNPPSGSSSGSGSKGPDALPLDTAAGVYRYLRGRWDLEKTIDYKAGGMAGTWQGVATFSPQQKSFESSNESAAPQEEIDDKDGVHSSSDSADLLLLRYLEQGTFRVNGKGAGFEAGQRLVYDCSGHVVRVHFVDDPKKPDSLRFFHQLDFRTASEPSVDTTATAGAGGGAETSGKASMPGEKKSASPRAEFEHLCVRDMYRGQVEVVGPNEFKTRWHVTGPQKDGRIHSTFKR 1154
+TA T S SSGS +G +L LDT AGVYRYLRGRW LEKTIDYKAGGMAGTW+GVATFSP+Q+ + + E+ D DG D + LL LRY EQGTFRVNG+GAGFEAGQRLVYDCSG VVRVHFVDDPKKPD+LRFFH+LDF+TAS +TTA AG GG A +G A+ PRAEFEHLCVRDMYRG+VEV GPNEFKT WHVTGPQKDGRI++TFKR
Sbjct: 9 ITAGTTTCSRESSGS-VEGSASLGLDTPAGVYRYLRGRWGLEKTIDYKAGGMAGTWRGVATFSPKQQQACDGSNTKEEGEQNHDGDG-QDEMDHSSLLFLRYREQGTFRVNGEGAGFEAGQRLVYDCSGPVVRVHFVDDPKKPDALRFFHELDFQTASP--YETTAGAGTGGEAGGTGVAAAGASFAPPPPRAEFEHLCVRDMYRGKVEVAGPNEFKTSWHVTGPQKDGRINATFKR 241
BLAST of mRNA_H-canaliculatus_F_contig1407.3220.1 vs. uniprot
Match: A0A812H3G7_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812H3G7_9DINO) HSP 1 Score: 88.2 bits (217), Expect = 1.490e-16 Identity = 63/207 (30.43%), Postives = 90/207 (43.48%), Query Frame = 3
Query: 534 VYRYLRGRWDLEKTIDYKAGGMAGTWQGVATFSPQQKSFESSNESAAPQEEIDDKDGVHSSSDSADLLLLRYLEQGTFRVNGKGAGFEAGQRLVYDCSGHVVRVHFVDDPKKPDSLRFFHQLDFRTASEPSVDTTATAGAGGGAETSGKASMPGEKKSASPRAEFEHLCVRDMYRGQVEVVGPNEFKTRWHVTGPQKDGRIHSTFKR 1154
V +L GRW + KT DY+ GG G +G ATF+ ++ +K GV L Y E+G +++G EA + ++ S V V+FVDDP K +L T+ + A GAG S A F HLC+ D+Y GQ+ V + F+ W V GP KDG I +T++R
Sbjct: 15 VRSFLLGRWAVSKTFDYRKGGGRGVLEGSATFT-----------------DVPEKKGV-----------LMYEERGDMQLDGFPRPVEAYRFYCFNTSCWPVEVYFVDDPTKKHLPSLLPELAVHTSFFVPL---AFEGAG----------------SPESLAAFRHLCIDDLYSGQLRVNSADSFEWNWSVQGPNKDGDIKATYRR 174
BLAST of mRNA_H-canaliculatus_F_contig1407.3220.1 vs. uniprot
Match: A0A813LT30_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LT30_POLGL) HSP 1 Score: 84.7 bits (208), Expect = 1.260e-14 Identity = 66/211 (31.28%), Postives = 92/211 (43.60%), Query Frame = 3
Query: 534 VYRYLRGRWDLEKTIDYKAGGMAGTWQGVATFSPQQKSFESSNESAAPQEEIDDKDGVHSSSDSADLLLLRYLEQGTFRVNGKGAGFEAGQRLVYDCSGHVVRVHFVDDPKKPDSLRFFHQLDFRTASEPSVDTTATAGAGGGAETSGKASMP-GE---KKSASPRAEFEHLCVRDMYRGQVEVVGPNEFKTRWHVTGPQKDGRIHSTFKR 1154
V +L GRW + KT DY+ GG GT +G ATF+ PQ D+L+ Y E+G ++ G EA + ++ V V+FVDD K Q PS+ TS +P GE ++S S A F HLC+ D+Y GQ+ V P+ F+ W VTGP KDG I +++R
Sbjct: 70 VRAFLLGRWAMSKTFDYRIGGGRGTMEGFATFTE------------TPQR--------------CDVLM--YEERGAVQLEGLAKPVEAYRLYCFNTGRWPVEVYFVDDDAKT-------QRSVTKKHLPSILPELAC------HTSFFVPLPFGESPSEQSGSSEACFNHLCIEDLYSGQLLVRSPDLFEWNWSVTGPHKDGGIICSYRR 239
BLAST of mRNA_H-canaliculatus_F_contig1407.3220.1 vs. uniprot
Match: A0A813JYV2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JYV2_POLGL) HSP 1 Score: 84.3 bits (207), Expect = 1.730e-14 Identity = 70/230 (30.43%), Postives = 96/230 (41.74%), Query Frame = 3
Query: 489 GSKGPDALPLDTAA-------GVYRYLRGRWDLEKTIDYKAGGMAGTWQGVATFSPQQKSFESSNESAAPQEEIDDKDGVHSSSDSADLLLLRYLEQGTFRVNGKGAGFEAGQRLVYDCSGHVVRVHFVDDPKKPD-SLRFFHQLDFRTASEPSVDTTATAGAGGGAETSGKASMPGEKKSASPRAEFEHLCVRDMYRGQVEVVGPNEFKTRWHVTGPQKDGRIHSTFKR 1154
G KGP + AA V +L GRW + KT DY+ GG GT +G ATF+ PQ D+L+ Y E+G ++ G EA + ++ V V+FVDD K S+ H GG +P E+ S S A F HLC+ D+Y GQ+ V P+ F+ W VTGP KDG I +++R
Sbjct: 49 GLKGPGVEAMAGAAPRLINGEAVRAFLLGRWAMSKTFDYRIGGGRGTMEGFATFTE------------TPQR--------------CDVLM--YEERGAVQLEGLAKPVEAYRLYCFNTGRWPVEVYFVDDDAKTQRSVTKKHLPSILPELACHTSFFVPLPFGG---------VPSEQ-SGSSEACFNHLCIEDLYSGQLLVRSPDLFEWNWSVTGPHKDGGIICSYRR 240
BLAST of mRNA_H-canaliculatus_F_contig1407.3220.1 vs. uniprot
Match: A0A812WUY4_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812WUY4_SYMPI) HSP 1 Score: 75.9 bits (185), Expect = 1.450e-10 Identity = 56/204 (27.45%), Postives = 81/204 (39.71%), Query Frame = 3
Query: 543 YLRGRWDLEKTIDYKAGGMAGTWQGVATFSPQQKSFESSNESAAPQEEIDDKDGVHSSSDSADLLLLRYLEQGTFRVNGKGAGFEAGQRLVYDCSGHVVRVHFVDDPKKPDSLRFFHQLDFRTASEPSVDTTATAGAGGGAETSGKASMPGEKKSASPRAEFEHLCVRDMYRGQVEVVGPNEFKTRWHVTGPQKDGRIHSTFKR 1154
+L GRW + K+ DY+ GG G +G AT + +L Y E+G ++ G EA + ++ V V+FVDDP K +L T+ + A GAG S A F HLCV D+Y GQ+ V + F+ W V GP KDG I ++++R
Sbjct: 669 FLLGRWAVSKSFDYRKGGGRGILEGYATITD----------------------------------VLMYEERGDMQLEGFPRPVEAYRFYCFNTGCWPVEVYFVDDPTKKHLPPLLPELSVHTSFFVPL---AFEGAG----------------SPESLATFRHLCVDDLYSGQLRVGSADSFEWNWSVEGPNKDGDIKASYQR 819
BLAST of mRNA_H-canaliculatus_F_contig1407.3220.1 vs. uniprot
Match: A0A7S3ULH3_OXYMA (Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3ULH3_OXYMA) HSP 1 Score: 66.6 bits (161), Expect = 2.570e-9 Identity = 51/196 (26.02%), Postives = 78/196 (39.80%), Query Frame = 3
Query: 570 KTIDYKAGGMAGTWQGVATFSPQQKSFESSNESAAPQEEIDDKDGVHSSSDSADLLLLRYLEQGTFRVNGKGAGFEAGQRLVYDCSGHVVRVHFVDDPKKPDSLRFFHQLDFRTASEPSVDTTATAGAGGGAETSGKASMPGEKKSASPR-AEFEHLCVRDMYRGQVEVVGPNEFKTRWHVTGPQKDGRIHSTFKR 1154
K ++Y+ GG G +G ATF+P + DLLL Y E G + A ++ ++ V V+FVDD K + P V+ G G TS +P + P A F HLC++D+Y G++ + F+ W + GP KDG I +TF++
Sbjct: 2 KELNYRVGGGCGVVKGTATFTP--------------------------TLTHPDLLL--YEETGDLLLENAAAALSVSKKYAFNTGVWPVEVYFVDDNTKLED-------------PPVVE-------GAGFHTSFFHELPLADDAVLPTVASFSHLCIQDLYTGELRFPSESSFEWNWTIVGPMKDGTILTTFEK 149
BLAST of mRNA_H-canaliculatus_F_contig1407.3220.1 vs. uniprot
Match: A0A812XNV2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812XNV2_9DINO) HSP 1 Score: 60.8 bits (146), Expect = 1.040e-7 Identity = 40/122 (32.79%), Postives = 57/122 (46.72%), Query Frame = 3
Query: 795 EAGQRLVYDCSGHVVRVHFVDDPKKPDSLRFFHQLDFRTASEPSVDTTATAGAGGGAETSGKASMPGEKKSASPRAE--FEHLCVRDMYRGQVEVVGPNEFKTRWHVTGPQKDGRIHSTFKR 1154
EA + ++ S V V+FVDDP K +L+ T+ + A GAG SP +E F HLC+ D+Y GQ+ V + F+ W V GP KDG I +T++R
Sbjct: 11 EAYRFYCFNTSCWPVEVYFVDDPTKKHLPSLLPELNVHTSFFVPL---AFEGAG------------------SPESEGTFRHLCIDDLYSGQLRVNSADSFEWNWSVQGPNKDGEIKATYRR 111 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1407.3220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1407.3220.1 >prot_H-canaliculatus_F_contig1407.3220.1 ID=prot_H-canaliculatus_F_contig1407.3220.1|Name=mRNA_H-canaliculatus_F_contig1407.3220.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=326bp MLPVRLLALTVCSYLTPAIRKPLRPQPHRSCYHNWRPLSLSTDRERQRTAback to top mRNA from alignment at H-canaliculatus_F_contig1407:22175..24552+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1407.3220.1 ID=mRNA_H-canaliculatus_F_contig1407.3220.1|Name=mRNA_H-canaliculatus_F_contig1407.3220.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2378bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1407:22175..24552+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1407:22175..24552+ >mRNA_H-canaliculatus_F_contig1407.3220.1 ID=mRNA_H-canaliculatus_F_contig1407.3220.1|Name=mRNA_H-canaliculatus_F_contig1407.3220.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1956bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1407:22175..24552+ (Hapterophycus canaliculatus Oshoro5f female)back to top |