mRNA_H-canaliculatus_F_contig14063.3216.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14063.3216.1
Unique NamemRNA_H-canaliculatus_F_contig14063.3216.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14063.3216.1 vs. uniprot
Match: A0A6H5L2Q4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q4_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.310e-17
Identity = 45/73 (61.64%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   76 LTGEHGGKLSSRGFTPIVDLAADLAVGGGSDLLGQLRRSYNAKPPSS---AAPPGSRPVVKVGKRLRDDVPPK 285
            + GEHGGK +SR FTPI DL  D   G G   L QLRRSY AK  SS   A+ PGSRP VKVGKRLRD++ PK
Sbjct:    1 MIGEHGGK-ASRSFTPIADLGIDTGGGSGRGTLDQLRRSYTAKDASSSSTASKPGSRPTVKVGKRLRDEIAPK 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14063.3216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2Q4_9PHAE1.310e-1761.64Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14063contigH-canaliculatus_F_contig14063:275..1915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue5.8e-12
Seed eggNOG ortholog2880.D7FR28
KEGG koko:K03654,ko:K10901
KEGG Pathwayko03018,ko03440,ko03460,map03018,map03440,map03460
KEGG ModuleM00295,M00414
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size320
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14063.3216.1prot_H-canaliculatus_F_contig14063.3216.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14063 275..1915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929157.4358687-CDS-H-canaliculatus_F_contig14063:274..3841622929157.4358687-CDS-H-canaliculatus_F_contig14063:274..384Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14063 275..384 +
1696845698.551884-CDS-H-canaliculatus_F_contig14063:274..3841696845698.551884-CDS-H-canaliculatus_F_contig14063:274..384Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14063 275..384 +
1622929157.4952905-CDS-H-canaliculatus_F_contig14063:1282..14211622929157.4952905-CDS-H-canaliculatus_F_contig14063:1282..1421Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14063 1283..1421 +
1696845698.5633807-CDS-H-canaliculatus_F_contig14063:1282..14211696845698.5633807-CDS-H-canaliculatus_F_contig14063:1282..1421Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14063 1283..1421 +
1622929157.5343368-CDS-H-canaliculatus_F_contig14063:1846..19151622929157.5343368-CDS-H-canaliculatus_F_contig14063:1846..1915Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14063 1847..1915 +
1696845698.5744097-CDS-H-canaliculatus_F_contig14063:1846..19151696845698.5744097-CDS-H-canaliculatus_F_contig14063:1846..1915Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14063 1847..1915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14063.3216.1

>prot_H-canaliculatus_F_contig14063.3216.1 ID=prot_H-canaliculatus_F_contig14063.3216.1|Name=mRNA_H-canaliculatus_F_contig14063.3216.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=106bp
QVAAGGDGGGGGGEGDSSHDDHCMLLTGEHGGKLSSRGFTPIVDLAADLA
VGGGSDLLGQLRRSYNAKPPSSAAPPGSRPVVKVGKRLRDDVPPKKTHQE
HRPEPP
back to top

mRNA from alignment at H-canaliculatus_F_contig14063:275..1915+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14063.3216.1 ID=mRNA_H-canaliculatus_F_contig14063.3216.1|Name=mRNA_H-canaliculatus_F_contig14063.3216.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1641bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14063:275..1915+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTAGCAGCGGGAGGGGATGGTGGCGGCGGGGGGGGTGAAGGGGACAG
CAGCCACGATGACCACTGCATGCTGCTGACCGGAGAGCACGGAGGAAAGC
TGTCCTCTAGGTGGGTGGCGTGGCGTGGCGTGGCGTGGTATAGTAAAGTA
TGGTATGGTATAGTATGGTATGGTATGGTATGGTATGGTATGGTATGACG
TGGCGTGGCGTGGCATGGCTTGGCGTGGTATGGTATGGTATGGTATGGTA
TGGTATGGTGTGGCGTGGCGTGGCGTGGCGTGGTCTGATATGGCATGGTA
TGGCATGGTATGGTATGGTATGGTATGGTATGGTATGGTGTGGCATGGCG
TGGCGTGGCGTGGTATGGTATGGCATGGTATGGTATGGTACGGTATGGTA
TGGTGTGGCGTGGCGTGGCGTGGCGTGGCGCGCCGTGCTTGTCTCGTCTG
CCTGCTGGTCTGGCCGTCTGCCTGCTGGTCTGGCCGTCTGCCTGCTTGCT
TGAAGACCTAAGGGTTCGTCTCTGAGTCTTTCTGGGGGCGTATCTGCCTG
CTTGCCTGCTCGCCTGCTCGCCTGCTTGCCTGCTTGCCTGCGTGCCTGCG
TGCAATCTTGACTACGTGCAAACAAGTATGTGTATTCTGCCCGGACGGTC
TATCGAGCATCCCCTCCGTCGAGTCGCCGCAGCAAGCAAGGCATACCACG
ACCAAGATTCCTGCATGCAGAAATTACCTCTAGCGAACGTGGGAGGCGTC
CTGTCACTCTGACTCCGACTTCAAAAGGGCCTCCTTCAAGGCCCACATGG
CCGCTGCTGCCACCTCACCACCAGCCCCAGCAACCTTTGCACGCTTCAAC
AACAAGCGAAGGCCCTCTGCCGCGCAGCCGTTTAGTCATGCAGCATAGCC
CCCACCAGCAAACCATGCAAACCATTCGATTCTAAATCTGGTTCAACCAT
CCGACCAAACCCAACCGCCGCCGATCGACCCACGGTCCCGTCGCCCCCGC
GACGCCAGGGGGTTCACGCCCATCGTCGACCTCGCCGCCGACCTCGCCGT
GGGAGGAGGGTCGGACCTGCTGGGCCAGCTGCGGCGGAGCTACAACGCCA
AACCCCCGTCTTCCGCTGCGCCACCCGGGTCGCGCCCCGTGGTCAAGGTG
GGGATGCCTTGTGCTTCATCGGGCAAAATATTTAGCGGGAGGGGGGGGGG
TTCATCCTACGGTCGCAAGATTCCGCCGTCCGCCCAGCGTGGGCCCGATC
GCGCTACACATGTGTTGCTGTATTCATGCAGGGAGGGTTGTCTGGGGTTG
TGGTTGTGCCGCCGAGAAAACGCGTATACACCGGGTTTTTTTAATCGGTG
TTATTATTGTTTCTTTGGAGGGGTGTTGTGCTTGGTTTGGTGCCGCGTTC
CAGCGGGACCGATCCGTTCTTTTTTCTCGTTATTTTTTCGTTCCAGCACC
AAAATGCCGGGAAATGCTGAAAGATGCCCTGAGCTGGAACGATCGATCCA
CTTTTTCCAAGACAAAGGATCCCACGAAATATACGCGCCATGTCATACGT
GAACGCTAACCGAATGACGCAGGTCGGAAAGCGGCTCAGGGACGATGTCC
CGCCCAAGAAGACGCATCAGGAGCATCGCCCCGAGCCGCCT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14063:275..1915+

>mRNA_H-canaliculatus_F_contig14063.3216.1 ID=mRNA_H-canaliculatus_F_contig14063.3216.1|Name=mRNA_H-canaliculatus_F_contig14063.3216.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=636bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14063:275..1915+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTAGCAGCGGGAGGGGATGGTGGCGGCGGGGGGGGTGAAGGGGACAG
CAGCCACGATGACCACTGCATGCTGCTGACCGGAGAGCACGGAGGAAAGC
TGTCCTCTAGCAGGTAGCAGCGGGAGGGGATGGTGGCGGCGGGGGGGGTG
AAGGGGACAGCAGCCACGATGACCACTGCATGCTGCTGACCGGAGAGCAC
GGAGGAAAGCTGTCCTCTAGGGGGTTCACGCCCATCGTCGACCTCGCCGC
CGACCTCGCCGTGGGAGGAGGGTCGGACCTGCTGGGCCAGCTGCGGCGGA
GCTACAACGCCAAACCCCCGTCTTCCGCTGCGCCACCCGGGTCGCGCCCC
GTGGTCAAGGGGGTTCACGCCCATCGTCGACCTCGCCGCCGACCTCGCCG
TGGGAGGAGGGTCGGACCTGCTGGGCCAGCTGCGGCGGAGCTACAACGCC
AAACCCCCGTCTTCCGCTGCGCCACCCGGGTCGCGCCCCGTGGTCAAGGT
CGGAAAGCGGCTCAGGGACGATGTCCCGCCCAAGAAGACGCATCAGGAGC
ATCGCCCCGAGCCGCCTGTCGGAAAGCGGCTCAGGGACGATGTCCCGCCC
AAGAAGACGCATCAGGAGCATCGCCCCGAGCCGCCT
back to top