mRNA_H-canaliculatus_F_contig1406.3214.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1406.3214.1
Unique NamemRNA_H-canaliculatus_F_contig1406.3214.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1406.3214.1 vs. uniprot
Match: D7FLS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLS7_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 5.640e-75
Identity = 125/133 (93.98%), Postives = 132/133 (99.25%), Query Frame = 1 
Query:    1 MAQPGRSPEVDAELKKLQGVQNVELQALAASRSQFYQQANENGMVKQELDLLEDDAPVFKLIGPVLMKQDLEEAKQNVAKRLELIQREMAKVSKAFEEKQKEEAAIGDEIMRIQGGMKERAAEEARKIMQGAA 399
            MAQPGRSPEVDAELKKLQGVQ+ ELQALAASRSQFYQQANENGMVKQELDLLED+APVFKL+GPVL+KQDLEEAKQNVAKRLELI+REMAKVSKAFEEKQKEEAAIGDEIMR+QGGMKERAAEEARKIM+GAA
Sbjct:    1 MAQPGRSPEVDAELKKLQGVQS-ELQALAASRSQFYQQANENGMVKQELDLLEDEAPVFKLVGPVLIKQDLEEAKQNVAKRLELIEREMAKVSKAFEEKQKEEAAIGDEIMRMQGGMKERAAEEARKIMEGAA 132
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1406.3214.1 vs. uniprot
Match: A0A835ZF83_9STRA (Prefoldin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF83_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.380e-36
Identity = 76/129 (58.91%), Postives = 95/129 (73.64%), Query Frame = 1 
Query:   10 PGRSPEVDAELKKLQGVQNVELQALAASRSQFYQQANENGMVKQELDLLEDDAPVFKLIGPVLMKQDLEEAKQNVAKRLELIQREMAKVSKAFEEKQKEEAAIGDEIMRIQGGMKERAAEEARKIMQGA 396
            P  +  VD ELK+ Q +Q+ EL   +  R+Q YQQANENGMVKQEL+LL+    VFK+I PVL+KQDL+EAK NVAKR+E IQ EMAKV K  E K KE+A IGD I ++QG M+ RAAEEARK ++ +
Sbjct:    5 PAPTRAVDVELKRYQELQD-ELTQFSQVRNQLYQQANENGMVKQELELLKPGTKVFKMITPVLLKQDLDEAKVNVAKRIEFIQGEMAKVEKQIEAKTKEQAEIGDNIAKMQGEMQARAAEEARKAVEAS 132
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1406.3214.1 vs. uniprot
Match: A0A7S2Y415_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y415_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.900e-36
Identity = 70/122 (57.38%), Postives = 94/122 (77.05%), Query Frame = 1 
Query:   25 EVDAELKKLQGVQNVELQALAASRSQFYQQANENGMVKQELDLLEDDAPVFKLIGPVLMKQDLEEAKQNVAKRLELIQREMAKVSKAFEEKQKEEAAIGDEIMRIQGGMKERAAEEARKIMQ 390
            EV+AE++K + + N E+Q L   R + YQQANENGMVKQELDLL+   PV+K+IGPVLMKQDL+EA+ NVAKRL+LIQREM ++    E KQK++A +G++IM++Q  M+ RA E A+K  Q
Sbjct:    7 EVEAEVEKYKAL-NAEIQELMEKRQKTYQQANENGMVKQELDLLDSTTPVYKMIGPVLMKQDLDEARDNVAKRLDLIQREMKRIEGTLEGKQKQQAELGEKIMKMQQAMQARAVEAAKKAYQ 127
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1406.3214.1 vs. uniprot
Match: A0A3F2RF90_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RF90_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.050e-27
Identity = 62/121 (51.24%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:   25 EVDAELKKLQGVQNVELQALAASRSQFYQQANENGMVKQELDLLEDDAPVFKLIGPVLMKQDLEEAKQNVAKRLELIQREMAKVSKAFEEKQKEEAAIGDEIMRIQGGMKERAAEEARKIM 387
            +V+AE+ + + +Q+ E+Q LAA R  + QQANEN MVK+ELDLL+++A VFKL+GPVL+KQD++EAK NV KRLE I  E+ KV+   E K+KE   I   I  +Q  M++RAAE A+  +
Sbjct:    7 QVEAEMTRYRALQD-EVQVLAAQRQTYAQQANENDMVKKELDLLDEEAKVFKLVGPVLLKQDVDEAKTNVNKRLEFINNELGKVNTKIEAKEKEAMGIRTNISNMQMEMQKRAAEAAKSAV 126
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1406.3214.1 vs. uniprot
Match: H3GRS3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRS3_PHYRM)

HSP 1 Score: 107 bits (268), Expect = 1.490e-27
Identity = 61/121 (50.41%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:   25 EVDAELKKLQGVQNVELQALAASRSQFYQQANENGMVKQELDLLEDDAPVFKLIGPVLMKQDLEEAKQNVAKRLELIQREMAKVSKAFEEKQKEEAAIGDEIMRIQGGMKERAAEEARKIM 387
            +V+AE+ + + +Q+ E+Q LA+ R  + QQANENGMVK EL+LL+D+A V+KL+GPVL+KQD +EAK NV KRLE I  E++KV+   E K+KE   I   I  +Q  M++RAAE A+  +
Sbjct:    7 QVEAEMTRYRALQD-EVQVLASQRQTYAQQANENGMVKTELELLDDEARVYKLVGPVLLKQDADEAKTNVNKRLEFINNELSKVNTKIENKEKEAIGIRSNISSMQMDMQKRAAEAAKSAV 126
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1406.3214.1 vs. uniprot
Match: A0A8K1CR62_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR62_PYTOL)

HSP 1 Score: 107 bits (267), Expect = 1.940e-27
Identity = 63/121 (52.07%), Postives = 85/121 (70.25%), Query Frame = 1 
Query:   25 EVDAELKKLQGVQNVELQALAASRSQFYQQANENGMVKQELDLLEDDAPVFKLIGPVLMKQDLEEAKQNVAKRLELIQREMAKVSKAFEEKQKEEAAIGDEIMRIQGGMKERAAEEARKIM 387
            +VDAE+ + + +Q  E+Q LA  R Q+ QQA+EN MV+QELDLL DDA VFKLIGPVL+KQD  EAK NV KRLE I  E+ K +K  E+K+K+   I   I ++Q  M+++AA  AR ++
Sbjct:    6 QVDAEMARYRTLQE-EVQVLATQRQQYAQQASENTMVQQELDLLGDDAKVFKLIGPVLLKQDASEAKTNVKKRLEFINNELEKANKKIEQKEKDAVEIRKNIAQMQMEMQKQAAAAARSVV 125
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1406.3214.1 vs. uniprot
Match: D0NCV8_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NCV8_PHYIT)

HSP 1 Score: 107 bits (266), Expect = 2.990e-27
Identity = 61/118 (51.69%), Postives = 84/118 (71.19%), Query Frame = 1 
Query:   25 EVDAELKKLQGVQNVELQALAASRSQFYQQANENGMVKQELDLLEDDAPVFKLIGPVLMKQDLEEAKQNVAKRLELIQREMAKVSKAFEEKQKEEAAIGDEIMRIQGGMKERAAEEAR 378
            +VD E+ + + +Q+ E+Q LA  R  + QQANEN MVK+ELDLL+D+A V+KL+GPVL+KQD +EAK NV KRLE I  E+ KV+   E K+KE   I + I  +Q  M++RAAE A+
Sbjct:    7 QVDTEMARYRALQD-EVQVLATQRQTYAQQANENDMVKKELDLLDDEAKVYKLVGPVLLKQDADEAKSNVNKRLEFINNELNKVNSKIEAKEKEAVGIRNNISNMQMEMQKRAAEAAK 123
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1406.3214.1 vs. uniprot
Match: A0A5D6XI54_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI54_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.080e-27
Identity = 64/118 (54.24%), Postives = 83/118 (70.34%), Query Frame = 1 
Query:   25 EVDAELKKLQGVQNVELQALAASRSQFYQQANENGMVKQELDLLEDDAPVFKLIGPVLMKQDLEEAKQNVAKRLELIQREMAKVSKAFEEKQKEEAAIGDEIMRIQGGMKERAAEEAR 378
            +VDAE+ + + +Q  E+Q LA  R Q+ QQANEN MVK+ELDLL DDA VFKLIGPVL+KQD++EAK NV KRLE I  E+ KV+   + K+K+   I   I  +Q  M++RA E AR
Sbjct:    8 QVDAEMARYRVLQE-EVQVLATQRQQYAQQANENTMVKKELDLLSDDAKVFKLIGPVLLKQDVDEAKANVNKRLEFINNELQKVNAKIDLKEKDAVEIRSTIASLQMEMQKRATEAAR 124
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1406.3214.1 vs. uniprot
Match: F0WAV7_9STRA (Uncharacterized protein AlNc14C48G3819 n=2 Tax=Albugo TaxID=65356 RepID=F0WAV7_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.890e-27
Identity = 62/123 (50.41%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:   19 SPEVDAELKKLQGVQNVELQALAASRSQFYQQANENGMVKQELDLLEDDAPVFKLIGPVLMKQDLEEAKQNVAKRLELIQREMAKVSKAFEEKQKEEAAIGDEIMRIQGGMKERAAEEARKIM 387
            S  VD E  K   +Q  ELQ L A + ++ QQANEN MVKQELDL+ D+  V+K++GPVL+KQDLEEAK NV KR+E I+ E+ KV+K  E+K+ E   +  EI  IQ  M+++AAE +R  +
Sbjct:    2 SKRVDVETAKYHVLQE-ELQVLVAQQQKYRQQANENNMVKQELDLVHDETKVYKMVGPVLLKQDLEEAKTNVNKRIEFIKHELYKVTKKIEDKENEAIEVRKEIATIQMEMQKQAAEASRNAI 123
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1406.3214.1 vs. uniprot
Match: G5AJ95_PHYSP (Uncharacterized protein n=11 Tax=Peronosporaceae TaxID=4777 RepID=G5AJ95_PHYSP)

HSP 1 Score: 105 bits (263), Expect = 8.510e-27
Identity = 60/118 (50.85%), Postives = 85/118 (72.03%), Query Frame = 1 
Query:   25 EVDAELKKLQGVQNVELQALAASRSQFYQQANENGMVKQELDLLEDDAPVFKLIGPVLMKQDLEEAKQNVAKRLELIQREMAKVSKAFEEKQKEEAAIGDEIMRIQGGMKERAAEEAR 378
            +V+AE+ + + +Q+ E+Q LA  R  + QQANEN MVK+ELDLL+D+  V+KL+GPVL+KQD++EAK NV KRLE I  E++KV+   E K+KE   I   I  +Q  M++RAAE A+
Sbjct:    7 QVEAEMTRYRALQD-EVQVLATQRQTYAQQANENDMVKKELDLLDDETKVYKLVGPVLLKQDVDEAKTNVNKRLEFINNELSKVNSKIEAKEKEAIGIRTNISNMQMEMQKRAAEAAK 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1406.3214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLS7_ECTSI5.640e-7593.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZF83_9STRA1.380e-3658.91Prefoldin n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
A0A7S2Y415_9STRA1.900e-3657.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A3F2RF90_9STRA1.050e-2751.24Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
H3GRS3_PHYRM1.490e-2750.41Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A8K1CR62_PYTOL1.940e-2752.07Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0NCV8_PHYIT2.990e-2751.69Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A5D6XI54_9STRA3.080e-2754.24Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
F0WAV7_9STRA3.890e-2750.41Uncharacterized protein AlNc14C48G3819 n=2 Tax=Alb... [more]
G5AJ95_PHYSP8.510e-2750.85Uncharacterized protein n=11 Tax=Peronosporaceae T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1406contigH-canaliculatus_F_contig1406:20416..25800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score230.7
Seed ortholog evalue4e-58
Seed eggNOG ortholog2880.D7FLS7
Preferred namePFDN6
KEGG koko:K02989,ko:K04798
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006457,GO:0007021,GO:0008092,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015631,GO:0016043,GO:0016272,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051082,GO:0051087,GO:0051131,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0071840,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG1382@1,KOG3478@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPrefoldin
Ec32 orthologEc-03_005180.1
Exons6
Model size402
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1406.3214.1prot_H-canaliculatus_F_contig1406.3214.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1406 20416..25800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929156.1615257-CDS-H-canaliculatus_F_contig1406:20415..204821622929156.1615257-CDS-H-canaliculatus_F_contig1406:20415..20482Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1406 20416..20482 +
1696845698.4540038-CDS-H-canaliculatus_F_contig1406:20415..204821696845698.4540038-CDS-H-canaliculatus_F_contig1406:20415..20482Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1406 20416..20482 +
1622929156.1843061-CDS-H-canaliculatus_F_contig1406:22050..221241622929156.1843061-CDS-H-canaliculatus_F_contig1406:22050..22124Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1406 22051..22124 +
1696845698.4690611-CDS-H-canaliculatus_F_contig1406:22050..221241696845698.4690611-CDS-H-canaliculatus_F_contig1406:22050..22124Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1406 22051..22124 +
1622929156.1966827-CDS-H-canaliculatus_F_contig1406:22925..229761622929156.1966827-CDS-H-canaliculatus_F_contig1406:22925..22976Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1406 22926..22976 +
1696845698.482754-CDS-H-canaliculatus_F_contig1406:22925..229761696845698.482754-CDS-H-canaliculatus_F_contig1406:22925..22976Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1406 22926..22976 +
1622929156.215558-CDS-H-canaliculatus_F_contig1406:23663..237371622929156.215558-CDS-H-canaliculatus_F_contig1406:23663..23737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1406 23664..23737 +
1696845698.4929056-CDS-H-canaliculatus_F_contig1406:23663..237371696845698.4929056-CDS-H-canaliculatus_F_contig1406:23663..23737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1406 23664..23737 +
1622929156.2289205-CDS-H-canaliculatus_F_contig1406:24919..249801622929156.2289205-CDS-H-canaliculatus_F_contig1406:24919..24980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1406 24920..24980 +
1696845698.5022418-CDS-H-canaliculatus_F_contig1406:24919..249801696845698.5022418-CDS-H-canaliculatus_F_contig1406:24919..24980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1406 24920..24980 +
1622929156.2422404-CDS-H-canaliculatus_F_contig1406:25725..258001622929156.2422404-CDS-H-canaliculatus_F_contig1406:25725..25800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1406 25726..25800 +
1696845698.5120397-CDS-H-canaliculatus_F_contig1406:25725..258001696845698.5120397-CDS-H-canaliculatus_F_contig1406:25725..25800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1406 25726..25800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1406.3214.1

>prot_H-canaliculatus_F_contig1406.3214.1 ID=prot_H-canaliculatus_F_contig1406.3214.1|Name=mRNA_H-canaliculatus_F_contig1406.3214.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=134bp
MAQPGRSPEVDAELKKLQGVQNVELQALAASRSQFYQQANENGMVKQELD
LLEDDAPVFKLIGPVLMKQDLEEAKQNVAKRLELIQREMAKVSKAFEEKQ
KEEAAIGDEIMRIQGGMKERAAEEARKIMQGAA*
back to top

mRNA from alignment at H-canaliculatus_F_contig1406:20416..25800+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1406.3214.1 ID=mRNA_H-canaliculatus_F_contig1406.3214.1|Name=mRNA_H-canaliculatus_F_contig1406.3214.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5385bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1406:20416..25800+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGCAGCCTGGAAGGAGCCCCGAGGTGGACGCGGAGCTGAAGAAGCT
GCAGGGTGTACAGAACGGTGAGTGTGTGCGTACGTGGGCCGTGCGATCTT
CAGCCGCGATGGGATTCGATGGATTGGTTGGTAGTGAGGAGGTGGCGTTG
AGCTTGCGAAGGCATTTTGTCTCCAGCTGTACAGTACTTCCAGAGCAGAC
GATACAAGCGGACGCGATTTGAATGCATCGGACAAGCACGCACGCCACAG
CAGTCTGCCCTAAGGGCGTCGGTAGCACTTTCAGCGGAGGACGGTGGCAC
TGCTTTAAGGAGCACAAAAGGCGATCGTCTATGTATTGCAGGGCGATCAG
CGATCGGTATCGAATGTGGTGTCCTCTTCTGTGTCTGCTGTATCTCCTCC
ATTTTGTCCGCGGGATCTCCGATCTGCCCTCCGATCTCCCGTTGTTTCTC
CTTCGGCGGTAGGAGTTGCCCCGCGTCCAGGCGCCAACTACGAGTTTAGA
GCAGATACTATTTCAACCGCATCATGAGCATGATGGGGGGAATTCCGGCA
ACTCTGCCTGTTCGAACACGGCGTCAATTATGACCCACGTATCAGGAATA
TGGGTGTGACATATTTTAAACGACGTACTAGACTCCGTTGCCGACGAAGG
GGTGGGCGCAAAAGTTAAGAGCTGCAGTTTGATACCAGGTAGCAGAAGTT
TGATACCCAGGTTTCGTACTTGTAGCTTGTCTGGCATTATTTGCCGAGGA
CTTTGGCTCCAAGCGTACGTTTACATTACCTTAACGGTCGGCAATGGGAC
GGTCCATACGCAGAGTCACGTCGTTCAAAGCTCCTCAAAAGCCATGAAGC
CGTCAGTGCAAGCGCCTGCTCGCTCCGTCATATTGAGGGCTGCTGCCCTG
ACTGCAGTATCAGGCGTTTGGCTTGCTGGGTTCGTGCACCGTAAACAGCA
TAATTATGTGTCACCACAAAAGGCACGTACAACAGTACGTCGGATTGTGA
TACGTTCCCCCGTGCAAGCATCTCCTATCTCCTCCTTTCCAAGTCTGATG
CGCGCGACAGAGTCTTGTTTGGAATCAGATAGGCATTCCTTCGTGAAGGT
GACACCACGCACTGTCCCCTCTCCCCTGTGCCCTCTCCGCTGTCGAGAAG
ATTATTACGTCGTTACATCCATGTGCCGAGAATCTCGGTGGCCGAACTGT
CGATGGGAAGAAAGGGGGCGTCGGTAGGAGTGTCCCAAGAGCTCACTCCG
CACGAGATTTAGCTGGAGCAGATGCATCCTTGCGGCAAGGCGGCAAGGGC
ACCTCTATCTCCGGAGATCACGCTGCCCATGTCAATCAGAAGTGCCGTTC
ACCTGTTGGACCACCTTCACCCTCACCGTCATTCCACGCATCATACGCGC
CGAAAGCCTGCGACGGCACGGCCCCCGTCCCCCCCCCTTCTCAAACTGAC
GGGCTGGCTGTGTGCACGGTGCCCGCGCAACGCCCCACTTTGTGCTGTCT
GCTGCAGCAGCCTGGCTGAAACTTCGCTTCCTTTGTTTCGTTTGCTTTTC
TACGCGTCCCTTTCGTTCTGAGCCGTCCGATTCCGCTCTCTTGTTCTTCT
ACTTGTGTACTTGTATCTTCTGTCTTGTTTTCGAGTAGAGCTCCAGGCAC
TCGCGGCCTCGCGCAGCCAGTTCTACCAGCAGGCGAACGAGAACGGCATG
GTGAAGCAGGTGCGCTCAGAAGGCGACGTAACACTGGTATGCGTAAGATT
TCCTTCGAAGTATGATGTATATAATGTTTATTCCACGTACTCCTCTTTGA
GAACGTTCAGGAGGCAACGTGTGCTGTGGGCTAAATACGGCCTCGTCCCG
AATTGCGGCCTGGTGTGGTCGATTGCATGTGTTCATGTCCCTCTCCGACA
CAGTGCCCTTCACGAAAAAATGCCGAATGGTGCCTTCTAGACATGCATAC
TTGCTAGCTTACCCTCAAGCGGTAAAGTCGGAGTCGCTCCACCGCAGCCG
CCGGGGTCGCACGTCCGTTAGCCTTGCCCTTTTCCGCGCATAAGTCAAAG
GGCCAAAGGGCCAAAGGGTTCCCATTCGGTACCACTTTTCCCTCTCCCTG
TCCTCTCTTTGTTATTGGCGCTGACTCGTTAGCTTTGCGTCTTGAATCAT
GGTGTGATTCGGAGTTTCACAGGATGCCTGAAGATGATGGAGTTGGACGA
CCAGGCTGAAAACACGCAGAGTGCTGCGGACTTTGGCATGCAGGCTGCTG
TAGACGATCGTGGACCTCCGTACGGTCCCATTGTGGCTTTGGGAAAATCT
CCTTGTGTGGCACGAGCTTGCCCAGCGTTGTTAGGGTCCAGGTCTGCAAG
AATGGCCTGGTGACGGCGTTAGCACTCGAACTCTGGTTTTGGTGCCCACC
GTTCCGTTCCTTTGTATAGAACACGTGAGACACCTGTCTTAGCCGAGGCG
CTCGATAAATAGGCCTCGTCGCAATAGAAACAATCCCACGCACGCAAATC
GGTTTTCCAGGAATTGGATCTGCTGGAGGACGATGCTCCCGTCTTCAAGC
TCATTGGCCCGGTGAGCACTGCGGGTCCTCTCGTAGACACATATGACACG
TGCCGTAGGGTTATGGTGTTTGCGAGGGTCGATGTGTAATCGGTATACAG
GTAATGGTCGATGCGAAACGGCAAGCTGTCGGGTCCTTTATGAAGTCTTT
AATTTGTCGTTCAGATTCGGAACCGAAAGCCGAAAAGGCGGACTGAAGTT
TGTGTGAAAGCATCGCTGCAAGCATCGCTGCCTGCTTTGGTACCCAACCT
CGATACTTTGTATTCCATTAGTCCGTGTGGCCTATTTGGTTGGCCGGCTG
GACTGGCGCGGAAAACGGAGGGTTTATATCGAGGTCAGACGTGCCCTGAA
AACAGGAGACGTCAGCAGCAAAGAAGCACGTTGGAGAAGACTCCGACCTC
GTTTGAAGCACTCTTCTTGCCATGACGTCGAGGGTAGCGCTTCCTTGAAG
CGGTTACTAGGAAGAGAGACGCCTGTAACTACGTTCGATGCCGCATGTTC
TATTCATGCAGGCACGTATCCTTTTTTGTTTGTGAAACAGGTGGCGTGTT
CTCAATGGTCACCGCACGCTGCATTTTTAATGACATGTTTCCCGGCTTCT
TGTTCGCGGAAAGGGTGCTGGTTACGCGGGAACTTGTTGAGGCCGTGAGA
AGCCAACCGTAGCCCGTGCCCCGATCACACCCCCGCCTTCGCGTACAGGT
GCTGATGAAGCAGGACCTGGAGGAAGCCAAGCAAAACGTTGCAAAGCGTC
TGGAGCTCATCCAGCGAGAGATGTAAGCGTGTACTTCGTCTGCGTTCACC
ATCTTCCACGGCGTTAACGTTACGATTCTTTCGTTTGCAAGTAGCACGCA
TACCTCCGATGCGGCTGTCTCTCTTACCTGCTGGCTGCAGTTATAAGTAT
GCCAGTTGATACTGACGGCGAGGGTGTTCCTCTGGACAAAGAGTTTCGCG
TGTGGTCTGCACGTTTCGGCATTGTTTCTGTTGCATTTCCTTGTTGCGGT
TCGAAAATCAGGCAGCATAGGCGTCGCCGCGAGTGAAGAACGTGGGTGCA
CTTGTACTTATAGTGTCAAGTCTCACGGTAACGCCTCGTCCTTGTTCCCG
AGGCTTGTTCTGTACCTTCCGCCCCCGCAAAGTACAACGGCATACTAGTA
CACGCATGGTTACGTACACGAGCACGCTCGTTGTGTGTGGACCGCAGCCG
CTGGCACACGCCTGGCACACGCCTGCGGTGTTTCTACCGCCCTGTTCCCT
CGGGGCTTTTGGCTCAAGCAAACAACAGTTGAGAACAAAGCCTTCCATCG
GCTCGGATATTTGTTGATACCCTTTGGTTGGATCAGCATTCTCCACGCGG
GAGCAAACGCTTTTGGCGTCAGCTTCAAGAAAGCAGCCGAGTGGGGTGCC
GAGAACGCCGTTGTAAGTCGTTTGGTCTGCCAATGCCTGGGTCGCTTCAG
GCGCAACAGATATTCGTGGCCATGGTGTACGGCGAGTCGTGAGAGCTCGG
CGTGCAGGTTTCAAGCCATTGAATATTTTTCAAACCATTCGGCGAGATGA
GAAATAAACGGTTTGCGGAGCTAGACGCGGTGCGTTCACAAGCACGTGTC
CTGAAAAAACTCTTGACCGCCTCATAGTGCTTTCCAGGCTCCTTCTTGAA
CCGACGCCTCTTCAAGGGCGTTAGCAAAATGGCCCTTTCGTGCACGTTCT
CCCTACACCAACGTTCACATGCGTTGCCCCCCGCGTTGATCGTTCACCGG
CCTGTTCGGATTTTGCGTCGCCACTTGATTTGCTTTTCACTGCAAGGATT
TCCCTTCGTCTTGTTTTCACCTCCTTTTTTTCGTCTTCCCTTCGTCTTAT
TTCCACCTCCTTTTTTTCGTCTTACCTTCGTCTTGTTTTCACCTCCTGTT
TTTCGTCTCACCTTCGTCTTCCTCTCTTGTGTGCGTCTCTTTTTCGCCTT
GCAGGGCGAAGGTTTCCAAGGCCTTCGAGGAGAAGCAGAAGGAGGAGGCC
GCGATAGGAGATGAGGTGAATGCCCCTGCCATACCCCCTGCCCTCCATCG
TCAGGATAACCCCCCTCCCCGAACTACTTTGATTTTTTGAAATTTCCGAA
TGCAATTAGCACGCACCAAACGCTCATCAAGGCGAGTGTCTTCAAGAATG
AAAAAGGCGTGGGTTCTGGAAGATAATGGATGATGCAGCGACCTCAAGTA
AACCTCAAGCCATCGGAACTGTCTTGAATGTCCCTCGGCAAGGCACATTA
TTTTGCACAAGAGTTTGGGAAACGACGGTCGACGGTCGTGCGGGTCGAAC
GAGATGAAGGCCTCTGAATGACTGGTCTAAGATTGACCGCTCGGATTTTT
TATTTTGGAACGCGGCGCAACTCGCGCCTATTCGGCACGTTCAATGTCAC
GTACGTACTTACGTTTGTCGTCGTGCCCTTCGTCCTGATTCGTCCCAGCG
TCGTGGTGCTGTACAGAAATGCAGTAGGGGGATATTGAAGGCCCCGGCGA
CTCTCGCCGTCCTGTTGCAGGCCAACACCGCCGTGGCGTTCAACTCCGGG
TCGGGGGGATCCAAGGAGTAACGTAGCCGCATCCTTGTCAGTGCCTTCGT
CGGGCGTGAAACCTCAGCCACCACACCACATCCCCATCGTACGCTCGAAT
TTTTTGCTGCACAGCTCTGGAGCAAACCGGCGGGCTTGTTACTCCGCCTA
GAATGCTTAACCCCCCCTCCTCAAACGTGATGTGCGTTCCGCTGTTGGGG
CCCTTCGCAGATCATGCGGATACAAGGGGGCATGAAAGAGCGAGCAGCAG
AGGAGGCGCGAAAGATCATGCAGGGAGCGGCATGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1406:20416..25800+

>mRNA_H-canaliculatus_F_contig1406.3214.1 ID=mRNA_H-canaliculatus_F_contig1406.3214.1|Name=mRNA_H-canaliculatus_F_contig1406.3214.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=804bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1406:20416..25800+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGCAGCCTGGAAGGAGCCCCGAGGTGGACGCGGAGCTGAAGAAGCT
GCAGGGTGTACAGAACGATGGCGCAGCCTGGAAGGAGCCCCGAGGTGGAC
GCGGAGCTGAAGAAGCTGCAGGGTGTACAGAACGTAGAGCTCCAGGCACT
CGCGGCCTCGCGCAGCCAGTTCTACCAGCAGGCGAACGAGAACGGCATGG
TGAAGCAGTAGAGCTCCAGGCACTCGCGGCCTCGCGCAGCCAGTTCTACC
AGCAGGCGAACGAGAACGGCATGGTGAAGCAGGAATTGGATCTGCTGGAG
GACGATGCTCCCGTCTTCAAGCTCATTGGCCCGGAATTGGATCTGCTGGA
GGACGATGCTCCCGTCTTCAAGCTCATTGGCCCGGTGCTGATGAAGCAGG
ACCTGGAGGAAGCCAAGCAAAACGTTGCAAAGCGTCTGGAGCTCATCCAG
CGAGAGATGTGCTGATGAAGCAGGACCTGGAGGAAGCCAAGCAAAACGTT
GCAAAGCGTCTGGAGCTCATCCAGCGAGAGATGGCGAAGGTTTCCAAGGC
CTTCGAGGAGAAGCAGAAGGAGGAGGCCGCGATAGGAGATGAGGGCGAAG
GTTTCCAAGGCCTTCGAGGAGAAGCAGAAGGAGGAGGCCGCGATAGGAGA
TGAGATCATGCGGATACAAGGGGGCATGAAAGAGCGAGCAGCAGAGGAGG
CGCGAAAGATCATGCAGGGAGCGGCATGAATCATGCGGATACAAGGGGGC
ATGAAAGAGCGAGCAGCAGAGGAGGCGCGAAAGATCATGCAGGGAGCGGC
ATGA
back to top