mRNA_H-canaliculatus_F_contig1404.3205.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1404.3205.1 vs. uniprot
Match: D8LK34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK34_ECTSI) HSP 1 Score: 381 bits (978), Expect = 3.040e-111 Identity = 240/336 (71.43%), Postives = 266/336 (79.17%), Query Frame = 1
Query: 1033 DNEGHVSAEEVPREERLRFRLLAHTLVEALWDQLLLDVSGGGGVFALGDTSRLIGTTVAAAAEDVKRIALERPATSSFGGEAVGRSISSNTGSHGSGSGDHGLGRNRSYGSTRREASVVLVDRTLDLAAAASHGGSLLQRILSSVARTGTQNPAALSSSPASSSAPEALAAAAWSPASAAHQQDVGVVLPMLSPGLGLPARRSAGQVGGGXXXXXXXXXXXXXXXXDSPVGSEGGGGKPPRLRAMKALAGFAWPAPPSLCHAGRGAEAAAGVVHALASLGEEEGQAALVSALEKCVADNGCVPPPRKRRGMGSSIMALVMSLARGSPRAGGLPGER 2040
+ GHVSAEEVPR ERLR+RLLAHTLVEALWDQLLLDVSGGGGVF LGDTSRLIGTTVAA AED+KR++LERPA FGGE S SS G G G + + + RREASVVL+DR LD+AAAASHGGSLLQRILSS+ RTGT N A PA+ S+PEA+A WSP++AAHQQDVGVVLPML+PGLGLPAR +A + G XXXXXXXXXXXXXX GKPPRL AMKAL+GF W APPSLCH+G A AAAGVVHA+A GEEEGQAAL+SALEKCV+DNGCVPPPRKRRGMGSSIMALV SLARG+PRAGGL G+R
Sbjct: 298 ETRGHVSAEEVPRGERLRYRLLAHTLVEALWDQLLLDVSGGGGVFTLGDTSRLIGTTVAAVAEDLKRVSLERPAPPGFGGEGGADSASSGRGG--------GFGSDGAGPAARREASVVLIDRNLDVAAAASHGGSLLQRILSSIDRTGTPNSAV----PATPSSPEAVAID-WSPSAAAHQQDVGVVLPMLTPGLGLPARAAAVERSGXXXXXXXXXXXXXXX------------GKPPRLLAMKALSGFPWRAPPSLCHSGGDAGAAAGVVHAMACHGEEEGQAALISALEKCVSDNGCVPPPRKRRGMGSSIMALVTSLARGNPRAGGLSGDR 608
BLAST of mRNA_H-canaliculatus_F_contig1404.3205.1 vs. uniprot
Match: A0A7S2RG32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RG32_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 5.590e-5 Identity = 36/102 (35.29%), Postives = 51/102 (50.00%), Query Frame = 2
Query: 137 LFLDDGTTEAVRWAGGLGFVLEELGISQVLDLQVFAPGRGRVGAAKAP-EAERLTRG---IFLVTNFVWDVEGAVLNAARTYGLTEVTLACSISEEAHACHP 430
LFLDD EA++WAGGL F LEELG VL L + P G G P E L RG + ++ + +W+ + ++ G +E L + + HA P
Sbjct: 34 LFLDDVAAEALKWAGGLPFALEELGAQAVLRLGDYGPP-GETGEGGLPGEVSVLPRGDRVVVVLASALWEAQHELIAVLTGTGASEALLCPAQDGDRHAVEP 134 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1404.3205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1404.3205.1 >prot_H-canaliculatus_F_contig1404.3205.1 ID=prot_H-canaliculatus_F_contig1404.3205.1|Name=mRNA_H-canaliculatus_F_contig1404.3205.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=465bp MSLLSSRTPRAVLQSYGDPRSFSNTLSLRRPMAIPARGLPTYHAHCSYLCback to top mRNA from alignment at H-canaliculatus_F_contig1404:2142..14458+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1404.3205.1 ID=mRNA_H-canaliculatus_F_contig1404.3205.1|Name=mRNA_H-canaliculatus_F_contig1404.3205.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=12317bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1404:2142..14458+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1404:2142..14458+ >mRNA_H-canaliculatus_F_contig1404.3205.1 ID=mRNA_H-canaliculatus_F_contig1404.3205.1|Name=mRNA_H-canaliculatus_F_contig1404.3205.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2790bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1404:2142..14458+ (Hapterophycus canaliculatus Oshoro5f female)back to top |