mRNA_H-canaliculatus_F_contig1403.3201.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1403.3201.1
Unique NamemRNA_H-canaliculatus_F_contig1403.3201.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1403.3201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1403contigH-canaliculatus_F_contig1403:3615..5570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF4558
Ec32 orthologEc-17_004120.1
Exons4
Model size294
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1403.3201.1prot_H-canaliculatus_F_contig1403.3201.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1403 3615..5570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929153.3920796-CDS-H-canaliculatus_F_contig1403:3614..36691622929153.3920796-CDS-H-canaliculatus_F_contig1403:3614..3669Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1403 3615..3669 -
1696845697.229519-CDS-H-canaliculatus_F_contig1403:3614..36691696845697.229519-CDS-H-canaliculatus_F_contig1403:3614..3669Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1403 3615..3669 -
1622929153.7758343-CDS-H-canaliculatus_F_contig1403:4361..45161622929153.7758343-CDS-H-canaliculatus_F_contig1403:4361..4516Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1403 4362..4516 -
1696845697.2392595-CDS-H-canaliculatus_F_contig1403:4361..45161696845697.2392595-CDS-H-canaliculatus_F_contig1403:4361..4516Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1403 4362..4516 -
1622929153.7905726-CDS-H-canaliculatus_F_contig1403:4979..50301622929153.7905726-CDS-H-canaliculatus_F_contig1403:4979..5030Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1403 4980..5030 -
1696845697.2488897-CDS-H-canaliculatus_F_contig1403:4979..50301696845697.2488897-CDS-H-canaliculatus_F_contig1403:4979..5030Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1403 4980..5030 -
1622929153.8056133-CDS-H-canaliculatus_F_contig1403:5537..55701622929153.8056133-CDS-H-canaliculatus_F_contig1403:5537..5570Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1403 5538..5570 -
1696845697.2582095-CDS-H-canaliculatus_F_contig1403:5537..55701696845697.2582095-CDS-H-canaliculatus_F_contig1403:5537..5570Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1403 5538..5570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1403.3201.1

>prot_H-canaliculatus_F_contig1403.3201.1 ID=prot_H-canaliculatus_F_contig1403.3201.1|Name=mRNA_H-canaliculatus_F_contig1403.3201.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
MAARARAREAELRCNAENVKIHDTTAALARWALTSEKAAIRAERRRQLET
ERAEMELANIELVVRRSARLRELYHKLDDRYEAELNARGLALAKARA*
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mRNA from alignment at H-canaliculatus_F_contig1403:3615..5570-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1403.3201.1 ID=mRNA_H-canaliculatus_F_contig1403.3201.1|Name=mRNA_H-canaliculatus_F_contig1403.3201.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1956bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1403:3615..5570- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTGCACGGGCGAGGGCACGCGAGGCTGAGGTGGGTCTGAACGTCTT
TATTTTTTGTTGAGCTCAGCTCCGAGCTCGGAACCGCTGACATGTGACGG
TGCTCAAACCCAAAGCGAAGATTCTTTCTGCCAACTCACTCCTCTGCCGC
CGGGCTGTGCTTGACGGGAGGAGCAAAGAAATACACCAAAATCCGCCTCC
TACGAGCACTGCTGTAACGATCGAGGGTCATCCGTTCTTGCACAAAACCT
CGGATACGGATGAAGACCTCCCGCCTCATTTTGGAAACATCGTATGCGAA
AACCTGTTCGTGGGTGAGTATATTGTACTGCAGAGGCAGTGAGTTTACTC
GAGGTGGTCTATGAACCCTACAGTAGTATGATAACATAATTATACTTCAG
ACACATGTACAGTCTAAAGAAACAAATATCTTGCGTGAACTCTTCTCCCT
GACTGGCTTGGACGCGAGATCTGACGTAACTGCATGCTTCTCTCGGCTGA
AGCCTGCTGCTCCGTCCGTATTCCCGTGGTTGTTTCACAGCTACGCTGCA
ACGCGGAGAATGTCAAGATCCACGATACCACCGCCGCGCTGGTAAGAGAG
AGAACGCCGAACGAATGGGAAAGAGAGCATTAGACTATTGGGAAAGAGAG
CATTAGACTATTACAGTAGATGAAGTCGCGCTTGCTTACAAGGCACGAGC
TCCCACCTTTCGCTGTATGGAGGGCACCTCAGCGAACCATACACAAACCA
ACTTTGCAGATGGGATACTGCTGTATCTGGGAAATGAGACCGCGCGATTC
CGGAGGGAATGAGCTTGTTGTGTGGTTTGGAGCGAAGGATGTTCATCATC
GTTGGCGGTAGCGCGGTGGTCTATGGTTGGTTTATTTGGATGGAAATATC
AGTTGTTTTACTTGTCCCTGGGAAGCTGGAAGTATCTGTACTATAAACCT
TGCCATTCCTGGTGGAGGTTGTCGCTTTCGGAATGCAGAACAGACAGCAT
CAAATCGTGGAAACATTTCGATGTTCTCGCTTACTTCTGCAACTTTCTTC
GTAGGCCCGGTGGGCGTTGACCTCCGAGAAAGCCGCGATACGAGCAGAAC
GACGTCGGCAATTGGAGACCGAAAGGGCCGAAATGGAGCTCGCTAACATC
GAGCTTGTCGTCAGGCGCTCAGCTCGACTAAGGGAACTATATCACAAGCT
CGATGACAGGTGCACATCGGTTTGTATTAGCTGTACGAAAGGCCGTCAAC
GGTCCACGTCAAAATATAGCAGCTAGCTGTGAAGATTTTCCTTCAGAGGG
AGCACTGCCGTTCTACGCGAAAAAGAACCCTCCGAACACCGTTGGTTCCA
CTGGGAAGAAATTGATGCGTCGTGTCTATGCTGGCTGGATACAATGCGAC
GCTCAAAGCGTGTGATTCGAGCATATGGTCATCGACTGCAAAGCTGATGT
TTGCAAATGATCGAGCAGAACAAGTTTTTTTTTTAATGTCACAGCAGTAA
CGAACGCGCAATGAACCAGCATTTCCCGTGAACTGACGCCACTCGAACAA
CAGCTTCTTCAAGTACCATAGCTTCTCCGCCTCGACTACCTTAGTTGAAG
CTTCACCGTGAAATTCCGGGGTCATGCGTAAAATACTGTTCCCTCTCGTC
GATGCGCGAAGCCTTCGTTAGATCTCAACCTCTGGCTTTTGCGATACAAA
CCAAGACCTGCCACAACTACTCATCATAATGACTTTCGTGTGACCATACA
GCAATAATTCCACAAAGCGCCGCGCGCAACAAAGTGTGGCCGTGCCACGC
TATGAGAGCGGCTCACTGAGGCTGCTATCGAACGTAGAAGATCAGTGTTG
CTACGGGCGTGTGCTCCGCGCTTGACCCCTCCCCCTGCCACTTTTCGACA
GGTACGAAGCGGAGCTTAACGCCAGAGGGTTGGCGCTCGCGAAGGCGAGG
GCGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1403:3615..5570-

>mRNA_H-canaliculatus_F_contig1403.3201.1 ID=mRNA_H-canaliculatus_F_contig1403.3201.1|Name=mRNA_H-canaliculatus_F_contig1403.3201.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1403:3615..5570- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTGCACGGGCGAGGGCACGCGAGGCTGAGATGGCTGCACGGGCGAG
GGCACGCGAGGCTGAGCTACGCTGCAACGCGGAGAATGTCAAGATCCACG
ATACCACCGCCGCGCTGCTACGCTGCAACGCGGAGAATGTCAAGATCCAC
GATACCACCGCCGCGCTGGCCCGGTGGGCGTTGACCTCCGAGAAAGCCGC
GATACGAGCAGAACGACGTCGGCAATTGGAGACCGAAAGGGCCGAAATGG
AGCTCGCTAACATCGAGCTTGTCGTCAGGCGCTCAGCTCGACTAAGGGAA
CTATATCACAAGCTCGATGACAGGCCCGGTGGGCGTTGACCTCCGAGAAA
GCCGCGATACGAGCAGAACGACGTCGGCAATTGGAGACCGAAAGGGCCGA
AATGGAGCTCGCTAACATCGAGCTTGTCGTCAGGCGCTCAGCTCGACTAA
GGGAACTATATCACAAGCTCGATGACAGGTACGAAGCGGAGCTTAACGCC
AGAGGGTTGGCGCTCGCGAAGGCGAGGGCGTAAGTACGAAGCGGAGCTTA
ACGCCAGAGGGTTGGCGCTCGCGAAGGCGAGGGCGTAA
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