mRNA_H-canaliculatus_F_contig14029.3200.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14029.3200.1
Unique NamemRNA_H-canaliculatus_F_contig14029.3200.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14029.3200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14029contigH-canaliculatus_F_contig14029:935..2385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size452
Cds size450
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14029.3200.1prot_H-canaliculatus_F_contig14029.3200.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14029 935..2385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929153.203451-CDS-H-canaliculatus_F_contig14029:934..11201622929153.203451-CDS-H-canaliculatus_F_contig14029:934..1120Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14029 935..1120 -
1696845697.1542444-CDS-H-canaliculatus_F_contig14029:934..11201696845697.1542444-CDS-H-canaliculatus_F_contig14029:934..1120Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14029 935..1120 -
1622929153.2195675-CDS-H-canaliculatus_F_contig14029:1779..19471622929153.2195675-CDS-H-canaliculatus_F_contig14029:1779..1947Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14029 1780..1947 -
1696845697.1628995-CDS-H-canaliculatus_F_contig14029:1779..19471696845697.1628995-CDS-H-canaliculatus_F_contig14029:1779..1947Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14029 1780..1947 -
1622929153.2352264-CDS-H-canaliculatus_F_contig14029:2289..23851622929153.2352264-CDS-H-canaliculatus_F_contig14029:2289..2385Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14029 2290..2385 -
1696845697.1717906-CDS-H-canaliculatus_F_contig14029:2289..23851696845697.1717906-CDS-H-canaliculatus_F_contig14029:2289..2385Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14029 2290..2385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14029.3200.1

>prot_H-canaliculatus_F_contig14029.3200.1 ID=prot_H-canaliculatus_F_contig14029.3200.1|Name=mRNA_H-canaliculatus_F_contig14029.3200.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=150bp
AWATIAAEGDQLKRLEADVQRWRETCAHTSAQLREERGLAEEIAQRLAEK
EATVRQLTARLREMRAMATPAVATVAEAGSHSSTGVRQRRGQLSCEKPTE
EAKRNTSNGSSSADGDDGYGDLHTAGRDGGSDEERGEGEGEAVGGASPRA
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mRNA from alignment at H-canaliculatus_F_contig14029:935..2385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14029.3200.1 ID=mRNA_H-canaliculatus_F_contig14029.3200.1|Name=mRNA_H-canaliculatus_F_contig14029.3200.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1451bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14029:935..2385- (Hapterophycus canaliculatus Oshoro5f female)
GCGTGGGCGACCATCGCTGCAGAAGGCGACCAGCTGAAGCGGTTGGAGGC
AGACGTGCAGCGTTGGCGGGAGACCTGCGCGCACACCAGTGCCCAGGTAC
GTTTCTCACGAGGCCAGCAGTTGCCTGCTTCTCGATTCGCTGCTTCAAGG
GTATGCCCGTGAGTGAGTACGTCTGTCTCTCGTGAGGGTGTGAGTCGTTG
TGCTCGCGTCGCCAACCGCGTCCATCCGATCGGCCGACGAAAATAAGATG
GCTCGCAAGCGGGGGCGACAGCGGCAGGGCCCTGTCCCCGTCGATTCCCC
CCATTCTCGCGCGCTCTGGCCCTTCCCGGCGTACGTGTTTGTGGCCACGA
GGCGACTCTTCCGATGCCGACAGAGCTCTCCCACCCGTCCTTCTTCGTGG
TCTCCTTACCGCCTCGCCGCATCCTCCCCCTCTTCCAGCTACGGGAGGAG
AGAGGCCTCGCGGAGGAGATAGCTCAGCGCCTCGCCGAGAAGGAGGCCAC
GGTGCGACAGCTGACCGCGAGGCTGCGCGAGATGCGGGCGATGGCGACAC
CAGCTGTGGCGACGGTGGCAGAAGCGGGGAGCCATTCCTCGACGGGTGTC
CGACAGGTGGGTGGCAACGCGGCGGCCTCACGCTACTCTTGTCTCCTGCG
CGACGGAGGGCCTGCGTACGTGGGATCGGGTGCTCGTTGGCGTAGCGGTG
TTTGGTCGTGTCGATGGGCGAAGGTACGATTTACCTCCGGGGGTGCGGGG
AGCAGGCGTTCGTTGCTCTCGTCTCTCTCGAGTGGCACGAAGCCTGGGCT
GGCGAATACACATCCTGTCGCCGCTCGGAGGAAACCTGTGCGTCCTCCTG
CTGCTGCTGTCACCGTTGTGTTATCCTTATGTCCAGAGCGCTTCGAAGGG
AGTAGCATCGCGACGAAGGGTGCGGAAGTACATCTTGGTAGAACCCGGCA
GACCTGGCTGTGAAGCGTACGTTGCAGGTCTCGCTCAGGTTGCTGTACCA
GGGACTTCGTTGAGGCGGGAAATCATGCAAGACAGTTTTGTTCGTAATGA
ACAACCAAGTGTCGTTAGTATTGTCTCCAAGCAGGCGCCGTGGTTCATGC
GTCCACGGAAACGCTGCTGGGCTAATTTTAATGTTTTGGCTCTTCTGTGG
TAGCATCACGGGGGCGATGCCCCGATATCGCTTGTTCGTCGTCGTGGTGC
GTATCCTCATCTTTCCCGCCTGCCCGCCCTCACGATGGTTGCGCTGCGCG
TGTTTGCGTTACCAGCGCCGTGGTCAGCTCTCCTGCGAGAAACCTACCGA
GGAAGCAAAGCGCAACACCAGCAACGGCAGCAGCAGCGCCGACGGCGACG
ACGGCTACGGAGACCTCCACACCGCCGGTCGTGACGGCGGCAGCGACGAA
GAAAGGGGAGAAGGAGAAGGAGAAGCCGTCGGAGGTGCGTCGCCGAGGGC
C
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14029:935..2385-

>mRNA_H-canaliculatus_F_contig14029.3200.1 ID=mRNA_H-canaliculatus_F_contig14029.3200.1|Name=mRNA_H-canaliculatus_F_contig14029.3200.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=900bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14029:935..2385- (Hapterophycus canaliculatus Oshoro5f female)
GCGTGGGCGACCATCGCTGCAGAAGGCGACCAGCTGAAGCGGTTGGAGGC
AGACGTGCAGCGTTGGCGGGAGACCTGCGCGCACACCAGTGCCCAGGCGT
GGGCGACCATCGCTGCAGAAGGCGACCAGCTGAAGCGGTTGGAGGCAGAC
GTGCAGCGTTGGCGGGAGACCTGCGCGCACACCAGTGCCCAGCTACGGGA
GGAGAGAGGCCTCGCGGAGGAGATAGCTCAGCGCCTCGCCGAGAAGGAGG
CCACGGTGCGACAGCTGACCGCGAGGCTGCGCGAGATGCGGGCGATGGCG
ACACCAGCTGTGGCGACGGTGGCAGAAGCGGGGAGCCATTCCTCGACGGG
TGTCCGACAGCTACGGGAGGAGAGAGGCCTCGCGGAGGAGATAGCTCAGC
GCCTCGCCGAGAAGGAGGCCACGGTGCGACAGCTGACCGCGAGGCTGCGC
GAGATGCGGGCGATGGCGACACCAGCTGTGGCGACGGTGGCAGAAGCGGG
GAGCCATTCCTCGACGGGTGTCCGACAGCGCCGTGGTCAGCTCTCCTGCG
AGAAACCTACCGAGGAAGCAAAGCGCAACACCAGCAACGGCAGCAGCAGC
GCCGACGGCGACGACGGCTACGGAGACCTCCACACCGCCGGTCGTGACGG
CGGCAGCGACGAAGAAAGGGGAGAAGGAGAAGGAGAAGCCGTCGGAGGTG
CGTCGCCGAGGGCCCGCCGTGGTCAGCTCTCCTGCGAGAAACCTACCGAG
GAAGCAAAGCGCAACACCAGCAACGGCAGCAGCAGCGCCGACGGCGACGA
CGGCTACGGAGACCTCCACACCGCCGGTCGTGACGGCGGCAGCGACGAAG
AAAGGGGAGAAGGAGAAGGAGAAGCCGTCGGAGGTGCGTCGCCGAGGGCC
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