mRNA_H-canaliculatus_F_contig14004.3185.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14004.3185.1
Unique NamemRNA_H-canaliculatus_F_contig14004.3185.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14004.3185.1 vs. uniprot
Match: D8LGM1_ECTSI (F-box domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM1_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.570e-23
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    7 NVSEDVTAAILGNLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 162
            NVSEDVTAAILG+LDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP
Sbjct:   90 NVSEDVTAAILGDLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 141
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BLAST of mRNA_H-canaliculatus_F_contig14004.3185.1 vs. uniprot
Match: A0A6H5L5A3_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A3_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 7.660e-23
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    7 NVSEDVTAAILGNLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 162
            NVSEDVTAAILG+LDA DLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP
Sbjct:  680 NVSEDVTAAILGDLDAHDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 731
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14004.3185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGM1_ECTSI1.570e-2398.08F-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L5A3_9PHAE7.660e-2396.15F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14004contigH-canaliculatus_F_contig14004:219..563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-10_002720.1
Exons1
Model size347
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929151.4009109-CDS-H-canaliculatus_F_contig14004:218..5631622929151.4009109-CDS-H-canaliculatus_F_contig14004:218..563Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14004 219..563 +
1696845696.4580038-CDS-H-canaliculatus_F_contig14004:218..5631696845696.4580038-CDS-H-canaliculatus_F_contig14004:218..563Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14004 219..563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14004.3185.1prot_H-canaliculatus_F_contig14004.3185.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14004 219..563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14004.3185.1

>prot_H-canaliculatus_F_contig14004.3185.1 ID=prot_H-canaliculatus_F_contig14004.3185.1|Name=mRNA_H-canaliculatus_F_contig14004.3185.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
SSNVSEDVTAAILGNLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFL
GHVPTPEGQKTAGDAAAAAAVASAAAAAAAAGAGASSRGTGLGGIFGGLG
GGATLPQYRRHQLQP
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mRNA from alignment at H-canaliculatus_F_contig14004:219..563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14004.3185.1 ID=mRNA_H-canaliculatus_F_contig14004.3185.1|Name=mRNA_H-canaliculatus_F_contig14004.3185.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=345bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14004:219..563+ (Hapterophycus canaliculatus Oshoro5f female)
TCTTCCAACGTCAGCGAGGACGTGACGGCCGCGATCCTCGGCAACCTCGA
CGCGCGCGATCTGGCGAGGGCGGCGGCGACTAGCCGCGGCTGGCGCCGGT
GCACGAGCTCCCGGGTCCTCTGGGCGGCCGTGTACGCGAGAGACTTTCTC
GGCCACGTACCGACCCCCGAGGGCCAAAAGACCGCGGGGGATGCCGCCGC
CGCCGCCGCTGTCGCCTCAGCAGCAGCAGCAGCAGCAGCCGCGGGCGCTG
GCGCTAGCAGCAGGGGGACGGGCCTCGGCGGGATCTTTGGTGGTCTTGGT
GGTGGAGCGACGCTGCCTCAGTATCGTCGCCACCAGCTGCAGCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14004:219..563+

>mRNA_H-canaliculatus_F_contig14004.3185.1 ID=mRNA_H-canaliculatus_F_contig14004.3185.1|Name=mRNA_H-canaliculatus_F_contig14004.3185.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14004:219..563+ (Hapterophycus canaliculatus Oshoro5f female)
TCTTCCAACGTCAGCGAGGACGTGACGGCCGCGATCCTCGGCAACCTCGA
CGCGCGCGATCTGGCGAGGGCGGCGGCGACTAGCCGCGGCTGGCGCCGGT
GCACGAGCTCCCGGGTCCTCTGGGCGGCCGTGTACGCGAGAGACTTTCTC
GGCCACGTACCGACCCCCGAGGGCCAAAAGACCGCGGGGGATGCCGCCGC
CGCCGCCGCTGTCGCCTCAGCAGCAGCAGCAGCAGCAGCCGCGGGCGCTG
GCGCTAGCAGCAGGGGGACGGGCCTCGGCGGGATCTTTGGTGGTCTTGGT
GGTGGAGCGACGCTGCCTCAGTATCGTCGCCACCAGCTGCAGCCGTCTTC
CAACGTCAGCGAGGACGTGACGGCCGCGATCCTCGGCAACCTCGACGCGC
GCGATCTGGCGAGGGCGGCGGCGACTAGCCGCGGCTGGCGCCGGTGCACG
AGCTCCCGGGTCCTCTGGGCGGCCGTGTACGCGAGAGACTTTCTCGGCCA
CGTACCGACCCCCGAGGGCCAAAAGACCGCGGGGGATGCCGCCGCCGCCG
CCGCTGTCGCCTCAGCAGCAGCAGCAGCAGCAGCCGCGGGCGCTGGCGCT
AGCAGCAGGGGGACGGGCCTCGGCGGGATCTTTGGTGGTCTTGGTGGTGG
AGCGACGCTGCCTCAGTATCGTCGCCACCAGCTGCAGCCG
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