mRNA_H-canaliculatus_F_contig140.3173.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig140.3173.1
Unique NamemRNA_H-canaliculatus_F_contig140.3173.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig140.3173.1 vs. uniprot
Match: A0A6H5K262_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K262_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 4.540e-86
Identity = 161/196 (82.14%), Postives = 171/196 (87.24%), Query Frame = 1 
Query:    7 VVQPKKDYEARTARAAKSNILHSFADGRQLGATGRTTQALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAP--YGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEASKLAHREDAAKAGKNAAADPFTAAASTARKAASPF 588
            V QPKKDYEARTARAAKSNILHSFADGRQLGATGRTTQALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFR LVG LLSCGLTF+PQSA     S+ S+A AP  +GAA GAQEFALEPAIDQLL YEGY+FAHPRLAPPLRPMVAHEV LEGMR+AEA+KL+HREDAA A KN A+DPF AA+S  R    PF
Sbjct:  681 VTQPKKDYEARTARAAKSNILHSFADGRQLGATGRTTQALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRELVGILLSCGLTFSPQSA-----SSSSSASAPPAFGAATGAQEFALEPAIDQLLKYEGYEFAHPRLAPPLRPMVAHEVALEGMRKAEAAKLSHREDAAFA-KNEASDPFAAASSATRGTGHPF 870
[Close]
BLAST of mRNA_H-canaliculatus_F_contig140.3173.1 vs. uniprot
Match: W7TIW5_9STRA (Chromosome transmission fidelity n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIW5_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.030e-12
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   16 PKKDYEARTARAAKSNILHSFADGRQLGAT-GRTTQALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTF 264
            P+KD+E R+AR ++ +IL SF +G  L A   R    +VLD++S LM IL P+LRP+NPDL S  E+A  R LV  LL+CG+++
Sbjct:  422 PRKDHEYRSARLSRQHILQSFGEGCSLQALWARRPTPVVLDVVSPLMHILNPSLRPVNPDLYSFAEKAGLRHLVDVLLACGISY 505
[Close]
BLAST of mRNA_H-canaliculatus_F_contig140.3173.1 vs. uniprot
Match: A0A4D9CU49_9STRA (AAA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU49_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.070e-11
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:   16 PKKDYEARTARAAKSNILHSFADGRQLGAT-GRTTQALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTF 264
            P+KD+E R+AR ++ +IL SF +G  L A   R    +VLD++S LM IL P LRP+NPDL S  E+A  R LV  LL+CG+++
Sbjct:  823 PRKDHEYRSARLSRQHILQSFGEGCSLQAMWARRPTPVVLDVVSPLMHILNPNLRPVNPDLYSFAEKAGLRHLVDVLLACGISY 906
[Close]
BLAST of mRNA_H-canaliculatus_F_contig140.3173.1 vs. uniprot
Match: UPI000333E3A2 (chromosome transmission fidelity protein 18 homolog n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI000333E3A2)

HSP 1 Score: 70.5 bits (171), Expect = 6.570e-10
Identity = 56/170 (32.94%), Postives = 80/170 (47.06%), Query Frame = 1 
Query:   16 PKKDYEARTARAAKSNILHSFADGRQLGATGRTT-QALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEASKLAHREDAAKAG 522
            P    EA+  R+   N++     G       R T QALVLDML  L+D+L P LRP++  L S +E+ +  GLVGT+L+  LT+  +        TP           G   + LEP ++ +  +       P L    + +VA EV LE MR+ EA  L  +  AA  G
Sbjct:  719 PSSQQEAQNRRSQTENLIQMLVSGIAPSTRSRATPQALVLDMLCPLLDVLTPKLRPVSTQLYSAREKQQLAGLVGTMLAYSLTYRQER-------TPD----------GQYTYRLEPNVEDICRFPELPARKP-LTYQAKQLVAREVELEKMRRVEALALTAQGPAADGG 870
[Close]
BLAST of mRNA_H-canaliculatus_F_contig140.3173.1 vs. uniprot
Match: A0A8C3X7M3_9CETA (Chromosome transmission fidelity factor 18 n=1 Tax=Catagonus wagneri TaxID=51154 RepID=A0A8C3X7M3_9CETA)

HSP 1 Score: 70.1 bits (170), Expect = 8.830e-10
Identity = 53/164 (32.32%), Postives = 82/164 (50.00%), Query Frame = 1 
Query:    7 VVQPKKDYEARTARAAKSNILHSFADGRQLGATGRTT-QALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEASKLA 495
            +  P    EA++ R+   N++ +   G    A  R   QALVLD L  L+DILAP LRP++  L S +E+ +   LVGT+L+  LT+  + A TP                G   + LEP ++++  +       P L    + ++A E+ LE MR+AEA+  A
Sbjct:  722 IAYPSSQQEAQSRRSRTQNLIETLVSGITPAARSRAAPQALVLDTLCLLLDILAPKLRPVSTQLYSAREKQQLASLVGTMLAYSLTY--RQARTPD---------------GQYVYRLEPNVEEVCRFPELPARKP-LTYQAKQLLAREIELEKMRRAEAAARA 867
[Close]
BLAST of mRNA_H-canaliculatus_F_contig140.3173.1 vs. uniprot
Match: A0A2Y9DEN6_TRIMA (chromosome transmission fidelity protein 18 homolog n=1 Tax=Trichechus manatus latirostris TaxID=127582 RepID=A0A2Y9DEN6_TRIMA)

HSP 1 Score: 69.7 bits (169), Expect = 1.190e-9
Identity = 56/178 (31.46%), Postives = 85/178 (47.75%), Query Frame = 1 
Query:   16 PKKDYEARTARAAKSNILHSFADGRQLGATGRTT-QALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEASKLAHREDAAKAGKNAAADPF 546
            P    EA+   +   N++ +   G    A  R T QALVLD L  L+DIL P LRP++  L S +E+ +  GLVGT+L+  LT+  +        TP           G   + LEP ++++  +       P L    + ++A E+ +E MR+AEA   A +   A  G + AA P 
Sbjct:  726 PSSQQEAQNRTSQMQNLIQTLVSGITPSARSRATPQALVLDALCPLLDILTPKLRPVSTQLYSAREKQQLAGLVGTMLAYSLTYRQER-------TPD----------GQYTYRLEPNLEEICRFPELPARKP-LTYQAKQLIAREIEVEKMRRAEALAPAAQGPQADGGPSGAAGPL 885
[Close]
BLAST of mRNA_H-canaliculatus_F_contig140.3173.1 vs. uniprot
Match: A0A6I9KKZ8_CHRAS (chromosome transmission fidelity protein 18 homolog n=1 Tax=Chrysochloris asiatica TaxID=185453 RepID=A0A6I9KKZ8_CHRAS)

HSP 1 Score: 69.3 bits (168), Expect = 1.600e-9
Identity = 54/164 (32.93%), Postives = 80/164 (48.78%), Query Frame = 1 
Query:    7 VVQPKKDYEARTARAAKSNILHSFADGRQLGATGRTT-QALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEASKLA 495
            ++ P    EA+       N+L     G    A  R T QALVLD L  L+DIL P LRP++  L S +E+ +  GLVGT+L+  LT+  +               P G  A    + LEP ++++  +       P L    + ++A E+ +E MR+AEAS LA
Sbjct:  728 LIFPSSQQEAQNRMNQSQNLLQMLVSGITPSARSRATPQALVLDTLCPLLDILMPKLRPVSTQLYSAREKQQLAGLVGTMLAYSLTYRQE-------------RMPDGQYA----YRLEPNVEEICRFPELPTRKP-LTYQAKQLIAREIEVEKMRRAEASALA 873
[Close]
BLAST of mRNA_H-canaliculatus_F_contig140.3173.1 vs. uniprot
Match: UPI00187A781C (chromosome transmission fidelity protein 18 homolog isoform X1 n=14 Tax=Manis TaxID=9973 RepID=UPI00187A781C)

HSP 1 Score: 68.2 bits (165), Expect = 3.880e-9
Identity = 50/163 (30.67%), Postives = 78/163 (47.85%), Query Frame = 1 
Query:    7 VVQPKKDYEARTARAAKSNILHSFADGRQLGATGRTT-QALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEASKL 492
            VV P    EA++  +   N++ +   G       R T QALVLD L  L+DIL P LRP++  L S +E+ +   LVGT+L+  LT+  +                     G   + LEP +++L  +       P L    + ++AHE+ +E MR+AEA  +
Sbjct:  742 VVFPSSQQEAQSRTSRMQNLIQTLVSGIAPATRSRATPQALVLDTLCLLLDILTPKLRPVSTQLFSAREKQQLASLVGTMLAYSLTYRQERMPD-----------------GLYVYRLEPNVEELCRFPELPTRKP-LTYQAQQLIAHEIEMEKMRRAEARAM 886
[Close]
BLAST of mRNA_H-canaliculatus_F_contig140.3173.1 vs. uniprot
Match: A0A3Q0EB26_CARSF (LOW QUALITY PROTEIN: chromosome transmission fidelity protein 18 homolog n=1 Tax=Carlito syrichta TaxID=1868482 RepID=A0A3Q0EB26_CARSF)

HSP 1 Score: 67.8 bits (164), Expect = 5.090e-9
Identity = 52/164 (31.71%), Postives = 79/164 (48.17%), Query Frame = 1 
Query:    7 VVQPKKDYEARTARAAKSNILHSFADGRQLGATGRTT-QALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEASKLA 495
            +V P    EA+T      N+L +   G       RTT QAL+LD L  ++DIL P LRP++  L S +E+ +   LVGT+L+  LT+  +  A                  G   + LEP +++L  +       P L    + ++AHE+ +E MR+AE S  A
Sbjct:  648 MVFPSSQQEAQTRMNQTRNLLQTLVAGITPAMRSRTTPQALLLDALCLMLDILMPRLRPVSTQLYSAREKQQLASLVGTMLAYSLTYHQERTAD-----------------GQYVYRLEPNVEELCRFPELPTRKP-LTYQAKQLIAHEIEVEKMRRAEVSARA 793
[Close]
BLAST of mRNA_H-canaliculatus_F_contig140.3173.1 vs. uniprot
Match: A0A8C0K4R8_CANLU (Chromosome transmission fidelity factor 18 n=1 Tax=Canis lupus dingo TaxID=286419 RepID=A0A8C0K4R8_CANLU)

HSP 1 Score: 67.0 bits (162), Expect = 8.370e-9
Identity = 47/157 (29.94%), Postives = 77/157 (49.04%), Query Frame = 1 
Query:   16 PKKDYEARTARAAKSNILHSFADGRQLGATGRTT-QALVLDMLSHLMDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPSTPSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHEVNLEGMRQAEA 483
            P    EA++  +   N++H+   G       R T QAL+LD L  ++DILAP LRP++  L S +E+ +   LVGT+L+  LT+  +                     G   + LEP ++++  +       P L    + ++AHE+ +E MR+AEA
Sbjct:  458 PSSQQEAQSRTSRTQNLIHTLVAGIAPATRSRATPQALILDALCLILDILAPKLRPVSTQLYSTREKQQLASLVGTMLAYSLTYRQERRPD-----------------GQYIYRLEPNVEEVCRFPELPARKP-LTYQAKQLIAHEIEMEKMRRAEA 596
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig140.3173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K262_9PHAE4.540e-8682.14AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
W7TIW5_9STRA7.030e-1248.81Chromosome transmission fidelity n=2 Tax=Nannochlo... [more]
A0A4D9CU49_9STRA1.070e-1148.81AAA domain-containing protein n=1 Tax=Nannochlorop... [more]
UPI000333E3A26.570e-1032.94chromosome transmission fidelity protein 18 homolo... [more]
A0A8C3X7M3_9CETA8.830e-1032.32Chromosome transmission fidelity factor 18 n=1 Tax... [more]
A0A2Y9DEN6_TRIMA1.190e-931.46chromosome transmission fidelity protein 18 homolo... [more]
A0A6I9KKZ8_CHRAS1.600e-932.93chromosome transmission fidelity protein 18 homolo... [more]
UPI00187A781C3.880e-930.67chromosome transmission fidelity protein 18 homolo... [more]
A0A3Q0EB26_CARSF5.090e-931.71LOW QUALITY PROTEIN: chromosome transmission fidel... [more]
A0A8C0K4R8_CANLU8.370e-929.94Chromosome transmission fidelity factor 18 n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig140contigH-canaliculatus_F_contig140:8923..12357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.4
Seed ortholog evalue2.4e-76
Seed eggNOG ortholog2880.D7FQ00
Preferred nameCHTF18
KEGG koko:K11269
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0000819,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007131,GO:0007140,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031390,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035753,GO:0035825,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045005,GO:0045935,GO:0046483,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051321,GO:0051338,GO:0051347,GO:0051704,GO:0051716,GO:0051983,GO:0051985,GO:0060255,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0098813,GO:0140013,GO:0140014,GO:1900262,GO:1900264,GO:1901360,GO:1901576,GO:1903046,GO:1903047,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.ATP binding
EggNOG OGsKOG1969@1,KOG1969@2759
Ec32 ortholog descriptionsimilar to CTF18, chromosome transmission fidelity factor 18 homolog isoform 3
Ec32 orthologEc-01_008010.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons7
Model size859
Cds size858
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929146.9213378-CDS-H-canaliculatus_F_contig140:8922..89851622929146.9213378-CDS-H-canaliculatus_F_contig140:8922..8985Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 8923..8985 -
1696845695.5247746-CDS-H-canaliculatus_F_contig140:8922..89851696845695.5247746-CDS-H-canaliculatus_F_contig140:8922..8985Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 8923..8985 -
1622929146.9534261-CDS-H-canaliculatus_F_contig140:8994..93091622929146.9534261-CDS-H-canaliculatus_F_contig140:8994..9309Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 8995..9309 -
1696845695.5389082-CDS-H-canaliculatus_F_contig140:8994..93091696845695.5389082-CDS-H-canaliculatus_F_contig140:8994..9309Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 8995..9309 -
1622929146.976193-CDS-H-canaliculatus_F_contig140:10025..101301622929146.976193-CDS-H-canaliculatus_F_contig140:10025..10130Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 10026..10130 -
1696845695.5493648-CDS-H-canaliculatus_F_contig140:10025..101301696845695.5493648-CDS-H-canaliculatus_F_contig140:10025..10130Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 10026..10130 -
1622929146.997028-CDS-H-canaliculatus_F_contig140:10726..109211622929146.997028-CDS-H-canaliculatus_F_contig140:10726..10921Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 10727..10921 -
1696845695.559203-CDS-H-canaliculatus_F_contig140:10726..109211696845695.559203-CDS-H-canaliculatus_F_contig140:10726..10921Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 10727..10921 -
1622929147.0101223-CDS-H-canaliculatus_F_contig140:11199..112591622929147.0101223-CDS-H-canaliculatus_F_contig140:11199..11259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 11200..11259 -
1696845695.5692134-CDS-H-canaliculatus_F_contig140:11199..112591696845695.5692134-CDS-H-canaliculatus_F_contig140:11199..11259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 11200..11259 -
1622929147.0276434-CDS-H-canaliculatus_F_contig140:11833..119291622929147.0276434-CDS-H-canaliculatus_F_contig140:11833..11929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 11834..11929 -
1696845695.5871816-CDS-H-canaliculatus_F_contig140:11833..119291696845695.5871816-CDS-H-canaliculatus_F_contig140:11833..11929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 11834..11929 -
1622929147.0444267-CDS-H-canaliculatus_F_contig140:12333..123571622929147.0444267-CDS-H-canaliculatus_F_contig140:12333..12357Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 12334..12357 -
1696845695.6016307-CDS-H-canaliculatus_F_contig140:12333..123571696845695.6016307-CDS-H-canaliculatus_F_contig140:12333..12357Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig140 12334..12357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig140.3173.1prot_H-canaliculatus_F_contig140.3173.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig140 8923..12357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig140.3173.1

>prot_H-canaliculatus_F_contig140.3173.1 ID=prot_H-canaliculatus_F_contig140.3173.1|Name=mRNA_H-canaliculatus_F_contig140.3173.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=286bp
AAVVQPKKDYEARTARAAKSNILHSFADGRQLGATGRTTQALVLDMLSHL
MDILAPTLRPLNPDLLSPQERARFRGLVGTLLSCGLTFAPQSAATPSPST
PSTALAPYGAAAGAQEFALEPAIDQLLMYEGYDFAHPRLAPPLRPMVAHE
VNLEGMRQAEASKLAHREDAAKAGKNAAADPFTAAASTARKAASPFVVGG
DATAAAAQAGSAPATAAGSDRRNVVGDNKAGGDGGGAIEDGRAKAAAETA
AERKGEAAATAAAAAKANSKTPPSSPPANKKFRDIE
back to top

mRNA from alignment at H-canaliculatus_F_contig140:8923..12357-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig140.3173.1 ID=mRNA_H-canaliculatus_F_contig140.3173.1|Name=mRNA_H-canaliculatus_F_contig140.3173.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3435bp|location=Sequence derived from alignment at H-canaliculatus_F_contig140:8923..12357- (Hapterophycus canaliculatus Oshoro5f female)
GCTGCGGTTGTTCAGCCCAAGAAGGTTGGTTGGGAGCACGGATGGCGGAG
AAGGGGTTGGAAAGGGGCACGGGGGCGAAGGACTATGGCAGGGGCACGTG
CGTCCGTTTGTGCTCGAGAGGACGGCATTTTGTTTCCGTTTTCTGCTCTT
TTTTTCTCCTCCGGGTGGGAGGGTCTCGCGCGGATGTGTCGTTCTTCCTG
TCTTGGCCGGCAATTGATTTTTTCTTGGACTCATTTTTCCGTTCGATCCT
TGACAGCGGTCACCGCGTCTTTTTTTTTTTCGGTTCGGGTCACCGTTTCT
CGCGGCGTGTGGCGTCCGCACCTCGTCACCCCGCTCTCGCCCCGTGAGTC
CGCGTGTCCTCCTTTCTCTTAGCACTGTTTATTTCCTTGTTTTGAGGTGT
TTTTTTCACCTTGTTTTGAACCACGCAGGATTACGAGGCCCGCACAGCTC
GAGCCGCGAAGAGCAACATCTTGCACAGCTTCGCCGACGGACGCCAGCTG
GGGGCCACCGGGCGCACGACGCAGGCGAGCGCGGGAGGGTGCCAGGGGGA
TAGGGTGTCGGGATATAACGAACGAGACATTTTTCATGTCTTCTTTCTGC
GTGGACGGTTTTCAACCTCGAGTAGGAATTCAGAGTCAGGAAAACACACA
TTTAGATTCTTGGTTTGAAACGCGGACGTGTACTGCTCGATGGGAGAATC
GAGCCGACGCTTTGGCATGCTCCGTCCGAACGTCGCACCTTGCAAGGAGG
GTTGGTTCTGTGGCAGAGAAGTGGAATACTTGAAAGGAGCACGCTATCCG
TCGTGAGGTTCTGCTGACTCTTTGTGCTACCTTCTGTCTCGCACCCGCTC
ATCTAACCACCGCTCGACTGCTGTCGGCGTCCGTGGATCCGAGGTGACCC
TCCTGCGCTTTACACGGCCTAAGGTTTCGCTTCTGTTTGACGCAGCACAT
GTTGCGGTTGTTCTTGTTTTCTTGTCTGCAAGAAACAAGACCCACGGCGC
TTTCTCCGGCAGGCCGCCAACGAGATGACATTATTGGCATCCCAATGCCC
CCGCCCCTCTCCTCGCTTGGCGTTTCTTGTGTGTTTCTGTTGGTGCAGGC
CCTGGTGCTGGACATGCTGTCCCACCTGATGGACATCTTGGCACCCACCC
TTCGGCCGGTGAGACTTGTGTTTTTCAGCGTTCGCCGTCCACCACCACTC
AGCACCAGGACACGCGACATGTCTTCCGCTTGGGCGTTACGTTTGCTCCC
GAAATTCCCTAGCAAGGCCGCTTCCGAAAAATACACACAGGATGCTGATC
ACCATTGCCTCAATACTCTTAACCACAACACACCGGTAAATATAGACACC
CAGCCCCTCTTTCGCGCTGCGCGCTTATCTGAACTCCCTCCCTCTCCCCC
GCGCCCCACCAAAAAACTCAAAACCATCACGAACAGCTTAACCCGGACCT
CCTCAGCCCGCAGGAGCGAGCGCGGTTCCGCGGACTCGTCGGCACCCTCC
TCTCGTGCGGGCTCACGTTCGCACCGCAGTCGGCGGCAACGCCAAGTCCC
TCTACGCCGTCCACCGCCCTGGCTCCGTACGGGGCGGCGGCGGGGGCACA
GGAATTCGCCCTCGAACCTGCGATCGATCAGGTCTGGTTTGGTTTTCCTT
GTGACAGCGTGGTGTGGTGCACAATCGTGGCGAGCTGTGGCGTGGGGATG
ATTTTTTGTTGTGGTGTGGTGAGGTAAGGTGTGTGCGTATAGACGTTCAG
AGTGATGCAGTCTGTGATCGGGGTTGTTGTCTGAACAGCGGCGAGGCATC
AGCAGGGCCACTTGTCGTTTTTGACGCGCCAAAAATTATGCGGAGTAGAT
GGTCGGAGAGAGAGAGGGGGATGTATCTGAGGATGCATGGCTGCTCAAAA
TTGCAGCCGCTTCAAAAAGAAGCACGTGTTCGCCGTGGCGCAGGTGCGGC
CTGGGTCACTGATGTTCGCTACGTTTAGTCGAAGAGTTTTTCCCAACTCG
CTTTTCCTCGTTTGCGTATGGCTGCGATCATTCACACGCATCACTGCGAG
CATGCAGTGACACACGGATACACGGGCACCCATACGAGTACATGGCTTTG
ATTCTCGACTATCTCTTGCAATGTTTTTCGTGCGTTTGCAACTTTCTTCC
TGCGCCGCCGCCGCCGCCGCCGCCGATTCCGGTGCTCTCTTTGCTTTAAA
AAAAACTTCCACATACACACAAACCAGCTTCTGATGTACGAGGGGTACGA
CTTCGCACACCCTCGGTTGGCCCCCCCGCTCCGACCTATGGTGGCGCACG
AGGTCAACCTGGAAGGCATGCGCCAGGCAGAGGTGAGCAAGACAAAAGGC
ACCCACTCCAGAGTGGGCCACAAAGCGTGGCAGTCAAGGTGCATGCGCGC
GCCAGCCGCTTAGCTGGAGAAGTCGAACCGGCAATCGACCCCTGTGGTGC
TATTGCGAAAAACGTTCCGACTGCTGAGCCTGGAGGCCATACTTTCCGCG
AGAGAAGCTGATTTTATGGCGCAACCGTCGGTCTTGGTCGAATCCCAGCG
CAAAGCGGTATGCAGAATACGACAACATAGCAAGATGGTGTATCTTATGG
TTTGGGAGTCCCAACGTGTGGTGGGCCTGGCATGCGAGACTATGTTTCAT
GTTTTAGCTTATCGGTGGTGGACAAATCCATGCACAGACTTGCTTCCGTC
AGTGCTCTCTTTTGGTTTTCCAAGCGCTTCTTTCACGATGACCCCGCCCG
AGAAAAAAAGGCGGCGACAAATCGTAACCAGTGTGCCGCCGAAGTCGCTG
CGCAAGCATCTGTTTCCTAAGCAGTGTTGCTTCCGACAATAGACGAAAGC
AACGCGCTCTCTTATCCGCATCACAACGGACCACTCCCCCTTACTTTGGC
CCCAGTTTCTTGTCAAATGAAGATTCCTGGTTTGCCCAATGGTATGGTCC
CTACGGCAGTACTCCGACATCCTCTTCGCGCGTCGTGCCGTTCCTCTTTT
GCCGTATGTTGACTCCAACATGTCTTAACACAATCTCGCGCGCGGCAGGC
GTCCAAGCTGGCACACCGCGAGGATGCCGCCAAAGCTGGTAAGAACGCAG
CGGCGGACCCATTCACCGCCGCTGCCTCCACGGCACGAAAAGCAGCGTCG
CCGTTCGTTGTCGGTGGCGATGCGACGGCAGCAGCAGCGCAGGCAGGATC
AGCACCAGCCACCGCAGCTGGGAGCGACAGAAGGAATGTTGTTGGTGACA
ACAAAGCTGGCGGTGATGGTGGAGGAGCCATCGAAGATGGAAGAGCTAAA
GCAGCGGCAGAAACGGCGGCGGAACGAAAAGGGGAAGCGGCGGCGACGGC
GGCGGCGGCGGCGGCGACGAAGAAGGCGAACAGCAAGACGCCCCCGTCCT
CACCGCCGGCGAATAAAAAGTTCCGTGATATCGAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig140:8923..12357-

>mRNA_H-canaliculatus_F_contig140.3173.1 ID=mRNA_H-canaliculatus_F_contig140.3173.1|Name=mRNA_H-canaliculatus_F_contig140.3173.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1716bp|location=Sequence derived from alignment at H-canaliculatus_F_contig140:8923..12357- (Hapterophycus canaliculatus Oshoro5f female)
GCTGCGGTTGTTCAGCCCAAGAAGGCTGCGGTTGTTCAGCCCAAGAAGGA
TTACGAGGCCCGCACAGCTCGAGCCGCGAAGAGCAACATCTTGCACAGCT
TCGCCGACGGACGCCAGCTGGGGGCCACCGGGCGCACGACGCAGGATTAC
GAGGCCCGCACAGCTCGAGCCGCGAAGAGCAACATCTTGCACAGCTTCGC
CGACGGACGCCAGCTGGGGGCCACCGGGCGCACGACGCAGGCCCTGGTGC
TGGACATGCTGTCCCACCTGATGGACATCTTGGCACCCACCCTTCGGCCG
GCCCTGGTGCTGGACATGCTGTCCCACCTGATGGACATCTTGGCACCCAC
CCTTCGGCCGCTTAACCCGGACCTCCTCAGCCCGCAGGAGCGAGCGCGGT
TCCGCGGACTCGTCGGCACCCTCCTCTCGTGCGGGCTCACGTTCGCACCG
CAGTCGGCGGCAACGCCAAGTCCCTCTACGCCGTCCACCGCCCTGGCTCC
GTACGGGGCGGCGGCGGGGGCACAGGAATTCGCCCTCGAACCTGCGATCG
ATCAGCTTAACCCGGACCTCCTCAGCCCGCAGGAGCGAGCGCGGTTCCGC
GGACTCGTCGGCACCCTCCTCTCGTGCGGGCTCACGTTCGCACCGCAGTC
GGCGGCAACGCCAAGTCCCTCTACGCCGTCCACCGCCCTGGCTCCGTACG
GGGCGGCGGCGGGGGCACAGGAATTCGCCCTCGAACCTGCGATCGATCAG
CTTCTGATGTACGAGGGGTACGACTTCGCACACCCTCGGTTGGCCCCCCC
GCTCCGACCTATGGTGGCGCACGAGGTCAACCTGGAAGGCATGCGCCAGG
CAGAGCTTCTGATGTACGAGGGGTACGACTTCGCACACCCTCGGTTGGCC
CCCCCGCTCCGACCTATGGTGGCGCACGAGGTCAACCTGGAAGGCATGCG
CCAGGCAGAGGCGTCCAAGCTGGCACACCGCGAGGATGCCGCCAAAGCTG
GTAAGAACGCAGCGGCGGACCCATTCACCGCCGCTGCCTCCACGGCACGA
AAAGCAGCGTCGCCGTTCGTTGTCGGTGGCGATGCGACGGCAGCAGCAGC
GCAGGCAGGATCAGCACCAGCCACCGCAGCTGGGAGCGACAGAAGGAATG
TTGTTGGTGACAACAAAGCTGGCGGTGATGGTGGAGGAGCCATCGAAGAT
GGAAGAGCTAAAGCAGCGGCAGAAACGGCGGCGGAACGAAAAGGGGAAGC
GGCGGCGACGGCGGCGGCGGCGGCGGCGTCCAAGCTGGCACACCGCGAGG
ATGCCGCCAAAGCTGGTAAGAACGCAGCGGCGGACCCATTCACCGCCGCT
GCCTCCACGGCACGAAAAGCAGCGTCGCCGTTCGTTGTCGGTGGCGATGC
GACGGCAGCAGCAGCGCAGGCAGGATCAGCACCAGCCACCGCAGCTGGGA
GCGACAGAAGGAATGTTGTTGGTGACAACAAAGCTGGCGGTGATGGTGGA
GGAGCCATCGAAGATGGAAGAGCTAAAGCAGCGGCAGAAACGGCGGCGGA
ACGAAAAGGGGAAGCGGCGGCGACGGCGGCGGCGGCGGCGAAGGCGAACA
GCAAGACGCCCCCGTCCTCACCGCCGGCGAATAAAAAGTTCCGTGATATC
GAGAAGGCGAACAGCAAGACGCCCCCGTCCTCACCGCCGGCGAATAAAAA
GTTCCGTGATATCGAG
back to top