mRNA_H-canaliculatus_F_contig14.3170.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14.3170.1
Unique NamemRNA_H-canaliculatus_F_contig14.3170.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14.3170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14contigH-canaliculatus_F_contig14:90072..90620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size514
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14.3170.1prot_H-canaliculatus_F_contig14.3170.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14 90175..90470 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.8242998-UTR-H-canaliculatus_F_contig14:90071..901741622929144.8242998-UTR-H-canaliculatus_F_contig14:90071..90174Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14 90072..90174 -
1696845694.5975332-UTR-H-canaliculatus_F_contig14:90071..901741696845694.5975332-UTR-H-canaliculatus_F_contig14:90071..90174Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14 90072..90174 -
1622929144.8727562-UTR-H-canaliculatus_F_contig14:90470..906201622929144.8727562-UTR-H-canaliculatus_F_contig14:90470..90620Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14 90471..90620 -
1696845694.630527-UTR-H-canaliculatus_F_contig14:90470..906201696845694.630527-UTR-H-canaliculatus_F_contig14:90470..90620Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14 90471..90620 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.84004-CDS-H-canaliculatus_F_contig14:90174..903611622929144.84004-CDS-H-canaliculatus_F_contig14:90174..90361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14 90175..90361 -
1696845694.6079543-CDS-H-canaliculatus_F_contig14:90174..903611696845694.6079543-CDS-H-canaliculatus_F_contig14:90174..90361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14 90175..90361 -
1622929144.858187-CDS-H-canaliculatus_F_contig14:90396..904701622929144.858187-CDS-H-canaliculatus_F_contig14:90396..90470Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14 90397..90470 -
1696845694.619311-CDS-H-canaliculatus_F_contig14:90396..904701696845694.619311-CDS-H-canaliculatus_F_contig14:90396..90470Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14 90397..90470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14.3170.1

>prot_H-canaliculatus_F_contig14.3170.1 ID=prot_H-canaliculatus_F_contig14.3170.1|Name=mRNA_H-canaliculatus_F_contig14.3170.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=87bp
MRETASGLTLIKSESSENMSETASGRDVTDPSYNDIKRRRTHSSFKYNNP
KSVDRHDEPTKARCPEKTLHCSPFLGIDCIKVQTKP*
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mRNA from alignment at H-canaliculatus_F_contig14:90072..90620-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14.3170.1 ID=mRNA_H-canaliculatus_F_contig14.3170.1|Name=mRNA_H-canaliculatus_F_contig14.3170.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=549bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14:90072..90620- (Hapterophycus canaliculatus Oshoro5f female)
AGAAGAACACACAGCAGTTTCAAATGCAACAACCCAAATTCAGCAGGAGA
GCGTGTTGACACGAGCAGGCCAAAAAGACGACGAACAGTCCAACAGCCGG
CGGTGAGAAAACGTCACTGCTGTGCATGGGTGCTCGAGTCATCAGAGACC
ATGAGAGAGACTGCGTCAGGGTTGACTCTGATCAAGTCTGAGTCATCAGA
GAACATGAGTGAGACTGCGTCAGGGTTGACTCTGATCAAGTCTGGCATCT
CAGAAGAAGACGCGACGTGACCGACCCATCATACAATGACATAAAGAGAA
GAAGAACACACAGCAGTTTCAAATACAACAACCCAAAATCAGTAGATAGG
CACGATGAGCCGACTAAAGCCAGGTGTCCGGAAAAAACATTGCACTGTTC
GCCCTTTCTCGGTATAGACTGTATCAAGGTACAAACGAAGCCGTGATGAT
GTATTGCACCATGAAAACTCTAAGAGTTGACTTTTATACAACCGACCTAG
AGCAACGCAGCACGAACGGCGGCTTATACTCAGCCGACGAAAGGAAAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14:90072..90620-

>mRNA_H-canaliculatus_F_contig14.3170.1 ID=mRNA_H-canaliculatus_F_contig14.3170.1|Name=mRNA_H-canaliculatus_F_contig14.3170.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=522bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14:90072..90620- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGAGAGACTGCGTCAGGGTTGACTCTGATCAAGTCTGAGTCATCAGA
GAACATGAGTGAGACTGCGTCAGGATGAGAGAGACTGCGTCAGGGTTGAC
TCTGATCAAGTCTGAGTCATCAGAGAACATGAGTGAGACTGCGTCAGGAC
GCGACGTGACCGACCCATCATACAATGACATAAAGAGAAGAAGAACACAC
AGCAGTTTCAAATACAACAACCCAAAATCAGTAGATAGGCACGATGAGCC
GACTAAAGCCAGGTGTCCGGAAAAAACATTGCACTGTTCGCCCTTTCTCG
GTATAGACTGTATCAAGGTACAAACGAAGCCGTGAACGCGACGTGACCGA
CCCATCATACAATGACATAAAGAGAAGAAGAACACACAGCAGTTTCAAAT
ACAACAACCCAAAATCAGTAGATAGGCACGATGAGCCGACTAAAGCCAGG
TGTCCGGAAAAAACATTGCACTGTTCGCCCTTTCTCGGTATAGACTGTAT
CAAGGTACAAACGAAGCCGTGA
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