mRNA_H-canaliculatus_F_contig13998.3163.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13998.3163.1
Unique NamemRNA_H-canaliculatus_F_contig13998.3163.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13998.3163.1 vs. uniprot
Match: D8LPU9_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU9_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 8.110e-34
Identity = 67/82 (81.71%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:    1 QILQLGFIRKHIQNFLADIASRENHKIGEGTMVLKAAAVNMLADAERSSSRPDYSGRGEIVGPGSNQDMLALKRQMEELGLQ 246
            QILQLGFI+KHI NFLADI SRE+HK+GEGTMVLKAAAVNMLADAE  SS P Y   G+I G GSNQDMLALKRQMEELGLQ
Sbjct:  253 QILQLGFIKKHIHNFLADIVSRESHKMGEGTMVLKAAAVNMLADAEGPSSAPGYDDSGDIAGLGSNQDMLALKRQMEELGLQ 334
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BLAST of mRNA_H-canaliculatus_F_contig13998.3163.1 vs. uniprot
Match: A0A6H5K9D4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D4_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.590e-18
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 QILQLGFIRKHIQNFLADIASRENHKIGEGTMVLKAAAVNMLADAE 138
            QILQLGFI+KHI NFLADI SRE+HK+GEGTMVLKAAAVNMLADAE
Sbjct:  199 QILQLGFIKKHIHNFLADIVSRESHKMGEGTMVLKAAAVNMLADAE 244
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BLAST of mRNA_H-canaliculatus_F_contig13998.3163.1 vs. uniprot
Match: A0A836CGE2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGE2_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.630e-17
Identity = 45/82 (54.88%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:    1 QILQLGFIRKHIQNFLADIASRENHKIGEGTMVLKAAAVNMLADAERSSSRPDYSGRGEIVGPGSNQDMLALKRQMEELGLQ 246
            QIL+ GFI++HI NFLADI SRE  +IGEGTMV+KAAAVN+             +G G ++    N+DM AL+ QMEELGLQ
Sbjct:  253 QILRHGFIKRHIHNFLADIMSREQSQIGEGTMVVKAAAVNLAGXXXXXXXSRSSTGSGAVLS--RNRDMQALQEQMEELGLQ 332
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BLAST of mRNA_H-canaliculatus_F_contig13998.3163.1 vs. uniprot
Match: A0A7S2MCI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MCI1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.020e-8
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    4 ILQLGFIRKHIQNFLADIASRENHKIGEGTMVLKAAAVNMLADAERSS 147
            IL   FI++HI NFL DI SR   +IG+GTMVL+AAAVN+ A  ++SS
Sbjct:   57 ILTKTFIKQHIHNFLKDIVSRPVQRIGDGTMVLRAAAVNVAAGGQKSS 104
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BLAST of mRNA_H-canaliculatus_F_contig13998.3163.1 vs. uniprot
Match: F0YAV9_AURAN (Protein kinase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAV9_AURAN)

HSP 1 Score: 56.6 bits (135), Expect = 1.910e-7
Identity = 28/78 (35.90%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:    4 ILQLGFIRKHIQNFLADIASRENHKIGEGTMVLKAAAVNMLADAERSSSRPDYSGRGEIVGPGSNQDMLALKRQMEEL 237
            IL+  F++KHI++FL DIA+R+  KIG+GTM +KAAA+ ++ D   + +      R        + D+ +L+ Q++ L
Sbjct:  169 ILRKPFVKKHIKDFLTDIANRDAGKIGDGTMAVKAAALCVVTDPANAVAGMGADARAAHARAAGSADVSSLRSQLDSL 246
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BLAST of mRNA_H-canaliculatus_F_contig13998.3163.1 vs. uniprot
Match: A0A7S1UB12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UB12_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 8.510e-7
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:    4 ILQLGFIRKHIQNFLADIASRENHKIGEGTMVLKAAAVNMLADAERSSSRPDYSGRGEIVGPGSNQDMLALKRQMEELGL 243
            IL+L FI+K IQ+F +DI SR + +IG+GT +++AAA+ M+         P  +  G ++    + D+ +L +Q+  LGL
Sbjct:  254 ILKLPFIKKQIQHFFSDIVSRPSAQIGDGTQIVRAAALQMV---------PGQAANGNVI---DSPDVNSLTKQLNHLGL 321
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13998.3163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LPU9_ECTSI8.110e-3481.71Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6H5K9D4_9PHAE3.590e-1889.13Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A836CGE2_9STRA5.630e-1754.88Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S2MCI1_9STRA2.020e-858.33Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0YAV9_AURAN1.910e-735.90Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A7S1UB12_9STRA8.510e-736.25Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13998contigH-canaliculatus_F_contig13998:1553..2183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size247
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.7640114-CDS-H-canaliculatus_F_contig13998:1553..16611622929144.7640114-CDS-H-canaliculatus_F_contig13998:1553..1661Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13998 1554..1661 -
1696845694.5767746-CDS-H-canaliculatus_F_contig13998:1553..16611696845694.5767746-CDS-H-canaliculatus_F_contig13998:1553..1661Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13998 1554..1661 -
1622929144.779223-CDS-H-canaliculatus_F_contig13998:2045..21831622929144.779223-CDS-H-canaliculatus_F_contig13998:2045..2183Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13998 2046..2183 -
1696845694.5885048-CDS-H-canaliculatus_F_contig13998:2045..21831696845694.5885048-CDS-H-canaliculatus_F_contig13998:2045..2183Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13998 2046..2183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13998.3163.1prot_H-canaliculatus_F_contig13998.3163.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13998 1554..2183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13998.3163.1

>prot_H-canaliculatus_F_contig13998.3163.1 ID=prot_H-canaliculatus_F_contig13998.3163.1|Name=mRNA_H-canaliculatus_F_contig13998.3163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=82bp
QILQLGFIRKHIQNFLADIASRENHKIGEGTMVLKAAAVNMLADAERSSS
RPDYSGRGEIVGPGSNQDMLALKRQMEELGLQ
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mRNA from alignment at H-canaliculatus_F_contig13998:1553..2183-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13998.3163.1 ID=mRNA_H-canaliculatus_F_contig13998.3163.1|Name=mRNA_H-canaliculatus_F_contig13998.3163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=631bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13998:1553..2183- (Hapterophycus canaliculatus Oshoro5f female)
CAGATTCTTCAGCTGGGATTCATCAGGAAGCATATTCAGAATTTTCTGGC
GGACATCGCGTCGAGAGAGAATCACAAGATAGGGGAGGGTACCATGGTGC
TGAAGGCAGCAGCCGTTAACATGCTCGCAGATGCCGAGGTACGTAGGTGT
ATAATTAGAATGGCATGCCTGCCATTACGTCGCTCTCATGACGTCGATGT
CCCTTTAATCCAGCTTTATGCGTCCAAAACAGCTCCCCGACGAGTAGGGA
CTTCCAGAGGTTGCATAGCCTGATTGAAGTATCTGACTTGAGGTTGCACA
CAAACACTCGCATGTACCTTCCAGTTCGATGGTTCATCGTTGACTTTTAT
ATATTTCCTTTTCTAAGCTAGGGTCTGCACATTCTGTGCATTTTGCATTC
TGAGCATCAGAATCTATAGAGTCCTTTCGCTGGCAACGACTCATCGAACC
GCGCTACCTTTTGCATTTGCCCCTTTTGGTTTTCTCTTATGTGGTGGTAT
GTGGCGCGGTGTACTGTGATAGCGCTCGTCGAGCAGACCTGACTATAGTG
GACGTGGGGAAATCGTGGGGCCAGGATCAAACCAAGACATGCTGGCCCTG
AAGAGGCAAATGGAAGAGTTGGGTCTCCAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13998:1553..2183-

>mRNA_H-canaliculatus_F_contig13998.3163.1 ID=mRNA_H-canaliculatus_F_contig13998.3163.1|Name=mRNA_H-canaliculatus_F_contig13998.3163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=492bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13998:1553..2183- (Hapterophycus canaliculatus Oshoro5f female)
CAGATTCTTCAGCTGGGATTCATCAGGAAGCATATTCAGAATTTTCTGGC
GGACATCGCGTCGAGAGAGAATCACAAGATAGGGGAGGGTACCATGGTGC
TGAAGGCAGCAGCCGTTAACATGCTCGCAGATGCCGAGCAGATTCTTCAG
CTGGGATTCATCAGGAAGCATATTCAGAATTTTCTGGCGGACATCGCGTC
GAGAGAGAATCACAAGATAGGGGAGGGTACCATGGTGCTGAAGGCAGCAG
CCGTTAACATGCTCGCAGATGCCGAGCGCTCGTCGAGCAGACCTGACTAT
AGTGGACGTGGGGAAATCGTGGGGCCAGGATCAAACCAAGACATGCTGGC
CCTGAAGAGGCAAATGGAAGAGTTGGGTCTCCAGCGCTCGTCGAGCAGAC
CTGACTATAGTGGACGTGGGGAAATCGTGGGGCCAGGATCAAACCAAGAC
ATGCTGGCCCTGAAGAGGCAAATGGAAGAGTTGGGTCTCCAG
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