mRNA_H-canaliculatus_F_contig13996.3162.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13996.3162.1
Unique NamemRNA_H-canaliculatus_F_contig13996.3162.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13996.3162.1 vs. uniprot
Match: D7FS09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS09_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 9.020e-8
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 2 
Query:  116 PAPEPEVGRSERD**NILEGI*-----ANLVLRRTAPEQE---VDGRQAAL 244
            PAPEPEVGR ERD  NILEG+      A+L+LRRTAPE     +DGRQAAL
Sbjct:  110 PAPEPEVGRLERDRANILEGVRKGYHHAHLLLRRTAPEHPTATMDGRQAAL 160
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BLAST of mRNA_H-canaliculatus_F_contig13996.3162.1 vs. uniprot
Match: A0A6H5KCB2_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCB2_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.280e-6
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:  116 PAPEPEVGRSERD**NILEGI*-----ANLVLRRTAPEQE---VDGRQAAL 244
            PAPEPEVGR ERD   ILEG+      A+L+LRRTAPE     +DGRQAAL
Sbjct:  351 PAPEPEVGRLERDRAKILEGVRKGYHHAHLLLRRTAPEHPTATMDGRQAAL 401
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13996.3162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS09_ECTSI9.020e-864.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCB2_9PHAE1.280e-662.75PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13996contigH-canaliculatus_F_contig13996:1097..1527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionAcyl transferase/acyl hydrolase/lysophospholipase
Ec32 orthologEc-12_006930.1
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.7080865-CDS-H-canaliculatus_F_contig13996:1096..12331622929144.7080865-CDS-H-canaliculatus_F_contig13996:1096..1233Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13996 1097..1233 -
1696845694.555577-CDS-H-canaliculatus_F_contig13996:1096..12331696845694.555577-CDS-H-canaliculatus_F_contig13996:1096..1233Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13996 1097..1233 -
1622929144.7198846-CDS-H-canaliculatus_F_contig13996:1409..15271622929144.7198846-CDS-H-canaliculatus_F_contig13996:1409..1527Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13996 1410..1527 -
1696845694.5670948-CDS-H-canaliculatus_F_contig13996:1409..15271696845694.5670948-CDS-H-canaliculatus_F_contig13996:1409..1527Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13996 1410..1527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13996.3162.1prot_H-canaliculatus_F_contig13996.3162.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13996 1097..1527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13996.3162.1

>prot_H-canaliculatus_F_contig13996.3162.1 ID=prot_H-canaliculatus_F_contig13996.3162.1|Name=mRNA_H-canaliculatus_F_contig13996.3162.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=85bp
YSFFKSGDPEELYAESVSTLNEVATAKMEDGPLSYPELTGAGAGGRPIGE
GLMKHSGRDLSQPGAPPDCTGAGGGRSTSGTPGV*
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mRNA from alignment at H-canaliculatus_F_contig13996:1097..1527-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13996.3162.1 ID=mRNA_H-canaliculatus_F_contig13996.3162.1|Name=mRNA_H-canaliculatus_F_contig13996.3162.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=431bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13996:1097..1527- (Hapterophycus canaliculatus Oshoro5f female)
TACTCATTCTTCAAGAGCGGTGACCCCGAGGAGCTGTACGCGGAGTCGGT
GTCGACGCTCAACGAGGTTGCGACGGCGAAGATGGAGGACGGACCGCTCT
CATACCCTGAGCTCACCGGTGAGAGGGAATTATTTTGTTGTTGGATGCTA
TTGGCGGCGAGCGTTAAGAGGTCTTGCGAGCCCCTCCGGGCTCTCGGCCG
ACATTCAAGTGGCACTCCGATGCTGCAACCTCGGAAGATCCAACCTCCGA
TATTTGCCGTATCTCCATCGATCTTGGTCAACGACCGCATGCAGGCGCCG
GAGCCGGAGGTCGGCCGATCGGAGAGGGATTGATGAAACATTCTGGAAGG
GATCTAAGCCAACCTGGTGCTCCGCCGGACTGCACCGGAGCAGGAGGTGG
ACGGTCGACAAGCGGCACTCCAGGTGTGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13996:1097..1527-

>mRNA_H-canaliculatus_F_contig13996.3162.1 ID=mRNA_H-canaliculatus_F_contig13996.3162.1|Name=mRNA_H-canaliculatus_F_contig13996.3162.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=510bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13996:1097..1527- (Hapterophycus canaliculatus Oshoro5f female)
TACTCATTCTTCAAGAGCGGTGACCCCGAGGAGCTGTACGCGGAGTCGGT
GTCGACGCTCAACGAGGTTGCGACGGCGAAGATGGAGGACGGACCGCTCT
CATACCCTGAGCTCACCGTACTCATTCTTCAAGAGCGGTGACCCCGAGGA
GCTGTACGCGGAGTCGGTGTCGACGCTCAACGAGGTTGCGACGGCGAAGA
TGGAGGACGGACCGCTCTCATACCCTGAGCTCACCGGCGCCGGAGCCGGA
GGTCGGCCGATCGGAGAGGGATTGATGAAACATTCTGGAAGGGATCTAAG
CCAACCTGGTGCTCCGCCGGACTGCACCGGAGCAGGAGGTGGACGGTCGA
CAAGCGGCACTCCAGGTGTGTAGGCGCCGGAGCCGGAGGTCGGCCGATCG
GAGAGGGATTGATGAAACATTCTGGAAGGGATCTAAGCCAACCTGGTGCT
CCGCCGGACTGCACCGGAGCAGGAGGTGGACGGTCGACAAGCGGCACTCC
AGGTGTGTAG
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