mRNA_H-canaliculatus_F_contig13988.3156.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13988.3156.1
Unique NamemRNA_H-canaliculatus_F_contig13988.3156.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13988.3156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13988contigH-canaliculatus_F_contig13988:746..1406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size661
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13988.3156.1prot_H-canaliculatus_F_contig13988.3156.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13988 984..1340 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929143.5981874-UTR-H-canaliculatus_F_contig13988:745..9831622929143.5981874-UTR-H-canaliculatus_F_contig13988:745..983Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13988 746..983 +
1696845694.2198153-UTR-H-canaliculatus_F_contig13988:745..9831696845694.2198153-UTR-H-canaliculatus_F_contig13988:745..983Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13988 746..983 +
1622929143.6926687-UTR-H-canaliculatus_F_contig13988:1340..14061622929143.6926687-UTR-H-canaliculatus_F_contig13988:1340..1406Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13988 1341..1406 +
1696845694.2386427-UTR-H-canaliculatus_F_contig13988:1340..14061696845694.2386427-UTR-H-canaliculatus_F_contig13988:1340..1406Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13988 1341..1406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929143.6126938-CDS-H-canaliculatus_F_contig13988:983..13401622929143.6126938-CDS-H-canaliculatus_F_contig13988:983..1340Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13988 984..1340 +
1696845694.2294574-CDS-H-canaliculatus_F_contig13988:983..13401696845694.2294574-CDS-H-canaliculatus_F_contig13988:983..1340Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13988 984..1340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13988.3156.1

>prot_H-canaliculatus_F_contig13988.3156.1 ID=prot_H-canaliculatus_F_contig13988.3156.1|Name=mRNA_H-canaliculatus_F_contig13988.3156.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=119bp
MPRQRLYEMPASADVHIGGQHPTRVFSHKRPSAPSSPLPPPSLPWRTSFY
GDCVPSSTVIDDSRLLCRMICSQGWVANPPQTCRRPRARRSPDLCRKLPD
YGKALRRGLWGETFAVAH*
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mRNA from alignment at H-canaliculatus_F_contig13988:746..1406+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13988.3156.1 ID=mRNA_H-canaliculatus_F_contig13988.3156.1|Name=mRNA_H-canaliculatus_F_contig13988.3156.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=661bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13988:746..1406+ (Hapterophycus canaliculatus Oshoro5f female)
GCGACGTCGGGAGGGGGGCAGCGAGAGACAAGGGGAGGTAGTTTCGCTCC
GTGGTCACAAGTATTTCCCCCGTCCGTTTGGCCGGAAATCGAGCATCATC
GCGACGAGATTGCGCTGTCACCGCAATCACGCGCGCCCGCTCTCCCGCCC
TCGTGCACTTCTGCCTGGCTACACTCCGTTTGTACGAGACCCAACTTTTC
CTCCCGACTTTCGCTTATTTCTCGAGGGAAGGTAGCATATGCCCCGACAA
CGTTTGTACGAAATGCCGGCCTCTGCTGATGTACATATTGGTGGGCAGCA
TCCGACGCGGGTCTTCTCGCACAAGAGGCCTTCCGCTCCCTCCTCCCCCC
TCCCTCCTCCCTCCCTCCCTTGGCGAACTTCCTTCTACGGCGATTGCGTT
CCGAGCTCCACGGTTATCGACGACTCAAGACTTTTGTGCCGTATGATTTG
TAGTCAAGGTTGGGTCGCAAACCCGCCGCAAACCTGCCGTCGCCCCCGAG
CGAGAAGGAGCCCCGATTTGTGTCGAAAGCTCCCAGATTATGGGAAAGCG
CTCAGGCGAGGGTTATGGGGAGAGACCTTTGCCGTTGCGCACTGAATCTA
CGCCTTGAGTTTCTGGCAGGTGCATCCCTCGTGTCCTTCCTGGCCGTGAG
TTGTACACAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13988:746..1406+

>mRNA_H-canaliculatus_F_contig13988.3156.1 ID=mRNA_H-canaliculatus_F_contig13988.3156.1|Name=mRNA_H-canaliculatus_F_contig13988.3156.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=714bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13988:746..1406+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCCGACAACGTTTGTACGAAATGCCGGCCTCTGCTGATGTACATAT
TGGTGGGCAGCATCCGACGCGGGTCTTCTCGCACAAGAGGCCTTCCGCTC
CCTCCTCCCCCCTCCCTCCTCCCTCCCTCCCTTGGCGAACTTCCTTCTAC
GGCGATTGCGTTCCGAGCTCCACGGTTATCGACGACTCAAGACTTTTGTG
CCGTATGATTTGTAGTCAAGGTTGGGTCGCAAACCCGCCGCAAACCTGCC
GTCGCCCCCGAGCGAGAAGGAGCCCCGATTTGTGTCGAAAGCTCCCAGAT
TATGGGAAAGCGCTCAGGCGAGGGTTATGGGGAGAGACCTTTGCCGTTGC
GCACTGAATGCCCCGACAACGTTTGTACGAAATGCCGGCCTCTGCTGATG
TACATATTGGTGGGCAGCATCCGACGCGGGTCTTCTCGCACAAGAGGCCT
TCCGCTCCCTCCTCCCCCCTCCCTCCTCCCTCCCTCCCTTGGCGAACTTC
CTTCTACGGCGATTGCGTTCCGAGCTCCACGGTTATCGACGACTCAAGAC
TTTTGTGCCGTATGATTTGTAGTCAAGGTTGGGTCGCAAACCCGCCGCAA
ACCTGCCGTCGCCCCCGAGCGAGAAGGAGCCCCGATTTGTGTCGAAAGCT
CCCAGATTATGGGAAAGCGCTCAGGCGAGGGTTATGGGGAGAGACCTTTG
CCGTTGCGCACTGA
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