mRNA_H-canaliculatus_F_contig1398.3153.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1398.3153.1 vs. uniprot
Match: A0A6H5KWI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWI4_9PHAE) HSP 1 Score: 553 bits (1426), Expect = 7.760e-185 Identity = 480/786 (61.07%), Postives = 534/786 (67.94%), Query Frame = 1
Query: 1 MRPRFRDTCGA--LLGCCLLVAL--LSALPGGEAFLSPASVRERSASSLKGGLSASKVQKHRRPSASRGVERRMAGNGGEELQTGETAPFDEDENAS------------------------------SSSSIASIPARRGRFHRQALEAGS---------EAAGEVLSEVGE---------------------ALDGSEILATDSGSEMEGGVGGMTATTDGVAVASTPQGVNKAGSGGVSSVELIKTEILENKEVIAVVVAGVAGSRYLLVKAGGKPGRGSGRGRRRRGGGKGVSPKSPFAGIGQPRVSPEVAAADLKKKADSLKSIDFDVDEDLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSTF-----YSKKPEKSKRKGAPILNLFKRDSGPQRATTMADALAAETADVAVFRQALAAVLARSAPPGAFNVKEPSLLEEVSFTPEDFEGEAGVKAAQTSRVSALSQLMERAGLSLQEGAHVVADVVNAMVVKLTDXXXXXXXXXXXXXXXXALLKYMDGAGELFVALCPGIALDPQIKYNGTYKRGKLEKVFEAAAKSTLKSMGDEGQMVSLDRLQDLFSIKKSKADSITQKIMMDLMMKMMSEGDGEGGDAENLEKMMAAXXXXXXXXXXXXXXXXGARSPEDHKKEVEALKAMVDSGDCPKEEVDALRKMYTDAGMDIDTLVNDPMMESSMDADAKEVVVLLRKLLALWPKK 2151
MRP FRD G L G CL+V + LS PGGEAFL PA+V+ G ++ K+ + R +RG+ AG ++ G DEN+S S+ + S A GR R A E S A GEV+ VGE AL+G E ++GSE VGG+ TT +T + +A GGVS+V ++K ++ENKEV+AVVVAGV GSRYLLV+ GGK +PKSP AGIGQPRVSPEVAAADLKK+ADSLKS +FDVD DLF XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YS KPEKSKRK PIL+LFKRD+GPQR+TTM +AL+ E+ +VA FR+ LAAVLA SAP G F+V+EP+LL E + PEDFEGEAGVKAA SR+SAL +LME AGLSL++GA VVADVVNAMVVKLTD ALLKYMD AG LFV LCPGIALDPQIKYNGTYKRGKLEKVFEAAAKSTLKSMGDEGQM+SLDRLQDLFSIKKSKADSITQKIMMDLMMKMMSEG GE GDAE LEKMMAA XXXXXXX RSPEDHK+EVEALK MV+SGDCPKEEVDALRKMYTDAG+DIDTLVNDP ME+SMDADAKEVVVLLRKLL LWPKK
Sbjct: 1 MRPAFRDAMGGGVLGGTCLMVIVMVLSVAPGGEAFLHPAAVQRH------GAAASGKMLQQRPAVKTRGIGSMTAG-----VEEGMLDVASRDENSSVTRSTPGPLLRVRSLFGRKAATAAAVSALVSAGAPGSAEALFGRGGRSAPEMPSVPALEQQLETAVGEVVEGVGEIASAVDKXXXXXXXXXXXXEEALEGLET--PEAGSEGGDAVGGLVTTTP-----ATEEDQGRA-VGGVSTVGIVKDLVVENKEVVAVVVAGVIGSRYLLVQRGGKXXXXXXXXXXXXXXXXXXAPKSPLAGIGQPRVSPEVAAADLKKRADSLKSANFDVDLDLFGDAVADLPARPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSIKPEKSKRK--PILSLFKRDTGPQRSTTMQEALSDESPNVADFRRGLAAVLAESAPKGEFDVEEPTLLAEATIVPEDFEGEAGVKAAAASRMSALKELMETAGLSLEQGAEVVADVVNAMVVKLTDAAVSSKGVDSTAAASNALLKYMDEAGALFVTLCPGIALDPQIKYNGTYKRGKLEKVFEAAAKSTLKSMGDEGQMMSLDRLQDLFSIKKSKADSITQKIMMDLMMKMMSEGGGEDGDAEGLEKMMAAMGGMEGXXXXXXXG--AGRSPEDHKREVEALKQMVESGDCPKEEVDALRKMYTDAGLDIDTLVNDPNMEASMDADAKEVVVLLRKLLDLWPKK 763
BLAST of mRNA_H-canaliculatus_F_contig1398.3153.1 vs. uniprot
Match: A0A835Z1E0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E0_9STRA) HSP 1 Score: 162 bits (410), Expect = 7.990e-38 Identity = 132/357 (36.97%), Postives = 191/357 (53.50%), Query Frame = 1
Query: 1096 PPSTFYSKK-PEKSKRK-GAPILNLFKRDSGPQRATTMADALAA-ETADVAVFRQALAAVLARSAPPGAFNVKEPSLLEEVSFTPEDFEGEAGVKAAQTSRVSALSQLMERAGLSLQEGAHVVADVVNAMVVKLTDXXXXXXXXXXXXXXXXA-LLKYMDGAGELFVALCPGIALDPQIKYNGTYKRGKLEKVFEAAAKSTLKSMGDEGQMVSLDRLQDLFSIKKSKADSITQKIMMDLMMKMMSEGDGEGGDAENLEKMMAAXXXXXXXXXXXXXXXXGARSPEDHK--KEVEALKAMVDSGDCPKEEVDALRKMYTDAGMDIDTLVNDPMM-ESSMDADAKEVVVLLRKLLALWP 2145
PPS ++ PE K+K G + LFK+ + R TT+ DA++A E + F QALA L+ APPG+F +P+ L + EG L +L+ +G + + A +ADVVNAMVV LTD + LL YMD AG F A+CPG+ALDP ++YNG K+ +LE+++E ++ + + +RL+D+ +IK+SKA S+ QK++M+++ KMM EG GD XXXXX G PE + ++EA KAMV G+ ++EV LRKMY D GMDID +V + ES+MD +AKE+ LLR++L P
Sbjct: 227 PPSAMEAQAAPEPPKKKLGLGLGGLFKKGAASNRPTTIGDAISAQEGGGLEGFSQALAGYLSHFAPPGSF-APDPTFLRDGELDRAGAEG-------------TLLELVSSSGATSLQVADAIADVVNAMVVGLTDAAVAAIKDEDRCRQALSDLLLYMDNAGGTFAAVCPGVALDPPLRYNGAAKKRQLEELYENFTRAMVTDQSAD-MSARQERLRDMLNIKESKARSLEQKVLMEVVQKMMKEG----GDXXXXXXXXXXXXXXXE----------GGGMPEGPEVAAQLEAFKAMVKDGNVSRDEVTELRKMYKDMGMDIDQMVAESAAAESTMDREAKELYSLLRQMLEQHP 554
BLAST of mRNA_H-canaliculatus_F_contig1398.3153.1 vs. uniprot
Match: H6WBA5_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA5_VAULI) HSP 1 Score: 118 bits (296), Expect = 6.830e-25 Identity = 78/244 (31.97%), Postives = 125/244 (51.23%), Query Frame = 1
Query: 1444 AHVVADVVNAMVVKLTDXXXXXXXXXXXXXXXX--ALLKYMDGAGELFVALCPGIALDPQIKYNGTYKRGKLEKVFEAAAKSTLKSMGDEGQMVSLDRLQDLFSIKKSKADSITQKIMMDLMMKMMSEGDGEGGDAENLEKMMAAXXXXXXXXXXXXXXXXGARSPE-----DHKKEVEALKAMVDSGDCPKEEVDALRKMYTDAGMDIDTLVNDPM-MESSMDADAKEVVVLLRKLLALWPKK 2151
A +A + N M+ +L D L+++M +G +F A+CPGI LDP ++YNG K+ +LE+++ A+ +++ S E M ++DL IK+ KA +I QK MMD + M+ +G G+G E + ++ G PE + + ++E+ K +V G +EEV LRKMY + GMDID LV + E MDA +E+ LLR++L+ +P K
Sbjct: 185 AEAIACIANPMINELVDAAVAANQKSPPACEEALMGLVRFMKVSGSVFEAVCPGIVLDPPLRYNGGSKKKQLEEIY-ASLSASISSENSEELMSFQKEIRDLLGIKEFKAKAIEQKAMMDALQNMVKDGGGDGSSQEQMAALLQ------------NIGANGGPEPEMPSGPEMEAQLESFKNLVKGGQVTEEEVKELRKMYKEMGMDIDKLVKESEGNEGMMDAQGRELFDLLRQMLSQYPLK 415 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1398.3153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1398.3153.1 >prot_H-canaliculatus_F_contig1398.3153.1 ID=prot_H-canaliculatus_F_contig1398.3153.1|Name=mRNA_H-canaliculatus_F_contig1398.3153.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=718bp MRPRFRDTCGALLGCCLLVALLSALPGGEAFLSPASVRERSASSLKGGLSback to top mRNA from alignment at H-canaliculatus_F_contig1398:13602..25885+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1398.3153.1 ID=mRNA_H-canaliculatus_F_contig1398.3153.1|Name=mRNA_H-canaliculatus_F_contig1398.3153.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=12284bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1398:13602..25885+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1398:13602..25885+ >mRNA_H-canaliculatus_F_contig1398.3153.1 ID=mRNA_H-canaliculatus_F_contig1398.3153.1|Name=mRNA_H-canaliculatus_F_contig1398.3153.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4308bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1398:13602..25885+ (Hapterophycus canaliculatus Oshoro5f female)back to top |