mRNA_H-canaliculatus_F_contig13955.3137.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13955.3137.1
Unique NamemRNA_H-canaliculatus_F_contig13955.3137.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13955.3137.1 vs. uniprot
Match: D7FYK0_ECTSI (SPX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYK0_ECTSI)

HSP 1 Score: 416 bits (1068), Expect = 1.810e-139
Identity = 248/370 (67.03%), Postives = 261/370 (70.54%), Query Frame = 1 
Query:    1 RFLEAKAGATVLTSEARDLVQFVDMNMHGFRKVLKKFDKWASGVRGREYFTALVQTQPWINGDRAHGILRMASAMSEHLRSLRPALALGPAAGGPCWADRIVYSVGTFDRPRLSAGADVDGGPLSTMSITPPGSAATSPSGRRGL----------FGYGGDGXXXXXXXXXXXXXXXXXXXXXXKEAVDGPSPLRFLREFGAVVVVGVYTDAAHAASHRARYGGSNVGDVGXXXXXXXXXXXXXFXGVREXXXXXXGSRVHPSECLEARCARVRPHADRLVVVDSADPARVREILFGAAAGAVGM----GAPTNNCCFVVSDWGARGPGGSGAGRRARRDVRALMEASMPVFRLPSPTWECAVTNSDGEE 1068
            +FLEAKAGATVL SE+RDLVQFVDMNMH FRK+LKK DKW  GV GREYFT+L+QT  WINGDRAHG+LRMASAMS+HLRSLRPALALGPAAGGPCWADR VYSVGTFDRPRL         P +  + TP                        FGY G G                      KEAV+GPSPLRFLREFGAVVVVGVYTDAAHAAS              XXXXXXXXXXXXX                 P E LEAR ARVRPHADR+VVVDSADPARVREILFGAAAGAVG     GAPTNNCCFVVSDWGARGPGG+GAGRRARRDVRALMEASMPVFRLPSPTWECAVT+SDGEE
Sbjct:  149 KFLEAKAGATVLLSESRDLVQFVDMNMHAFRKLLKKLDKWTGGVSGREYFTSLIQTHSWINGDRAHGVLRMASAMSDHLRSLRPALALGPAAGGPCWADRTVYSVGTFDRPRLPPAE-----PSALPNTTPXXXXXXXXXXXXXXXXXXXXESLAFGYFGSGRPPSPPPTSAVTSAT-------KEAVEGPSPLRFLREFGAVVVVGVYTDAAHAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--------------RPFESLEARVARVRPHADRVVVVDSADPARVREILFGAAAGAVGDTRGGGAPTNNCCFVVSDWGARGPGGTGAGRRARRDVRALMEASMPVFRLPSPTWECAVTDSDGEE 492
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13955.3137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYK0_ECTSI1.810e-13967.03SPX domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13955contigH-canaliculatus_F_contig13955:621..2880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1146
Cds size1146
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13955.3137.1prot_H-canaliculatus_F_contig13955.3137.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13955 621..2880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929140.6582913-CDS-H-canaliculatus_F_contig13955:620..7121622929140.6582913-CDS-H-canaliculatus_F_contig13955:620..712Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13955 621..712 +
1696845692.7179027-CDS-H-canaliculatus_F_contig13955:620..7121696845692.7179027-CDS-H-canaliculatus_F_contig13955:620..712Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13955 621..712 +
1622929140.7013638-CDS-H-canaliculatus_F_contig13955:1322..14311622929140.7013638-CDS-H-canaliculatus_F_contig13955:1322..1431Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13955 1323..1431 +
1696845692.7280927-CDS-H-canaliculatus_F_contig13955:1322..14311696845692.7280927-CDS-H-canaliculatus_F_contig13955:1322..1431Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13955 1323..1431 +
1622929140.717422-CDS-H-canaliculatus_F_contig13955:1935..28801622929140.717422-CDS-H-canaliculatus_F_contig13955:1935..2880Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13955 1936..2880 +
1696845692.738584-CDS-H-canaliculatus_F_contig13955:1935..28801696845692.738584-CDS-H-canaliculatus_F_contig13955:1935..2880Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13955 1936..2880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13955.3137.1

>prot_H-canaliculatus_F_contig13955.3137.1 ID=prot_H-canaliculatus_F_contig13955.3137.1|Name=mRNA_H-canaliculatus_F_contig13955.3137.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=382bp
RFLEAKAGATVLTSEARDLVQFVDMNMHGFRKVLKKFDKWASGVRGREYF
TALVQTQPWINGDRAHGILRMASAMSEHLRSLRPALALGPAAGGPCWADR
IVYSVGTFDRPRLSAGADVDGGPLSTMSITPPGSAATSPSGRRGLFGYGG
DGGGGIDGGGIEVAAAAAAAAAAAKEAVDGPSPLRFLREFGAVVVVGVYT
DAAHAASHRARYGGSNVGDVGGGGGGGGGGGGGGFGGVREGGGQGGGSRV
HPSECLEARCARVRPHADRLVVVDSADPARVREILFGAAAGAVGMGAPTN
NCCFVVSDWGARGPGGSGAGRRARRDVRALMEASMPVFRLPSPTWECAVT
NSDGEEEEEEEEGEGTGGGGGGGGRGARVAA*
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mRNA from alignment at H-canaliculatus_F_contig13955:621..2880+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13955.3137.1 ID=mRNA_H-canaliculatus_F_contig13955.3137.1|Name=mRNA_H-canaliculatus_F_contig13955.3137.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2260bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13955:621..2880+ (Hapterophycus canaliculatus Oshoro5f female)
AGGTTCCTGGAGGCAAAGGCGGGCGCGACCGTGCTCACCTCTGAGGCGCG
GGACCTCGTGCAGTTCGTCGACATGAACATGCACGGTTTTCGGTGAGTCC
CAATAAAACATTAAGCGCGGGGGAGGGGGCATCGCGGCGCATGGACTCGT
GCACGAGAAAATGTGGCGTCTAGCCTTCTGCGCTCGCGTCCTTTCGGGAG
CTCGAGGAGCTTTTTTCTTTGCCGTGTTTGTTCGGTTTTCGGTTTTTCGG
TTTTCGTGTTTCGGTTTCGATCCCGATTCCCGTTCCGATTCCCATTCCGG
TTTGCCGCTGCACGAAGCACGGCGGAGGCTTGTCCGTCCCCATGCGGCAT
CACCGTCCACCAAACGCCCCGCGAGCCTCGCGACAACCGTTGGTGGTCAA
CAGTCATCCGGAGCTACTGATGTTTGACATCATGTGTACGATGTCTTGGA
ACGATGTTTGGCTTCATCAACCGCTTGCCTCGGGAGGGGGGCGGCCGCTG
GGGGATTGGGAGCGAGCAGAATCGCAGAGCATGTTGTGTGAGTGTAGCAA
CCCACGCAGAAGGCGCTCGGCCCGTATGTCGCGCTTTTTCGTTCGATGCT
TTCCCAACTCGTGATGGGGTATCTTCCCAACTCGTGATGGGGTATCTCGC
CTTAAGAGTCACACGTGTCCTCCCGTTTCTCTTTTTTCCGTGGGGACCAC
AGAAAAGTGCTCAAGAAGTTCGACAAGTGGGCCAGCGGGGTCAGAGGCCG
AGAGTACTTCACGGCCCTGGTACAGACTCAGCCTTGGATCAACGGCGATC
GAGCCCACGGGGTGAGCGAGGATAGCTCGAGGAGATGAGAGGGAGCGCAA
ATAGGAACAGGCAGGCGGGCGGTGGTGTCTTTATCCGTTCTATTTTCTCA
CGCGCGGCAGTATTGTTGGTGTTGCTGTGGTTCTTTATGTTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGC
TGTTGCTGTCTTGTGTGTTGAAGAGCAAGTGCCCCCCGTCTCCGGACACG
GCAAACCTTGCGCGACGCAACCACACGTACCCCAAGTCTGACCCTCTCGC
GGGCCCCCCCCCTTCACTCTACCCCTGCCACCTCCAAACCCCTCGCGCAG
CCCTTGCCATGTAAGCACCACCCCGAAGCCTCTTCCCCCTATCGCCCGAC
GTGACACCACAATCTCGCCGAGACGATTTTTTCTCGACATTCGTTGACCT
GTTCCCGCTTTCGCCACCGCACGCAAACGCGCTCGCTCACACGAACACCC
CAAATCCGCGGAAAGATCCTGCGAATGGCGTCCGCTATGTCGGAGCACCT
TCGAAGCTTGCGCCCGGCCCTAGCTCTGGGACCCGCCGCCGGCGGCCCCT
GCTGGGCGGACCGCATCGTGTACAGTGTGGGAACTTTCGACCGGCCACGG
CTGTCCGCGGGGGCCGACGTCGACGGCGGCCCGCTGTCGACGATGTCGAT
CACTCCTCCGGGCAGCGCCGCCACGAGCCCGTCAGGACGACGCGGCTTGT
TCGGGTACGGCGGCGACGGCGGAGGCGGCATCGACGGCGGCGGCATCGAG
GTGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGAAGGAGGCGGTCGA
CGGCCCGTCCCCGCTACGCTTCTTGCGGGAGTTCGGAGCGGTCGTCGTGG
TCGGCGTTTACACCGACGCCGCTCACGCGGCCTCCCACCGCGCGCGGTAC
GGCGGCAGCAACGTCGGCGACGTCGGTGGCGGCGGTGGCGGCGGCGGCGG
CGGCGGCGGCGGAGGCTTCGGCGGCGTGCGCGAGGGGGGTGGTCAAGGCG
GCGGGTCTAGAGTCCACCCGTCCGAGTGCCTGGAAGCCCGCTGCGCCCGC
GTGCGCCCCCACGCCGACCGCCTCGTGGTGGTAGATTCCGCGGACCCGGC
CAGGGTCAGAGAGATCCTGTTCGGCGCCGCGGCGGGGGCGGTGGGGATGG
GGGCACCCACCAACAACTGCTGCTTCGTCGTGTCGGACTGGGGGGCGAGG
GGCCCCGGCGGTTCGGGGGCGGGGAGGCGGGCGCGGCGGGATGTCCGGGC
TTTGATGGAGGCCAGCATGCCCGTGTTTCGGCTGCCTAGCCCCACGTGGG
AGTGCGCCGTCACCAATAGCGACGGCGAGGAGGAGGAGGAGGAGGAGGAG
GGAGAGGGGACGGGCGGGGGTGGGGGCGGAGGCGGGAGAGGGGCGAGGGT
GGCGGCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13955:621..2880+

>mRNA_H-canaliculatus_F_contig13955.3137.1 ID=mRNA_H-canaliculatus_F_contig13955.3137.1|Name=mRNA_H-canaliculatus_F_contig13955.3137.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2292bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13955:621..2880+ (Hapterophycus canaliculatus Oshoro5f female)
AGGTTCCTGGAGGCAAAGGCGGGCGCGACCGTGCTCACCTCTGAGGCGCG
GGACCTCGTGCAGTTCGTCGACATGAACATGCACGGTTTTCGAGGTTCCT
GGAGGCAAAGGCGGGCGCGACCGTGCTCACCTCTGAGGCGCGGGACCTCG
TGCAGTTCGTCGACATGAACATGCACGGTTTTCGAAAAGTGCTCAAGAAG
TTCGACAAGTGGGCCAGCGGGGTCAGAGGCCGAGAGTACTTCACGGCCCT
GGTACAGACTCAGCCTTGGATCAACGGCGATCGAGCCCACGGGAAAAGTG
CTCAAGAAGTTCGACAAGTGGGCCAGCGGGGTCAGAGGCCGAGAGTACTT
CACGGCCCTGGTACAGACTCAGCCTTGGATCAACGGCGATCGAGCCCACG
GGATCCTGCGAATGGCGTCCGCTATGTCGGAGCACCTTCGAAGCTTGCGC
CCGGCCCTAGCTCTGGGACCCGCCGCCGGCGGCCCCTGCTGGGCGGACCG
CATCGTGTACAGTGTGGGAACTTTCGACCGGCCACGGCTGTCCGCGGGGG
CCGACGTCGACGGCGGCCCGCTGTCGACGATGTCGATCACTCCTCCGGGC
AGCGCCGCCACGAGCCCGTCAGGACGACGCGGCTTGTTCGGGTACGGCGG
CGACGGCGGAGGCGGCATCGACGGCGGCGGCATCGAGGTGGCGGCGGCGG
CGGCGGCGGCGGCAGCGGCGGCGAAGGAGGCGGTCGACGGCCCGTCCCCG
CTACGCTTCTTGCGGGAGTTCGGAGCGGTCGTCGTGGTCGGCGTTTACAC
CGACGCCGCTCACGCGGCCTCCCACCGCGCGCGGTACGGCGGCAGCAACG
TCGGCGACGTCGGTGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGA
GGCTTCGGCGGCGTGCGCGAGGGGGGTGGTCAAGGCGGCGGGTCTAGAGT
CCACCCGTCCGAGTGCCTGGAAGCCCGCTGCGCCCGCGTGCGCCCCCACG
CCGACCGCCTCGTGGTGGTAGATTCCGCGGACCCGGCCAGGGTCAGAGAG
ATCCTGTTCGGCGCCGCGGCGGGGGCGGTGGGGATGGGGGCACCCACCAA
CAACTGCTGCTTCGTCGTGTCGGACTGGGGGGCGAGGGGCCCCGGCGGTT
CGGGGGCGGGGAGGCGGGCGCGGCGGGATGTCCGGGCTTTGATGGAGGCC
AGCATGCCCGTGTTTCGGCTGCCTAGCCCCACGTGGGAGTGCGCCGTCAC
CAATAGCGACGGCGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGGGGACGG
GCGGGGGTGGGGGCGGAGGCGGGAGAGGGGCGAGGGTGGCGGCGTGAATC
CTGCGAATGGCGTCCGCTATGTCGGAGCACCTTCGAAGCTTGCGCCCGGC
CCTAGCTCTGGGACCCGCCGCCGGCGGCCCCTGCTGGGCGGACCGCATCG
TGTACAGTGTGGGAACTTTCGACCGGCCACGGCTGTCCGCGGGGGCCGAC
GTCGACGGCGGCCCGCTGTCGACGATGTCGATCACTCCTCCGGGCAGCGC
CGCCACGAGCCCGTCAGGACGACGCGGCTTGTTCGGGTACGGCGGCGACG
GCGGAGGCGGCATCGACGGCGGCGGCATCGAGGTGGCGGCGGCGGCGGCG
GCGGCGGCAGCGGCGGCGAAGGAGGCGGTCGACGGCCCGTCCCCGCTACG
CTTCTTGCGGGAGTTCGGAGCGGTCGTCGTGGTCGGCGTTTACACCGACG
CCGCTCACGCGGCCTCCCACCGCGCGCGGTACGGCGGCAGCAACGTCGGC
GACGTCGGTGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGAGGCTT
CGGCGGCGTGCGCGAGGGGGGTGGTCAAGGCGGCGGGTCTAGAGTCCACC
CGTCCGAGTGCCTGGAAGCCCGCTGCGCCCGCGTGCGCCCCCACGCCGAC
CGCCTCGTGGTGGTAGATTCCGCGGACCCGGCCAGGGTCAGAGAGATCCT
GTTCGGCGCCGCGGCGGGGGCGGTGGGGATGGGGGCACCCACCAACAACT
GCTGCTTCGTCGTGTCGGACTGGGGGGCGAGGGGCCCCGGCGGTTCGGGG
GCGGGGAGGCGGGCGCGGCGGGATGTCCGGGCTTTGATGGAGGCCAGCAT
GCCCGTGTTTCGGCTGCCTAGCCCCACGTGGGAGTGCGCCGTCACCAATA
GCGACGGCGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGGGGACGGGCGGG
GGTGGGGGCGGAGGCGGGAGAGGGGCGAGGGTGGCGGCGTGA
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