mRNA_H-canaliculatus_F_contig13946.3133.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13946.3133.1
Unique NamemRNA_H-canaliculatus_F_contig13946.3133.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13946.3133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13946contigH-canaliculatus_F_contig13946:1211..1430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size211
Cds size162
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13946.3133.1prot_H-canaliculatus_F_contig13946.3133.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13946 1211..1382 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929139.9729826-CDS-H-canaliculatus_F_contig13946:1210..13341622929139.9729826-CDS-H-canaliculatus_F_contig13946:1210..1334Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13946 1211..1334 -
1696845692.4413068-CDS-H-canaliculatus_F_contig13946:1210..13341696845692.4413068-CDS-H-canaliculatus_F_contig13946:1210..1334Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13946 1211..1334 -
1622929139.9854121-CDS-H-canaliculatus_F_contig13946:1344..13821622929139.9854121-CDS-H-canaliculatus_F_contig13946:1344..1382Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13946 1345..1382 -
1696845692.4524379-CDS-H-canaliculatus_F_contig13946:1344..13821696845692.4524379-CDS-H-canaliculatus_F_contig13946:1344..1382Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13946 1345..1382 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929140.004902-UTR-H-canaliculatus_F_contig13946:1382..14301622929140.004902-UTR-H-canaliculatus_F_contig13946:1382..1430Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13946 1383..1430 -
1696845692.460779-UTR-H-canaliculatus_F_contig13946:1382..14301696845692.460779-UTR-H-canaliculatus_F_contig13946:1382..1430Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13946 1383..1430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13946.3133.1

>prot_H-canaliculatus_F_contig13946.3133.1 ID=prot_H-canaliculatus_F_contig13946.3133.1|Name=mRNA_H-canaliculatus_F_contig13946.3133.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=54bp
MQRLRKIRVQGTGRRFKTRILRVHDERCARGNEIRTRNCLHEGCINRART
LSHD
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mRNA from alignment at H-canaliculatus_F_contig13946:1211..1430-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13946.3133.1 ID=mRNA_H-canaliculatus_F_contig13946.3133.1|Name=mRNA_H-canaliculatus_F_contig13946.3133.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=220bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13946:1211..1430- (Hapterophycus canaliculatus Oshoro5f female)
ATTGGGGTCTTGTCCTGAGTCTAGGCTGCACGGTGTACGAACAAGCGAAT
GCAGCGTTTAAGGAAAATTCGAGTACAGGGTACAGGGTGACAGGAGGAGG
AGATTCAAGACGAGAATCCTTCGTGTTCACGACGAGCGTTGTGCTCGTGG
GAATGAGATTAGAACTCGCAACTGCCTACACGAGGGGTGCATCAACCGTG
CTCGGACGCTCTCGCATGAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13946:1211..1430-

>mRNA_H-canaliculatus_F_contig13946.3133.1 ID=mRNA_H-canaliculatus_F_contig13946.3133.1|Name=mRNA_H-canaliculatus_F_contig13946.3133.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=324bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13946:1211..1430- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGCGTTTAAGGAAAATTCGAGTACAGGGTACAGGATGCAGCGTTTA
AGGAAAATTCGAGTACAGGGTACAGGGAGGAGATTCAAGACGAGAATCCT
TCGTGTTCACGACGAGCGTTGTGCTCGTGGGAATGAGATTAGAACTCGCA
ACTGCCTACACGAGGGGTGCATCAACCGTGCTCGGACGCTCTCGCATGAT
GAGGAGATTCAAGACGAGAATCCTTCGTGTTCACGACGAGCGTTGTGCTC
GTGGGAATGAGATTAGAACTCGCAACTGCCTACACGAGGGGTGCATCAAC
CGTGCTCGGACGCTCTCGCATGAT
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