mRNA_H-canaliculatus_F_contig13933.3126.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13933.3126.1
Unique NamemRNA_H-canaliculatus_F_contig13933.3126.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13933.3126.1 vs. uniprot
Match: A0A6H5L8D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D9_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.000e-7
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   82 SCEDLDPRKTT---VVGAVYFGGDIVCTEPRVIEVAERTDVLVISDRPTLRIRGVRFVVAKNATMHINVDSMVVEAIE 306
            SC +L   +T    V G +    DIVCTE R++EV    DV+V+SD+P LR++GV FVV +  ++   V +MV+E IE
Sbjct:  593 SCNELRFERTPIQGVSGVLLLDDDIVCTEKRILEVDH--DVIVVSDKPDLRLKGVHFVVHEKVSLTFVVATMVLEKIE 668
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BLAST of mRNA_H-canaliculatus_F_contig13933.3126.1 vs. uniprot
Match: D7G9G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G6_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 4.030e-7
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:   76 IFSCEDLDPRKTTVVG---AVYFGGDIVCTEPRVIEVAERTDVLVISDRPTLRIRGVRFVVAKNATMHINVDSMVVEAIE 306
            + SC++L   +T V G   A+    DI+CTE RV+EV ++  +LV+SD+P LR++GV F V K A +   V ++ +E +E
Sbjct:  326 LHSCDELRSERTHVQGMSGALLLDFDILCTETRVLEVTDK--LLVVSDKPNLRLKGVHFRVRKKAALTFMVPTLTMEKLE 403
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BLAST of mRNA_H-canaliculatus_F_contig13933.3126.1 vs. uniprot
Match: D7G9F5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F5_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 6.890e-7
Identity = 32/94 (34.04%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   34 RATAKDFDSLQHREIFSCEDLDPRKTTV---VGAVYFGGDIVCTEPRVIEVAERTDVLVISDRPTLRIRGVRFVVAKNATMHINVDSMVVEAIE 306
            R + +  D +    + SC++L  ++T V    GA+    DIVC E RV+EV +  ++L++S++P LR++GV F V K A +   V ++ +E +E
Sbjct:   43 RRSLRVVDDVPLSTLHSCDELRSKRTRVQGVAGALLLDFDIVCPEKRVLEVTD--NLLIMSNKPDLRLKGVHFRVRKKAALTFMVPTLTLEKLE 134
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BLAST of mRNA_H-canaliculatus_F_contig13933.3126.1 vs. uniprot
Match: D8LLS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS3_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 7.620e-7
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:   82 SCEDLDPRKTTVVGAVYFGGDIVCTEPRVIEVAERTDVLVISDRPTLRIRGVRFVVAKNATMHINVDSMVVE 297
            SC+DL   +T   G V    DIVC EP+VIE+AE ++ ++     TL  R VRF V K  TMHI   ++  E
Sbjct:  249 SCDDLPNERTPFEGVVSVTADIVCPEPKVIEIAEGSNNVLFVAVDTLYTRNVRFNVRKGETMHIRAPALTFE 320
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BLAST of mRNA_H-canaliculatus_F_contig13933.3126.1 vs. uniprot
Match: D8LLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ5_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 7.650e-7
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:   55 DSLQHREIFSCEDLDPRKTT---VVGAVYFGGDIVCTEPRVIEVAERTDVLVISDRPTLRIRGVRFVVAKNATMHINVDSMVVEAIE 306
            D L    + SC +L   +T    V G +    DI+CTE R+++V    DV+V+SD+P LR++GV FVV +  ++   V ++V+E IE
Sbjct:  631 DGLPLYTLESCNELRFERTPIQGVSGVLLLDDDIICTEKRILDVGH--DVIVVSDKPDLRLKGVHFVVNEKVSLTFMVATIVLEKIE 715
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BLAST of mRNA_H-canaliculatus_F_contig13933.3126.1 vs. uniprot
Match: D8LLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ0_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.660e-6
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   82 SCEDLDPRKTTVVGA---VYFGGDIVCTEPRVIEVAERTDVLVISDRPTLRIRGVRFVVAKNATMHINVDSMVVEAIE 306
            SC++L   +T V G    +    DI+C E R++EV    DV+V+SD+P LR++GV FVV +  ++   V +MV+E +E
Sbjct:  441 SCDELRFERTPVQGVSGVLLLDDDIICREERILEVDH--DVIVVSDKPDLRLKGVHFVVHEKVSLTFIVATMVLEKLE 516
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BLAST of mRNA_H-canaliculatus_F_contig13933.3126.1 vs. uniprot
Match: D8LLQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ1_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 8.000e-6
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:   82 SCEDLDPRKTTVVG---AVYFGGDIVCTEPRVIEVAERTDVLVISDRPTLRIRGVRFVVAKNATMHINVDSMVVEAIE 306
            SC +L   +T V G    +    D++C E R++EV     V+V+SD+P LR++GV FVV + A++   V +MV+E +E
Sbjct:  109 SCNELRFERTPVEGMSGVLLLDDDVMCKEKRILEVGHH--VIVVSDKPDLRLKGVHFVVQEKASLTFIVATMVLEKLE 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13933.3126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L8D9_9PHAE3.000e-743.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9G6_ECTSI4.030e-740.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G9F5_ECTSI6.890e-734.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLS3_ECTSI7.620e-743.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ5_ECTSI7.650e-737.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ0_ECTSI2.660e-639.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ1_ECTSI8.000e-638.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13933contigH-canaliculatus_F_contig13933:550..1526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size307
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.8052661-CDS-H-canaliculatus_F_contig13933:549..7141622929138.8052661-CDS-H-canaliculatus_F_contig13933:549..714Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13933 550..714 +
1696845692.0949264-CDS-H-canaliculatus_F_contig13933:549..7141696845692.0949264-CDS-H-canaliculatus_F_contig13933:549..714Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13933 550..714 +
1622929138.8334498-CDS-H-canaliculatus_F_contig13933:1385..15261622929138.8334498-CDS-H-canaliculatus_F_contig13933:1385..1526Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13933 1386..1526 +
1696845692.10346-CDS-H-canaliculatus_F_contig13933:1385..15261696845692.10346-CDS-H-canaliculatus_F_contig13933:1385..1526Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13933 1386..1526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13933.3126.1prot_H-canaliculatus_F_contig13933.3126.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13933 550..1526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13933.3126.1

>prot_H-canaliculatus_F_contig13933.3126.1 ID=prot_H-canaliculatus_F_contig13933.3126.1|Name=mRNA_H-canaliculatus_F_contig13933.3126.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=102bp
MKKSVIDANRERATAKDFDSLQHREIFSCEDLDPRKTTVVGAVYFGGDIV
CTEPRVIEVAERTDVLVISDRPTLRIRGVRFVVAKNATMHINVDSMVVEA
IE
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mRNA from alignment at H-canaliculatus_F_contig13933:550..1526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13933.3126.1 ID=mRNA_H-canaliculatus_F_contig13933.3126.1|Name=mRNA_H-canaliculatus_F_contig13933.3126.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=977bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13933:550..1526+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGAAGAGCGTCATCGACGCCAACAGGGAAAGGGCCACGGCAAAAGA
CTTCGACAGCCTCCAGCATCGAGAGATCTTCTCCTGCGAGGACCTCGACC
CCCGAAAGACTACCGTGGTGGGCGCCGTGTACTTCGGTGGCGACATTGTC
TGCACGGAGCCGCGGGTGAGGTCCTGTGCTTTCTTACTTGATGCCGTTGG
CGAGAACCGTGCGAAGAAGCTCCAAATGTTAGGCCAAAGTTCCTTGAGAT
TGCAGTAGTCGGTCAACGAAAAACAAAACAACAAACGAATCCTAGGGACG
CCGCCGCAGTAAAATACCTGGCTCCCGGGCGAACGGCGGTGGCTGATAAA
TGTGGAGAGGGCCCGCCATAGACAATGAACTTTCTCGTCCTGCAATACGA
CGTAGCCATACGCTTTTCATTGCAGCACCAAGCCTTCCACTAACGCACAT
GCTTTGTTTGACTGTTTTCAACTCTTGGTAAGCACCCCCTGACCGGCCCA
ACTCAACAGCCAGCGTCAGTCTGAGATATGTCAAGTCCGCTCAGCAACAA
CGGCTATCTAAGGGCGACTCTCGCAACCACCCTTCCCTCGAATGAAGTCT
CGACAAAGTGGCAGCAGCACGCTAAGCAGTGTCGTATCAACGGCAATACA
GATACCGCCATCGCAACCAACCACGCCGACAACAACAGCCTGGATCACAG
CACATACCAAATACATACACATGGTGTGTAGGCCTGCGTCTCACTCTCGT
TCTACCCCAACACCCGTTGTGCTTTGTCCCCGCTTCTTTGCTTTTCCCCA
CGGCCGTCCATTCCAACAATACGAACATATTCCCAGGTCATCGAAGTGGC
CGAACGCACCGATGTGCTGGTCATTTCTGACAGGCCAACTCTTCGAATTC
GAGGGGTGCGCTTCGTCGTCGCGAAAAACGCCACCATGCACATCAACGTC
GATAGCATGGTGGTAGAGGCCATCGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13933:550..1526+

>mRNA_H-canaliculatus_F_contig13933.3126.1 ID=mRNA_H-canaliculatus_F_contig13933.3126.1|Name=mRNA_H-canaliculatus_F_contig13933.3126.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13933:550..1526+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGAAGAGCGTCATCGACGCCAACAGGGAAAGGGCCACGGCAAAAGA
CTTCGACAGCCTCCAGCATCGAGAGATCTTCTCCTGCGAGGACCTCGACC
CCCGAAAGACTACCGTGGTGGGCGCCGTGTACTTCGGTGGCGACATTGTC
TGCACGGAGCCGCGGATGAAGAAGAGCGTCATCGACGCCAACAGGGAAAG
GGCCACGGCAAAAGACTTCGACAGCCTCCAGCATCGAGAGATCTTCTCCT
GCGAGGACCTCGACCCCCGAAAGACTACCGTGGTGGGCGCCGTGTACTTC
GGTGGCGACATTGTCTGCACGGAGCCGCGGGTCATCGAAGTGGCCGAACG
CACCGATGTGCTGGTCATTTCTGACAGGCCAACTCTTCGAATTCGAGGGG
TGCGCTTCGTCGTCGCGAAAAACGCCACCATGCACATCAACGTCGATAGC
ATGGTGGTAGAGGCCATCGAGGTCATCGAAGTGGCCGAACGCACCGATGT
GCTGGTCATTTCTGACAGGCCAACTCTTCGAATTCGAGGGGTGCGCTTCG
TCGTCGCGAAAAACGCCACCATGCACATCAACGTCGATAGCATGGTGGTA
GAGGCCATCGAG
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