mRNA_H-canaliculatus_F_contig1393.3123.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1393.3123.1
Unique NamemRNA_H-canaliculatus_F_contig1393.3123.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1393.3123.1 vs. uniprot
Match: D7G884_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G884_ECTSI)

HSP 1 Score: 585 bits (1507), Expect = 2.600e-200
Identity = 373/646 (57.74%), Postives = 425/646 (65.79%), Query Frame = 1 
Query:    1 MGIMAKLKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEDALAALGGRHNERLSVLELQLKADENKVKGAFERERAVLLGKQEKQFVRLVDDAIKRAIGKSKARYGSSDCFPHHFSPHSCSCEKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLDESAAWEEKAAELDADHLDKWREEVAASLTASAWGGSSSALDQLASQHQREITRMETAQANEWTLMLLRHRTARRNCQNAIMQLRNACKKNAEERHRREMVGEPDQTCGRESSPGDPDEENISSMLRDAIDDENFADGEVEQAGRADSCDHGSAANRPPVRPTSAPPARGRRPQPSS-----NSGNPQASITGPVAMTGGVRGGRGGGGVAEVEGED-EDDDSFGKDSHDLRGFDELEGETAASFSYEDYPVAGSPGEPEWTHNPWCGTNSGDTLILDK--NEVRAGGKGTPG-ETQVSASSSVVSPTSSAEHVDAALVETAV----------GVGQEQG-----------------------------------DSAAVVSPLSSAANG-EEDSYCGGRVSGKETPPRVSRGPSSPRTVAGGRELKRYDWGGADAVPTKPSLLAASRIPTGNRADKQRYRNAKRKDATRK 1773
            MGIMAKLKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILE+ LAAL  +H E+L+ LE +LK DE KV  +FERERAVLL KQEKQFV+LVDDAIKRAIGKSK                      KYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLDESAAWEEKAAELDA+HLD WREEVAASLTASAWGGSSSALDQLA++HQREI+RMETAQAN WTLML+RH+TARRNC N IM  R                                 ++++  MLR+ I+DE  A GE E  G+      G+AA RPP RP+SAPPARG+RPQP++     N+ N   ++  P + T   + G G    A  EG   +DDDSFGKDSHDLRGFDELEGE    FSY+DYP AGSP EPEW H PWCGTNSGD  +LDK  ++      GTP  +  + AS++   P+SSA  VD       V          G G+++G                                   D+AA VSPLS A  G E DS   G  SG+ +P  V  G +SPR +AGG EL+RY+W GADA PTKPSLL  SRIPTGNRADKQR+RNAKR+DA RK
Sbjct:    1 MGIMAKLKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEEELAALAIQHREKLASLEQELKEDEQKVSRSFERERAVLLRKQEKQFVQLVDDAIKRAIGKSK----------------------KYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLDESAAWEEKAAELDANHLDSWREEVAASLTASAWGGSSSALDQLATEHQREISRMETAQANGWTLMLMRHQTARRNCHNVIMVER---------------------------------KKDVEGMLRNVIEDEGSATGEAE--GKEAQPSGGTAAGRPPTRPSSAPPARGKRPQPAAATTKNNNQNLSETVAAPPSAT--EKAGEGENVGAADEGVHVDDDDSFGKDSHDLRGFDELEGEAWKKFSYDDYPAAGSPEEPEWIHTPWCGTNSGDIPVLDKVSDKKVLDSDGTPMVQLVLPASTASAPPSSSAGRVDGNTATQPVVRGGGASEGFGDGEDKGVIAEHKRDVGSPRSGAEGGADKGRPCSATGELFTGDAAAAVSPLSFAGEGAERDSQVDGGGSGR-SPGSVGDGFTSPRALAGGGELRRYNWLGADAAPTKPSLLTTSRIPTGNRADKQRFRNAKRQDANRK 586
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BLAST of mRNA_H-canaliculatus_F_contig1393.3123.1 vs. uniprot
Match: A0A836CD74_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD74_9STRA)

HSP 1 Score: 256 bits (654), Expect = 2.990e-76
Identity = 142/253 (56.13%), Postives = 176/253 (69.57%), Query Frame = 1 
Query:   10 MAKLKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEDALAALGGRHNERLSVLELQLKADENKVKGAFERERAVLLGKQEKQFVRLVDDAIKRAIGKSKARYGSSDCFPHHFSPHSCSCEKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLDESAAWEEKAAELDADHLDKWREEVAASLTASAWGGSSSALDQLASQHQREITRMETAQANEWTLMLLRHRTARRNCQNAI 768
            M+KLKKLQKERLIVARLGFP+KAMEIDE ++KIR DL++ER   D R+L   L  L   H  R   LE ++  +E +++G F  E+  L  K + +F+ LV  A KRAIG+SK                SCSC KKYLC HNKTAS+NTRRPKK+VIH+R+NA RL+HGGRL+E+ AWEEKAAELDA HL++WRE VA SL ASAWGGSSSALD L  +HQ E+ ++E  Q+N W LM + H   RRN  N +
Sbjct:   77 MSKLKKLQKERLIVARLGFPEKAMEIDEMVQKIRDDLKTERAAEDERVLMVELERLQEAHAARAEALEQRIGEEEQQMRGKFCEEQRRLRKKHDSEFLDLVTAATKRAIGRSK----------------SCSCTKKYLCTHNKTASYNTRRPKKDVIHYRRNASRLKHGGRLEEAKAWEEKAAELDARHLEQWREHVARSLAASAWGGSSSALDHLGERHQHELEQLEVGQSNRWRLMTMHHAVLRRNLGNTM 313
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BLAST of mRNA_H-canaliculatus_F_contig1393.3123.1 vs. uniprot
Match: A0A6C0BWQ3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BWQ3_9ZZZZ)

HSP 1 Score: 137 bits (344), Expect = 7.890e-31
Identity = 80/250 (32.00%), Postives = 143/250 (57.20%), Query Frame = 1 
Query:    1 MGIMAKLKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEDALAALGGRHNERLSVLELQLKADENKVKGAFERERAVLLGKQEKQFVRLVDDAIKRAIGKSKARYGSSDCFPHHFSPHSCSCEKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLDESAAWEEKAAELDADHLDKWREEVAASLTASAWGGSSSALDQLASQHQREITRMETAQANEWTLMLLRHRTARR 750
            +  ++ LKKLQKERLI++RLGF +KA  +D+ IE +R   +  R+  + +++ + L  L  ++  +   L+  +K + ++            + K   +F++++++A +++IGK K                SC+CE  YLCHHNKT+S+N R+PK  VI +RKN+KRL+ GGR +++   EEKA E+D +   +W++ +A S+  S W  +   +D+    H++E+  ME  + +E+     + R +RR
Sbjct:   70 LNAISALKKLQKERLIISRLGFAEKAYALDKQIEVMREKAKVVRKAEEEKLMAEMLETLHKKNERKQQRLDAVIKQEHDEXXXXXXXXXXXXIEKHRTEFLKIIENAERKSIGKIK----------------SCNCENDYLCHHNKTSSWNIRKPKPIVILYRKNSKRLKQGGRTEDAIQIEEKADEIDYESQIEWKKNIATSIVQSPWNANEPIIDRTIENHKKELETME--KTHEFKRNAFKERCSRR 301
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BLAST of mRNA_H-canaliculatus_F_contig1393.3123.1 vs. uniprot
Match: A0A836CAU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU2_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.580e-28
Identity = 86/233 (36.91%), Postives = 133/233 (57.08%), Query Frame = 1 
Query:   19 LKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEDALAALGGRHN-------ERLSVLELQLKADENKVKGAFERERAVLLGKQEKQFVRLVDDAIKRAIGKSKARYGSSDCFPHHFSPHSCSCEKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLDESAAWEEKAAELDADHLDK-WREEVAASLTASAWGGSSSALDQLASQHQREITRME 693
            +++LQ ERL +AR+GF DKA E++  IE+ R  +  ERE+ +  IL   L++LG  H+        RL  LE +L  +  +  G   +E +    K  +++  L+++  +RA G      G S          SC C K+YLC HNKTAS+NTR+P ++VI  R+NA+RLR  GR++E+  ++ +A  +D D  DK WR  V  S+ +SAW G  S L+QL  + Q ++  +E
Sbjct:   33 IRELQMERLAMARMGFLDKAKEVENVIERERVTMLKEREEREQSILSQKLSSLGKYHHAKAMGHRRRLVALESRLTRELQQFLGKCAKELSDTKDKHRREYEALIEETAQRAYG------GVS----------SCQCRKRYLCRHNKTASYNTRKPTRDVISLRQNAERLRATGRIEEAEEFDRQAQAID-DKADKDWRTRVEQSIVSSAWSGGKSRLEQLVERQQHQLRSVE 248
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BLAST of mRNA_H-canaliculatus_F_contig1393.3123.1 vs. uniprot
Match: A0A6H5JNT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT6_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 3.850e-24
Identity = 93/260 (35.77%), Postives = 133/260 (51.15%), Query Frame = 1 
Query:   19 LKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEDALAALGGRHNERLSVLELQLKADENKVKGAFERERAVLLGKQEKQFVRLVDDAIKRAIGKSKARYGSSDCFPHHFSPHSCSCEKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLDESAAWEEKAAELDADHLDK-WREEV-------AASLT-------ASAWGGSSSALDQLASQHQREITRMETAQANEWTLMLLRHRTARRN 753
            L++LQ ERL +AR+GF DKA E++  IE  R   + ERE+ +  IL   L  L   H  R   LE +    E + +         L  K ++++  L+++  +RA G      G S          SC CEK YLC HNKTAS+NTR+P +EVI  R+NA+RLR  GR++E+  +E +A +LD D  DK WR  V       A S          SAW G  S L+QL  + Q  +  +E     ++ L++ +    RRN
Sbjct:   79 LRELQMERLAMARMGFLDKAREVEVWIESERLKTQKEREEKEQAILAQKLGGLDISHRRRFIGLENKQGEGEAQFRAKXXXXXXELRLKHKREYDMLIEETAQRAYG------GVS----------SCQCEKTYLCRHNKTASYNTRKPTREVIRLRQNAERLRATGRVEEAEEFEIQAQDLD-DACDKQWRTRVEQRAKPYACSFLHRTSLWRTSAWSGGKSRLEQLVEKQQHTVKSLEETHEAKYELLVKQQDIQRRN 321
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BLAST of mRNA_H-canaliculatus_F_contig1393.3123.1 vs. uniprot
Match: D8LM25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM25_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.350e-19
Identity = 88/305 (28.85%), Postives = 147/305 (48.20%), Query Frame = 1 
Query:   49 VARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEDALAALGGRHNERLSVLELQLKADENKVKGAFER---ERAVLLGKQEKQFVRLVDDAIKRAIGKSKARYGSSDCFPHHFSPHSCSCEKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLDESAAWEEKAAELDADHLDKWREEVAASLTASAWGGSSSALDQLASQHQREITRMETAQANEWTLMLLRHRTARRNCQNAIMQLRNA----CKKNAEERHRREMVGEPDQTCGRESSPGDPDEENISSMLRDAIDDENFADGE 942
            +AR+GF DKA E+D  +E  RA L+ ER++ D  +L+  +  L   H  R + +     A E ++    E+   E   L  KQ+K++  LV +   RA G      G S          SC C   + C HNK+AS+NTR+P K+VI  R+N +RLR  GRL E+   +  A  ++    D+WR+ V  S+ +SAW G  S L+Q+  + Q  +  + +    +   +  + R  RRN  + +   R      C++ A +R  +++     +     +   D  +    +M +D+ D ++  D E
Sbjct:    1 MARMGFLDKAEELDVMVEAERARLKKERDQQDQAVLDQKMNGLRMSHTRRSAAM---TSAHEARIASLLEKCATEIEDLKVKQKKEYDVLVGETATRATG------GVS----------SCVCTDPFKCRHNKSASYNTRKPTKDVIRLRQNGQRLRASGRLAEADEVDNMAVAIEKLAEDQWRKRVEESILSSAWCGGKSRLEQMVERQQATLRALMSTHTEKLARLKQQDRLERRNLVSTLAAERKKVILYCRREATKRRTKDIAAGAKEARTMNAHKSDGMQNVSKNMFKDSDDSQSDIDSE 286
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BLAST of mRNA_H-canaliculatus_F_contig1393.3123.1 vs. uniprot
Match: A0A835Z9J4_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9J4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.600e-9
Identity = 57/193 (29.53%), Postives = 83/193 (43.01%), Query Frame = 1 
Query:  271 VLLGKQEKQFVRLVDDAIKRAIGKSKARYGSSDCFPHHFSPHSCSCEKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLDESAA--------------------------------WEEKAAELDADHLDKWREEVAASLTASAWGGSSSALDQLASQHQREITRMETAQANEWTLMLLRHRTARRN 753
            V   KQ++Q+  LV +   RA G      G S          SC+C   Y C HNK+AS++TR+P ++VI  R+NA+RLR  GR +E+ +                                 E KAA+ +      WR  V A++ +SAW G  S L+Q+  + Q  +  +E        L    H   RRN
Sbjct:  296 VTRAKQKRQYELLVGETATRATG------GIS----------SCTCADAYACRHNKSASYSTRKPTRDVIRLRQNAQRLRASGRQEEAESRGRRGLGGSEAPECARAAGERKCGGAHLLACEMENKAADAERAAEAAWRARVEAAIVSSAWAGGKSRLEQMVERQQAVVAALEETHGERAALARKNHGILRRN 472
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1393.3123.1 vs. uniprot
Match: A0A6H5KND4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND4_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.080e-6
Identity = 38/116 (32.76%), Postives = 57/116 (49.14%), Query Frame = 1 
Query:  397 SCSCEKKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHG---------------------GRLDESAAWEEKAAELDADHLDKWREEVAASLTASAWGGSSSALDQLASQHQREI 681
            SC C   + C HNK+AS+NTR+P K+VI  R+N  R RH                      GRL E+   +  A  ++    ++WR+ V  S+ +SAW G  S L+Q+  + Q  +
Sbjct:   73 SCVCTDPFKCRHNKSASYNTRKPTKDVIRLRQNVSRPRHSPAEPPLMWLFFVSRGQRLRASGRLAEADEVDNMAVAIEKLAEEQWRKRVEESILSSAWCGGKSRLEQMVERQQATL 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1393.3123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G884_ECTSI2.600e-20057.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD74_9STRA2.990e-7656.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6C0BWQ3_9ZZZZ7.890e-3132.00Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A836CAU2_9STRA2.580e-2836.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JNT6_9PHAE3.850e-2435.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM25_ECTSI2.350e-1928.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z9J4_9STRA1.600e-929.53SWIM-type domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5KND4_9PHAE4.080e-632.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1393contigH-canaliculatus_F_contig1393:9279..14560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010640.1
Exons9
Model size1986
Cds size1986
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.3940525-CDS-H-canaliculatus_F_contig1393:9278..94911622929138.3940525-CDS-H-canaliculatus_F_contig1393:9278..9491Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 9279..9491 -
1696845691.8634534-CDS-H-canaliculatus_F_contig1393:9278..94911696845691.8634534-CDS-H-canaliculatus_F_contig1393:9278..9491Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 9279..9491 -
1622929138.4084744-CDS-H-canaliculatus_F_contig1393:9823..107111622929138.4084744-CDS-H-canaliculatus_F_contig1393:9823..10711Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 9824..10711 -
1696845691.8781018-CDS-H-canaliculatus_F_contig1393:9823..107111696845691.8781018-CDS-H-canaliculatus_F_contig1393:9823..10711Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 9824..10711 -
1622929138.4246404-CDS-H-canaliculatus_F_contig1393:10968..110821622929138.4246404-CDS-H-canaliculatus_F_contig1393:10968..11082Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 10969..11082 -
1696845691.8917267-CDS-H-canaliculatus_F_contig1393:10968..110821696845691.8917267-CDS-H-canaliculatus_F_contig1393:10968..11082Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 10969..11082 -
1622929138.4400556-CDS-H-canaliculatus_F_contig1393:11917..120341622929138.4400556-CDS-H-canaliculatus_F_contig1393:11917..12034Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 11918..12034 -
1696845691.9023843-CDS-H-canaliculatus_F_contig1393:11917..120341696845691.9023843-CDS-H-canaliculatus_F_contig1393:11917..12034Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 11918..12034 -
1622929138.4683356-CDS-H-canaliculatus_F_contig1393:12430..125471622929138.4683356-CDS-H-canaliculatus_F_contig1393:12430..12547Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 12431..12547 -
1696845691.9126616-CDS-H-canaliculatus_F_contig1393:12430..125471696845691.9126616-CDS-H-canaliculatus_F_contig1393:12430..12547Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 12431..12547 -
1622929138.4841065-CDS-H-canaliculatus_F_contig1393:12854..129951622929138.4841065-CDS-H-canaliculatus_F_contig1393:12854..12995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 12855..12995 -
1696845691.9256158-CDS-H-canaliculatus_F_contig1393:12854..129951696845691.9256158-CDS-H-canaliculatus_F_contig1393:12854..12995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 12855..12995 -
1622929138.4985564-CDS-H-canaliculatus_F_contig1393:13461..135901622929138.4985564-CDS-H-canaliculatus_F_contig1393:13461..13590Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 13462..13590 -
1696845691.941885-CDS-H-canaliculatus_F_contig1393:13461..135901696845691.941885-CDS-H-canaliculatus_F_contig1393:13461..13590Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 13462..13590 -
1622929138.5107746-CDS-H-canaliculatus_F_contig1393:13961..141051622929138.5107746-CDS-H-canaliculatus_F_contig1393:13961..14105Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 13962..14105 -
1696845691.9518356-CDS-H-canaliculatus_F_contig1393:13961..141051696845691.9518356-CDS-H-canaliculatus_F_contig1393:13961..14105Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 13962..14105 -
1622929138.5239596-CDS-H-canaliculatus_F_contig1393:14437..145601622929138.5239596-CDS-H-canaliculatus_F_contig1393:14437..14560Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 14438..14560 -
1696845691.9624662-CDS-H-canaliculatus_F_contig1393:14437..145601696845691.9624662-CDS-H-canaliculatus_F_contig1393:14437..14560Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 14438..14560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1393.3123.1prot_H-canaliculatus_F_contig1393.3123.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1393 9279..14560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1393.3123.1

>prot_H-canaliculatus_F_contig1393.3123.1 ID=prot_H-canaliculatus_F_contig1393.3123.1|Name=mRNA_H-canaliculatus_F_contig1393.3123.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=662bp
MGIMAKLKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSR
ILEDALAALGGRHNERLSVLELQLKADENKVKGAFERERAVLLGKQEKQF
VRLVDDAIKRAIGKSKARYGSSDCFPHHFSPHSCSCEKKYLCHHNKTASF
NTRRPKKEVIHFRKNAKRLRHGGRLDESAAWEEKAAELDADHLDKWREEV
AASLTASAWGGSSSALDQLASQHQREITRMETAQANEWTLMLLRHRTARR
NCQNAIMQLRNACKKNAEERHRREMVGEPDQTCGRESSPGDPDEENISSM
LRDAIDDENFADGEVEQAGRADSCDHGSAANRPPVRPTSAPPARGRRPQP
SSNSGNPQASITGPVAMTGGVRGGRGGGGVAEVEGEDEDDDSFGKDSHDL
RGFDELEGETAASFSYEDYPVAGSPGEPEWTHNPWCGTNSGDTLILDKNE
VRAGGKGTPGETQVSASSSVVSPTSSAEHVDAALVETAVGVGQEQGDSAA
VVSPLSSAANGEEDSYCGGRVSGKETPPRVSRGPSSPRTVAGGRELKRYD
WGGADAVPTKPSLLAASRIPTGNRADKQRYRNAKRKDATRKTVSWGENLE
VPPDSDCDDDDKEDTGDTEDSGGGDNVLDDIADGFVEDDFLNADDENDER
HRHRHPTSVIDA
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mRNA from alignment at H-canaliculatus_F_contig1393:9279..14560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1393.3123.1 ID=mRNA_H-canaliculatus_F_contig1393.3123.1|Name=mRNA_H-canaliculatus_F_contig1393.3123.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5282bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1393:9279..14560- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAATTATGGCCAAGCTCAAGAAGCTGCAGAAGGAGAGGCTAATCGT
AGCGCGACTAGGTTTTCCCGATAAGGCCATGGAAATCGACGAACACATCG
AGAAAATCCGAGCGGATCTCAGGGTAAATCCGCCTCTTTGAAGCTGGTTT
CTTTTGCATCTGGTATTTTTCTGCTATGGATCTTCACTCGGGTATTTACA
ACATTGGATCCACGAAGTGGGAAATGGTTCGAATGAATGTGCTTATGGAG
GACATCCAGGCATTCTCAGGTTATGCATCGAGGCCAAGAGAGGGTTTCAA
ACGCTTAGGCAGCATACCTCTCCGACAACTTTGTTACACTGGTAAGTATG
TTTTTCATGCGATGAGGTATCAACGTGTCATTACAGCAGCTCTCTAGTGT
GCCATCCCTACCGCACACACTCTTTTTTCGTGTGAAATATCGCCGCTTCT
GTCAGAGCGAGCGCGAAAAGGTGGACTCGAGAATTCTTGAAGACGCCTTG
GCAGCTCTCGGAGGCCGGCACAACGAGCGACTGTCCGTCCTCGAGCTGCA
GCTGAAAGCGGACGAGAATAAAGTCAAGGGCGCTTTCGAGAGGGAGAGGG
TGAGTAAGGGAGAGGAAAAACTTGGCTATTGGTATGCAACGACTTCAACC
TAGTGATGGGTGTTGTGCAATGTATGTGTACTCTTGAATCATGTCGATAT
GGACCATGCTTCGGGGTAGCCACTGTTGAGGCGAAAGTGTCAATTTTTGC
ATAACGGCGCGCACCGTGTCAATTTCTGCCCGGGTTCGACCCGAATCCCT
CACCCGTCCCATAACACGCGGTAAATGCTCGCTACTGTAGGAGTTGCCGA
ACGGCTGGCGTCATGCTGTCGCTGGAAATCGTGGTCGGTTAACCTCCCCC
TTCCCCATCGACCTTTCGGGTGAAAGTTTTGACTTGGACTCGTGACGATC
GGTTTCTTAAACGCAATCAGGCTGTGCTTCTGGGCAAGCAAGAGAAGCAG
TTTGTGCGGCTTGTGGACGATGCCATCAAGCGAGCAATCGGCAAAAGCAA
GGCAAGATATGGTTCATCCGATTGCTTTCCACACCATTTCAGTCCACATG
TATACATTGTTCTTTCCTCTCGCCGCACGTGTTCTCCACTGTTTTGGCCA
CCTTCGCAATTCCGACTCTGAATTTCCGTCGTTACCTCCCTTTGATTCAT
AGACCATGAGGACGGTGTTCCCCACGGTAAGAGCCTTGAGTTCGGAACGA
TCTTCCACTACCTAACATAGGTTTTCAATAGCGCACCGTCGGCAGGAGAC
CGCGCTGTCTCACTTTCAAAGCTTGGGATGCAGAACCTGTATAATCGTAC
AAGTGCATGCGGCGTCGACTCAAAAAACAAGCACAGAACTAGGCCAGGCG
TTAAACAGTCAATTGCGTCTACTCGAACGATTGTGTCCTTACACACCACC
GATCTCTTGTCATGCACGCCCCTCCCATCGCTATCTGAAACCATGTCGGA
AACTCCTCTGGTTCACGCCATCACATCCGCGGCCTCGCCAACATCAAACA
CTTCTAAATTTTCAGTCGTGCTCCTGTGAGAAGAAGTACCTGTGTCACCA
TAACAAGACGGCGAGCTTCAACACTCGTAGACCGAAGAAGGAGGTCATCC
ACTTCCGAAAAAACGCGAAACGCCTTCGGCACGGCGGCAGGCTAGACGAG
TCGGCGGTGCGGCTCTATGTTATCTTAGAATCTTTACGTGCATGAGTCTA
TGTACCCGGTGGCCCAACCACTGAAATTGATTAGTCATTGGTAGATCTGG
TTAATGCATGCAGTTCTCACGCGGCCGTGAGATGTTCCCTTTCTCTGTTT
CGAAGCTTCAGCATTAATTGTGGCGCGCACCCTCTCAGTGGATATGTAGA
ACGTGGCACAAGACTAGGTCCTCCGTGCCTCGCGCGCGTCGCCCTTCACG
AAAGGTACTATTGCAAGCTGCGGCCTTGCCACGATGCTCCTATAACCCTT
TTACTATCAACAGGCATGGGAAGAGAAAGCAGCCGAGCTGGATGCAGACC
ACTTGGACAAATGGCGAGAAGAAGTCGCCGCAAGCCTGACGGCTAGCGCG
TGGGGGGGTAGCAGCTCTGCTCTGGATCAAGTGAGCGTTCATTTGGCCCT
TCTCGCGTAAAAATTTGGAGGACCTCTTCACTGTGAAGCCTGAAAAAGAC
ACCACCATAGGCTGTTGCTAATTTCTGAGCGTCCGCATGCCCTATTTTTC
GCCGCATGGGCCGACAAATCGCGGGCTTGGATGGATCAAAGTCGAAATGA
AAGTGCTCGATCCTTGCTCGGCCTCTTTCCTGCATCTCGTGTCAGGCATC
ACATAGTCATTTTCATACCGCCGGTGCCATCGTCTCTGTGCTCTGCCGCA
TGTGTAGTTCACCGCTCCTGCCACCAGCGGAAGATACACCATGCAACTCG
CCACATCCCGTCGACGTTCTGAAAGTATGATGTTTTCCTTCCCTCGTCTC
GCGCTTCCTTCCGCGTCGGTGCATAGCTCGCCTCTCAGCACCAGCGCGAG
ATAACCCGGATGGAGACTGCGCAGGCGAACGAGTGGACGCTCATGTTGCT
TCGGCATCGAACCGCCCGGAGAAACTGCCAGAATGCCATTATGGTCGAGC
AGAAGAAGGCGAGCTCAACCGCACGCGGGGAACGGCATGAATAACAGCCC
GTCATGAATGACAAAACCCCGAAAATACTGAAATCATTTTGCAGTGCCAC
TCTCTTCGAACGTAATGGTGAAACCGAGAGAAGATTCCGCGCTCACTTGA
ACAAAGTATAGCGGTCCGGTTTCTGCCCTGTAGTCGACGTCACAGCATTT
CGACATGGAAATAAGAGCTTTGAAGTTCTCGTAGAAATCAGATATGTTAA
GCGCTAGTCCTATCGCTGCACAAGCATTAGCTAGACTGCTATGATTCCAA
TAATATATAGGTAGACATGATGCCACTTTGTGGTTTTGAGACATGATGGT
AACCATCATCGTTGAACGGTGCAAAACTGTGAATCAGGGAGCCTTTCCGG
AGTGAAAATTTTCAAAACATGCACTGAAATTCGAAATTCAGCAGGGCACT
CGTTCATTCCACTCCGAAGCCTTAAAAACAGCAGGGCACTCGTTCATTCT
ACCCCGAAGCCTTGCATCCATTGAGGGGGGGGGCAAGGACAAGCTTGCCA
TGTCACCGTTTCGATAGCCCTCTTCGGCTTCAACTTCGCTTATTCTTGCA
AATTTTCCATGATCTCCAGTTGCTCCTCTCTGGAACCTTGCTTGGGTTGT
GTATCGTGCCAACCCATAGCCTGCATCAAACGCGTGGTAACATCGGAGAT
GTTCATCTTTCTATCGACACACAATCAATGGAGCTCCAGAGGTATCCATT
ACTCCCCGCATGAGTTTCTCAGTATTTTTTACCTCGCTCGTTTTCTTCCT
CTCCTGTGTCTTACCTGTTCCCCAAAAGCAGCTCCGAAACGCTTGCAAGA
AAAACGCCGAAGAAAGACACCGCAGAGAAATGGTCGGAGAGCCGGATCAG
ACGTGCGGAAGGGAATCATCTCCTGGTGATCCTGATGAGGAGGTGTGCCT
CATTTGTTTGCGCACGGCATCCCCGTGAACGGTGCATCGGGCTCACTGAG
TAAACAAAAGTTTGTGTTCCGCAAGCTTATCTGGGGTGCGTTACTTGTCC
GAGTTATGCGTCTTTTGAAAAGGTGTCACCATCGAAGGGGTAGTGCGCCT
AAAATGATCCACCGACGCAACGATTGAAGCAACGTTATCGATGCCCGCGA
GGTATCGTCCAACGAAACGACCCACCACAAACGGTCCTTGCCTCTCCAGA
ATATTTCGAGCATGCTCAGAGACGCCATAGACGATGAGAACTTTGCCGAC
GGGGAGGTAGAGCAGGCGGGAAGAGCCGATTCCTGCGACCACGGTTCGGC
GGCGAATCGTCCGCCCGTGCGACCCACCAGCGCTCCGCCGGCTCGCGGTA
GAAGACCGCAGCCTAGCAGTAATAGCGGCAATCCACAGGCATCGATCACA
GGGCCAGTTGCGATGACAGGTGGCGTTCGTGGCGGTCGGGGTGGCGGTGG
AGTCGCGGAAGTCGAAGGCGAGGACGAAGATGATGATTCTTTCGGCAAAG
ACTCCCATGATCTGCGAGGCTTCGACGAACTCGAGGGCGAGACAGCGGCG
TCGTTCTCATACGAAGACTATCCCGTCGCGGGCTCGCCGGGGGAGCCAGA
GTGGACCCATAACCCGTGGTGCGGAACGAACAGCGGCGACACCCTCATCC
TCGACAAGAACGAGGTCCGTGCCGGCGGCAAGGGAACCCCAGGAGAAACG
CAAGTTTCGGCGTCTTCATCCGTTGTGTCACCCACATCTAGTGCAGAGCA
CGTCGACGCCGCGCTGGTGGAGACTGCTGTGGGAGTAGGACAGGAGCAAG
GAGACTCAGCAGCGGTAGTATCGCCGCTCAGCTCTGCAGCAAATGGAGAG
GAAGATTCCTACTGTGGCGGCCGCGTCTCCGGAAAGGAAACGCCGCCTCG
GGTAAGCCGTGGTCCATCTTCACCGCGAACTGTTGCCGGGGGTAGAGAGC
TAAAGAGGTATGATTGGGGAGGAGCGGATGCGGTACCGACGAAGCCGTCC
CTCCTCGCGGCGAGTCGGATACCGACGGGAAACCGCGCGGACAAGCAGAG
ATACAGGAACGCCAAGAGGAAAGATGCCACGAGGAAGGTGGGTTGCGTGG
TGCGGGCGGTGGGCTTGGCGGGATGGAAGGGTACGCGCGCGAGCTTTCGT
TGGACTTCGGTTCGTCAAACTGCATCTTCGGCATGCTTTAGAAGCCACGA
TATCGACAGGATAATGTTATGCTTCTCAATATTACCCGTGCGGGTTGTTT
GTTTTTTATTTGTTTCCAGTCATGCTCGCCGTTGGCTTCATGCTCTTCGT
CCAGCGGTTACCCTCGTACTTCCTACCACGACTGTTCGCTTGTTTCGAGA
AAATCTTCTGTAGTATCTGCTTGATACCTGCCCTTGTCCACACGTCTCGC
TTCTGCGGTATGCCTATAGACCGTCTCTTGGGGCGAGAATCTGGAGGTTC
CACCAGATTCTGATTGCGACGATGACGATAAGGAAGACACCGGCGACACC
GAAGACAGCGGCGGAGGAGACAACGTTCTTGACGATATTGCTGACGGTTT
CGTTGAAGACGATTTCCTCAACGCCGACGACGAGAACGATGAACGACACA
GACATCGCCACCCGACAAGCGTCATTGATGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1393:9279..14560-

>mRNA_H-canaliculatus_F_contig1393.3123.1 ID=mRNA_H-canaliculatus_F_contig1393.3123.1|Name=mRNA_H-canaliculatus_F_contig1393.3123.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3972bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1393:9279..14560- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAATTATGGCCAAGCTCAAGAAGCTGCAGAAGGAGAGGCTAATCGT
AGCGCGACTAGGTTTTCCCGATAAGGCCATGGAAATCGACGAACACATCG
AGAAAATCCGAGCGGATCTCAGGATGGGAATTATGGCCAAGCTCAAGAAG
CTGCAGAAGGAGAGGCTAATCGTAGCGCGACTAGGTTTTCCCGATAAGGC
CATGGAAATCGACGAACACATCGAGAAAATCCGAGCGGATCTCAGGAGCG
AGCGCGAAAAGGTGGACTCGAGAATTCTTGAAGACGCCTTGGCAGCTCTC
GGAGGCCGGCACAACGAGCGACTGTCCGTCCTCGAGCTGCAGCTGAAAGC
GGACGAGAATAAAGTCAAGGGCGCTTTCGAGAGGGAGAGGAGCGAGCGCG
AAAAGGTGGACTCGAGAATTCTTGAAGACGCCTTGGCAGCTCTCGGAGGC
CGGCACAACGAGCGACTGTCCGTCCTCGAGCTGCAGCTGAAAGCGGACGA
GAATAAAGTCAAGGGCGCTTTCGAGAGGGAGAGGGCTGTGCTTCTGGGCA
AGCAAGAGAAGCAGTTTGTGCGGCTTGTGGACGATGCCATCAAGCGAGCA
ATCGGCAAAAGCAAGGCAAGATATGGTTCATCCGATTGCTTTCCACACCA
TTTCAGTCCACATGCTGTGCTTCTGGGCAAGCAAGAGAAGCAGTTTGTGC
GGCTTGTGGACGATGCCATCAAGCGAGCAATCGGCAAAAGCAAGGCAAGA
TATGGTTCATCCGATTGCTTTCCACACCATTTCAGTCCACATTCGTGCTC
CTGTGAGAAGAAGTACCTGTGTCACCATAACAAGACGGCGAGCTTCAACA
CTCGTAGACCGAAGAAGGAGGTCATCCACTTCCGAAAAAACGCGAAACGC
CTTCGGCACGGCGGCAGGCTAGACGAGTCGGCGTCGTGCTCCTGTGAGAA
GAAGTACCTGTGTCACCATAACAAGACGGCGAGCTTCAACACTCGTAGAC
CGAAGAAGGAGGTCATCCACTTCCGAAAAAACGCGAAACGCCTTCGGCAC
GGCGGCAGGCTAGACGAGTCGGCGGCATGGGAAGAGAAAGCAGCCGAGCT
GGATGCAGACCACTTGGACAAATGGCGAGAAGAAGTCGCCGCAAGCCTGA
CGGCTAGCGCGTGGGGGGGTAGCAGCTCTGCTCTGGATCAAGCATGGGAA
GAGAAAGCAGCCGAGCTGGATGCAGACCACTTGGACAAATGGCGAGAAGA
AGTCGCCGCAAGCCTGACGGCTAGCGCGTGGGGGGGTAGCAGCTCTGCTC
TGGATCAACTCGCCTCTCAGCACCAGCGCGAGATAACCCGGATGGAGACT
GCGCAGGCGAACGAGTGGACGCTCATGTTGCTTCGGCATCGAACCGCCCG
GAGAAACTGCCAGAATGCCATTATGCTCGCCTCTCAGCACCAGCGCGAGA
TAACCCGGATGGAGACTGCGCAGGCGAACGAGTGGACGCTCATGTTGCTT
CGGCATCGAACCGCCCGGAGAAACTGCCAGAATGCCATTATGCAGCTCCG
AAACGCTTGCAAGAAAAACGCCGAAGAAAGACACCGCAGAGAAATGGTCG
GAGAGCCGGATCAGACGTGCGGAAGGGAATCATCTCCTGGTGATCCTGAT
GAGGAGCAGCTCCGAAACGCTTGCAAGAAAAACGCCGAAGAAAGACACCG
CAGAGAAATGGTCGGAGAGCCGGATCAGACGTGCGGAAGGGAATCATCTC
CTGGTGATCCTGATGAGGAGAATATTTCGAGCATGCTCAGAGACGCCATA
GACGATGAGAACTTTGCCGACGGGGAGGTAGAGCAGGCGGGAAGAGCCGA
TTCCTGCGACCACGGTTCGGCGGCGAATCGTCCGCCCGTGCGACCCACCA
GCGCTCCGCCGGCTCGCGGTAGAAGACCGCAGCCTAGCAGTAATAGCGGC
AATCCACAGGCATCGATCACAGGGCCAGTTGCGATGACAGGTGGCGTTCG
TGGCGGTCGGGGTGGCGGTGGAGTCGCGGAAGTCGAAGGCGAGGACGAAG
ATGATGATTCTTTCGGCAAAGACTCCCATGATCTGCGAGGCTTCGACGAA
CTCGAGGGCGAGACAGCGGCGTCGTTCTCATACGAAGACTATCCCGTCGC
GGGCTCGCCGGGGGAGCCAGAGTGGACCCATAACCCGTGGTGCGGAACGA
ACAGCGGCGACACCCTCATCCTCGACAAGAACGAGGTCCGTGCCGGCGGC
AAGGGAACCCCAGGAGAAACGCAAGTTTCGGCGTCTTCATCCGTTGTGTC
ACCCACATCTAGTGCAGAGCACGTCGACGCCGCGCTGGTGGAGACTGCTG
TGGGAGTAGGACAGGAGCAAGGAGACTCAGCAGCGGTAGTATCGCCGCTC
AGCTCTGCAGCAAATGGAGAGGAAGATTCCTACTGTGGCGGCCGCGTCTC
CGGAAAGGAAACGCCGCCTCGGGTAAGCCGTGGTCCATCTTCACCGCGAA
CTGTTGCCGGGGGTAGAGAGCTAAAGAGGTATGATTGGGGAGGAGCGGAT
GCGGTACCGACGAAGCCGTCCCTCCTCGCGGCGAGTCGGATACCGACGGG
AAACCGCGCGGACAAGCAGAGATACAGGAACGCCAAGAGGAAAGATGCCA
CGAGGAAGAATATTTCGAGCATGCTCAGAGACGCCATAGACGATGAGAAC
TTTGCCGACGGGGAGGTAGAGCAGGCGGGAAGAGCCGATTCCTGCGACCA
CGGTTCGGCGGCGAATCGTCCGCCCGTGCGACCCACCAGCGCTCCGCCGG
CTCGCGGTAGAAGACCGCAGCCTAGCAGTAATAGCGGCAATCCACAGGCA
TCGATCACAGGGCCAGTTGCGATGACAGGTGGCGTTCGTGGCGGTCGGGG
TGGCGGTGGAGTCGCGGAAGTCGAAGGCGAGGACGAAGATGATGATTCTT
TCGGCAAAGACTCCCATGATCTGCGAGGCTTCGACGAACTCGAGGGCGAG
ACAGCGGCGTCGTTCTCATACGAAGACTATCCCGTCGCGGGCTCGCCGGG
GGAGCCAGAGTGGACCCATAACCCGTGGTGCGGAACGAACAGCGGCGACA
CCCTCATCCTCGACAAGAACGAGGTCCGTGCCGGCGGCAAGGGAACCCCA
GGAGAAACGCAAGTTTCGGCGTCTTCATCCGTTGTGTCACCCACATCTAG
TGCAGAGCACGTCGACGCCGCGCTGGTGGAGACTGCTGTGGGAGTAGGAC
AGGAGCAAGGAGACTCAGCAGCGGTAGTATCGCCGCTCAGCTCTGCAGCA
AATGGAGAGGAAGATTCCTACTGTGGCGGCCGCGTCTCCGGAAAGGAAAC
GCCGCCTCGGGTAAGCCGTGGTCCATCTTCACCGCGAACTGTTGCCGGGG
GTAGAGAGCTAAAGAGGTATGATTGGGGAGGAGCGGATGCGGTACCGACG
AAGCCGTCCCTCCTCGCGGCGAGTCGGATACCGACGGGAAACCGCGCGGA
CAAGCAGAGATACAGGAACGCCAAGAGGAAAGATGCCACGAGGAAGACCG
TCTCTTGGGGCGAGAATCTGGAGGTTCCACCAGATTCTGATTGCGACGAT
GACGATAAGGAAGACACCGGCGACACCGAAGACAGCGGCGGAGGAGACAA
CGTTCTTGACGATATTGCTGACGGTTTCGTTGAAGACGATTTCCTCAACG
CCGACGACGAGAACGATGAACGACACAGACATCGCCACCCGACAAGCGTC
ATTGATGCTACCGTCTCTTGGGGCGAGAATCTGGAGGTTCCACCAGATTC
TGATTGCGACGATGACGATAAGGAAGACACCGGCGACACCGAAGACAGCG
GCGGAGGAGACAACGTTCTTGACGATATTGCTGACGGTTTCGTTGAAGAC
GATTTCCTCAACGCCGACGACGAGAACGATGAACGACACAGACATCGCCA
CCCGACAAGCGTCATTGATGCT
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