mRNA_H-canaliculatus_F_contig13929.3121.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13929.3121.1
Unique NamemRNA_H-canaliculatus_F_contig13929.3121.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13929.3121.1 vs. uniprot
Match: D7FYF7_ECTSI (DRP, dynamin-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF7_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 4.210e-106
Identity = 175/209 (83.73%), Postives = 184/209 (88.04%), Query Frame = 1
Query:    4 IDQVITNRLGGKLGALEQLRTLLQGNEEVSIPGVVVAGAQSAGKSSVLEALGGFKLPRGQNITTRCPLVLSLVAVPGAEPRAVIGGGADLSASGKEVDVDAISDGIKELTTELAGDGAAISAKPIYLKIIRPSGPTLTLIDLPGITHNSADGDQDIHAETVNLVKQYIENENMVILVVIPAMDDFANAEAVALAKKYDPDGRRTLGVVT 630
            ID  I NRL G+LGALEQLR LLQ NEEV IPGVVVAGAQSAGKSSVLEALGG KLPRGQNITTR PLVLSLVAVPGAEP AVIGG ADLS  GK + +D IS  I+ LT ELAGDG A+SAKPIYLKIIRPSGPTLTLIDLP ITHNS DG QDIH ETVNLVK++IEN+NMVILVVIPAMDDFANAEA+ALAKKYDPDGRRTLGVVT
Sbjct:    7 IDNEIENRLSGELGALEQLRALLQNNEEVKIPGVVVAGAQSAGKSSVLEALGGMKLPRGQNITTRVPLVLSLVAVPGAEPHAVIGGQADLS-KGKIIGIDEISTDIERLTNELAGDGTAVSAKPIYLKIIRPSGPTLTLIDLPDITHNSPDGTQDIHTETVNLVKKFIENDNMVILVVIPAMDDFANAEAIALAKKYDPDGRRTLGVVT 214          
BLAST of mRNA_H-canaliculatus_F_contig13929.3121.1 vs. uniprot
Match: A0A813LGD8_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LGD8_POLGL)

HSP 1 Score: 172 bits (437), Expect = 2.840e-46
Identity = 100/203 (49.26%), Postives = 136/203 (67.00%), Query Frame = 1
Query:   28 LGGKLGALEQLRTLLQGNEEVSIPGVVVAGAQSAGKSSVLEALGGFKLPRGQNITTRCPLVLSLVAVPGA-EPRAVIGGGADLSASGKE-VDVDAISDGIKELTTELAGDGAAISAKPIYLKIIRPSGPTLTLIDLPGITHNSADGDQDIHAETVNLVKQYIENENMVILVVIPAMDDFANAEAVALAKKYDPDGRRTLGVVT 630
            L  KLG LE++R + Q   ++++PGVVV G QSAGKSS+LE + G + PR QN  TR P +L+++  P   EP A +    D S  G E   V  + + I+ LT + A     IS K +Y++++R  GP L+LIDLPG+THN AD   DIH  TV+LV++Y+ +E +VIL VIPAM DF NAE + LA+KYDP+G+RTLGVVT
Sbjct:  121 LSKKLGLLERVRHVCQA-VQIALPGVVVVGEQSAGKSSLLENISGIQFPRAQNTCTRMPCILTMLTDPSILEPYAKVS--MDSSFEGAEQCAVGEVEEKIRALTAQHATGDTFISRKALYVRVVRKDGPQLSLIDLPGVTHN-ADKMADIHEVTVSLVEEYVRHEEVVILCVIPAMSDFGNAEVIKLARKYDPEGKRTLGVVT 319          
BLAST of mRNA_H-canaliculatus_F_contig13929.3121.1 vs. uniprot
Match: A0A812V0V8_9DINO (DRP4C protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812V0V8_9DINO)

HSP 1 Score: 165 bits (418), Expect = 7.530e-46
Identity = 95/198 (47.98%), Postives = 126/198 (63.64%), Query Frame = 1
Query:   37 KLGALEQLRTLLQGNEEVSIPGVVVAGAQSAGKSSVLEALGGFKLPRGQNITTRCPLVLSLVAVPGAEPRAVIGGGADLSASGKEVDVDAISDGIKELTTELAGDGAAISAKPIYLKIIRPSGPTLTLIDLPGITHNSADGDQDIHAETVNLVKQYIENENMVILVVIPAMDDFANAEAVALAKKYDPDGRRTLGVVT 630
            KLG +E +R + Q   ++ +PGVVV G QSAGKSS+LE + G + PR QN  TR P VL+++  P       +          K   V  +   IK+LT +     A IS + +Y++++R  GP L+LIDLPG+THN A+   +IH  TV+LVK+YIE E MVIL VIPAM DF NAE V LA++YDP+G RTLGVVT
Sbjct:   27 KLGLMESVRHVCQA-VQIPLPGVVVVGEQSAGKSSLLENISGIQFPRAQNTCTRMPCVLTMLTDPTVNESFALVSMDSSFTDAKRCAVADVEGRIKQLTDQHTTGAAFISREALYIRVVRRDGPQLSLIDLPGVTHN-AEKMSNIHEVTVSLVKEYIEPEEMVILCVIPAMSDFGNAEVVKLAREYDPEGIRTLGVVT 222          
BLAST of mRNA_H-canaliculatus_F_contig13929.3121.1 vs. uniprot
Match: A0A8J2ELG6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2ELG6_9DINO)

HSP 1 Score: 156 bits (395), Expect = 6.940e-45
Identity = 89/181 (49.17%), Postives = 118/181 (65.19%), Query Frame = 1
Query:   88 VSIPGVVVAGAQSAGKSSVLEALGGFKLPRGQNITTRCPLVLSLVAVPGAEPRAVIGGGADLSASGKEVDVDAISDGIKELTTELAGDGAAISAKPIYLKIIRPSGPTLTLIDLPGITHNSADGDQDIHAETVNLVKQYIENENMVILVVIPAMDDFANAEAVALAKKYDPDGRRTLGVVT 630
            + +PGVVV G QSAGKSSVLEA+ G   PRG+N  TR P +L +    G  P    G  +DL  +   + +  I   I+ LT + AG G++I A PI++K+++ SGPTLTLIDLPGITH   +   DIH   V L++ YI NE MVIL V+PA+ DF N EA+ LAK+ D +G RT+GVV+
Sbjct:    1 IEVPGVVVIGDQSAGKSSVLEAISGINFPRGENTCTRRPAILRMETRCGNAP----GEASDLH-NAVRIPLTEIGGEIQRLTRDKAGPGSSIIADPIHIKVVQDSGPTLTLIDLPGITHVH-ESQSDIHDVIVGLLRTYIANEQMVILAVVPAVSDFGNCEALKLAKEVDAEGERTVGVVS 175          
BLAST of mRNA_H-canaliculatus_F_contig13929.3121.1 vs. uniprot
Match: A0A812KZ97_9DINO (DRP4C protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KZ97_9DINO)

HSP 1 Score: 163 bits (413), Expect = 7.270e-43
Identity = 95/198 (47.98%), Postives = 125/198 (63.13%), Query Frame = 1
Query:   37 KLGALEQLRTLLQGNEEVSIPGVVVAGAQSAGKSSVLEALGGFKLPRGQNITTRCPLVLSLVAVPGAEPRAVIGGGADLSASGKEVDVDAISDGIKELTTELAGDGAAISAKPIYLKIIRPSGPTLTLIDLPGITHNSADGDQDIHAETVNLVKQYIENENMVILVVIPAMDDFANAEAVALAKKYDPDGRRTLGVVT 630
            KLG  E +R + Q   ++ +PGVVV G QSAGKSS+LE + G + PR QN  TR P +L+++  P       +          ++  V  +   IK LT   A   A IS + +Y++++R  GP L+LIDLPG+THN A+   +IH  TV+LVK+YIE E MVIL VIPAM DF NAE V LA++YDPDG RTLGVVT
Sbjct:  347 KLGLFESVRHVCQA-VQIPLPGVVVVGEQSAGKSSLLENISGIQFPRAQNTCTRMPCILTMLTDPTVSESYALVSMDSSFGDAQQCAVPDVEGQIKRLTEMHATGEAFISRQALYVRVVRRDGPQLSLIDLPGVTHN-AEKMSNIHEVTVDLVKEYIEPEEMVILCVIPAMSDFGNAEVVKLAREYDPDGIRTLGVVT 542          
BLAST of mRNA_H-canaliculatus_F_contig13929.3121.1 vs. uniprot
Match: A0A812NNR0_9DINO (DRP4C protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812NNR0_9DINO)

HSP 1 Score: 163 bits (412), Expect = 7.390e-43
Identity = 97/202 (48.02%), Postives = 132/202 (65.35%), Query Frame = 1
Query:   28 LGGKLGALEQLRTLLQGNEEVSIPGVVVAGAQSAGKSSVLEALGGFKLPRGQNITTRCPLVLSLVAVPGAE-PRAVIGGGADLSASGKEVDVDAISDGIKELTTELAGDGAAISAKPIYLKIIRPSGPTLTLIDLPGITHNSADGDQDIHAETVNLVKQYIENENMVILVVIPAMDDFANAEAVALAKKYDPDGRRTLGVVT 630
            L  KLG  E++R +     E+ +PGVVV G QSAGKSS+LE++ G + PR QN  TR P VL+++  P  + P A++        +G    V  +   IK+LT + A     IS + ++++++R  GP L+LIDLPG+THN A+  ++IH  TV LV++YI+ + MVIL VIPAM DF NAE V LAKKYDPDG RTLGVVT
Sbjct:   16 LSKKLGLFERVRHVCNA-VEIPLPGVVVVGEQSAGKSSLLESISGIQFPRSQNTCTRMPCVLTMLTDPATDDPYALVSMDPSFEDAGP-CPVMQVEGKIKQLTEKHATGDDFISKQALFVRVVRKEGPQLSLIDLPGVTHN-AECMENIHEVTVALVEEYIKPDEMVILCVIPAMSDFGNAEVVKLAKKYDPDGIRTLGVVT 214          
BLAST of mRNA_H-canaliculatus_F_contig13929.3121.1 vs. uniprot
Match: A0A812KI37_SYMPI (DRP4C protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812KI37_SYMPI)

HSP 1 Score: 159 bits (403), Expect = 1.210e-41
Identity = 99/208 (47.60%), Postives = 137/208 (65.87%), Query Frame = 1
Query:   37 KLGALEQLRTLLQGNEEVSIPGVVVAGAQSAGKSSVLEALGGFKLPRGQNITTRCPLVLSLVAVPGA-EPRAVIGGGADLSASGKEVDVDAISD---GIKELTTELAGDGAAISAKPIYLKIIRPSGPTLTLIDLP------GITHNSADGDQDIHAETVNLVKQYIENENMVILVVIPAMDDFANAEAVALAKKYDPDGRRTLGVVT 630
            KLG  E +R + Q   ++ +PGVVV G QSAGKSS+LE + G + PR QN  TR P +L+++  P   EP A++     +++S ++ +  A++D    IK+LT + A   A IS+K +Y++++R  GP L+LIDL       G+THN A+   +IH  TV+LVKQYIE E  VIL VIPAM DF NAE V LA+++DPDG RTLGVVT
Sbjct:   24 KLGLFESVRHVCQA-VQIPLPGVVVVGEQSAGKSSLLENISGIQFPRAQNTCTRMPCILTMLTDPTINEPYALV----SMNSSFEDAEQCAVADVEGHIKQLTEKHATGNAFISSKAMYVRVVRHDGPQLSLIDLQLALIWLGVTHN-AEKMSNIHEVTVSLVKQYIEPEETVILCVIPAMSDFGNAEVVKLAREFDPDGVRTLGVVT 225          
BLAST of mRNA_H-canaliculatus_F_contig13929.3121.1 vs. uniprot
Match: A0A815G6I8_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815G6I8_9BILA)

HSP 1 Score: 156 bits (395), Expect = 8.850e-41
Identity = 93/200 (46.50%), Postives = 130/200 (65.00%), Query Frame = 1
Query:   37 KLGALEQLRTLLQGNEEVSIPGVVVAGAQSAGKSSVLEALGGFKLPRGQNITTRCPLVLSLV-AVPGAEPRAVIGGGADLSASGKEVDVDAISDGIKELTTELAGDGAAISAKPIYLKIIRPSGPTLTLIDLPGITHNSADGD-QDIHAETVNLVKQYIENENMVILVVIPAMDDFANAEAVALAKKYDPDGRRTLGVVT 630
            +L AL+ +R +L   E++++P +VVAG QS GKSSVLEAL G +LPR QNI TRCPL L L  ++  AE   +   G +     K  D+D IS  +K LT  LAGDG  +S+ PIYL + + + P LTLIDLPGIT N   G  +DI+ + + L+ +YI+ E  ++L VIPA  DF  +E+V ++K YDP+G+R L  V+
Sbjct:   37 RLDALDLMREILN-EEKINLPEIVVAGDQSVGKSSVLEALSGIQLPRAQNICTRCPLELRLKNSMNDAEYATIRCKGEEEE---KITDLDDISQYVKRLTQTLAGDGVNVSSDPIYLTVYKQNIPDLTLIDLPGITRNPLPGQSKDIYKQIITLIDKYIQPETAIVLHVIPASVDFTTSESVKISKNYDPEGKRQLIAVS 232          
BLAST of mRNA_H-canaliculatus_F_contig13929.3121.1 vs. uniprot
Match: A0A812N278_9DINO (DRP4C protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812N278_9DINO)

HSP 1 Score: 156 bits (395), Expect = 1.830e-40
Identity = 94/204 (46.08%), Postives = 126/204 (61.76%), Query Frame = 1
Query:   19 TNRLGGKLGALEQLRTLLQGNEEVSIPGVVVAGAQSAGKSSVLEALGGFKLPRGQNITTRCPLVLSLVAVPGAEPRAVIGGGADLSASGKEVDVDAISDGIKELTTELAGDGAAISAKPIYLKIIRPSGPTLTLIDLPGITHNSADGDQDIHAETVNLVKQYIENENMVILVVIPAMDDFANAEAVALAKKYDPDGRRTLGVVT 630
            T  +  KLG +E +R + Q   ++ +PGVVV G QSAGKSS+LE + G + PR QN  TR P +L+++  P       +          K   V  +   IKELT + A   A IS + +Y++++R  GP L+LI   G+THN A+   +IH  TV+LVK+YIE E MVIL VIPAM DF NAE V LA++YDP+G RTLGVVT
Sbjct:   10 TAEVSKKLGLMESVRHVCQA-VQIPLPGVVVVGEQSAGKSSLLENISGIQFPRAQNTCTRMPCILTMLTDPTVNESFALVSMDSSFTDAKRCAVADVEGQIKELTDQHATGAAFISRQALYIRVVRRDGPQLSLI---GVTHN-AEKMSNIHEVTVSLVKEYIEPEEMVILCVIPAMSDFGNAEVVKLAREYDPEGIRTLGVVT 208          
BLAST of mRNA_H-canaliculatus_F_contig13929.3121.1 vs. uniprot
Match: A0A812J865_9DINO (DRP4C protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812J865_9DINO)

HSP 1 Score: 155 bits (391), Expect = 3.090e-40
Identity = 89/178 (50.00%), Postives = 113/178 (63.48%), Query Frame = 1
Query:   97 PGVVVAGAQSAGKSSVLEALGGFKLPRGQNITTRCPLVLSLVAVPGAEPRAVIGGGADLSASGKEVDVDAISDGIKELTTELAGDGAAISAKPIYLKIIRPSGPTLTLIDLPGITHNSADGDQDIHAETVNLVKQYIENENMVILVVIPAMDDFANAEAVALAKKYDPDGRRTLGVVT 630
            PGVVV G QSAGKSS+LE + G + PR QN  TR P VL+++  P       +          K   V  +   IKELT +     A IS + +Y++++R  G  L+LIDLPG+THN A+   +IH  TV+LVK+YIE E MVIL VIPAM DF NAE V LA++YDP+G RTLGVVT
Sbjct:   55 PGVVVVGEQSAGKSSLLENISGIQFPRAQNTCTRMPCVLTMLTDPTVNESFALVSMDSSFTDAKRCAVADVEGQIKELTDQHTTGAAFISTEALYIRVVRRDGLQLSLIDLPGVTHN-AEKMSNIHEVTVSLVKEYIEPEEMVILCVIPAMSDFGNAEVVKLAREYDPEGIRTLGVVT 231          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13929.3121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYF7_ECTSI4.210e-10683.73DRP, dynamin-related protein n=1 Tax=Ectocarpus si... [more]
A0A813LGD8_POLGL2.840e-4649.26Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A812V0V8_9DINO7.530e-4647.98DRP4C protein n=1 Tax=Symbiodinium necroappetens T... [more]
A0A8J2ELG6_9DINO6.940e-4549.17Hypothetical protein (Fragment) n=1 Tax=Amoebophry... [more]
A0A812KZ97_9DINO7.270e-4347.98DRP4C protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A812NNR0_9DINO7.390e-4348.02DRP4C protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A812KI37_SYMPI1.210e-4147.60DRP4C protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A815G6I8_9BILA8.850e-4146.50Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A812N278_9DINO1.830e-4046.08DRP4C protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A812J865_9DINO3.090e-4050.00DRP4C protein n=3 Tax=Symbiodinium TaxID=2949 RepI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13929contigH-canaliculatus_F_contig13929:2089..2903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score330.5
Seed ortholog evalue5.8e-88
Seed eggNOG ortholog2880.D7FYF7
KEGG koko:K14754,ko:K17065
KEGG Pathwayko04139,ko04214,ko04217,ko04621,ko04668,ko05162,ko05164,ko05165,map04139,map04214,map04217,map04621,map04668,map05162,map05164,map05165
GOsGO:0000266,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007005,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0044424,GO:0044464,GO:0048285,GO:0071840
EggNOG free text desc.mitochondrial fission
EggNOG OGsCOG0699@1,KOG0446@2759
EC3.6.5.5
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size630
Cds size630
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.2631302-CDS-H-canaliculatus_F_contig13929:2088..26101622929138.2631302-CDS-H-canaliculatus_F_contig13929:2088..2610Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13929 2089..2610 +
1696845691.8249004-CDS-H-canaliculatus_F_contig13929:2088..26101696845691.8249004-CDS-H-canaliculatus_F_contig13929:2088..2610Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13929 2089..2610 +
1622929138.2787266-CDS-H-canaliculatus_F_contig13929:2795..29031622929138.2787266-CDS-H-canaliculatus_F_contig13929:2795..2903Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13929 2796..2903 +
1696845691.8368044-CDS-H-canaliculatus_F_contig13929:2795..29031696845691.8368044-CDS-H-canaliculatus_F_contig13929:2795..2903Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13929 2796..2903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13929.3121.1prot_H-canaliculatus_F_contig13929.3121.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13929 2089..2903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13929.3121.1

>prot_H-canaliculatus_F_contig13929.3121.1 ID=prot_H-canaliculatus_F_contig13929.3121.1|Name=mRNA_H-canaliculatus_F_contig13929.3121.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=210bp
MIDQVITNRLGGKLGALEQLRTLLQGNEEVSIPGVVVAGAQSAGKSSVLE
ALGGFKLPRGQNITTRCPLVLSLVAVPGAEPRAVIGGGADLSASGKEVDV
DAISDGIKELTTELAGDGAAISAKPIYLKIIRPSGPTLTLIDLPGITHNS
ADGDQDIHAETVNLVKQYIENENMVILVVIPAMDDFANAEAVALAKKYDP
DGRRTLGVVT
back to top

mRNA from alignment at H-canaliculatus_F_contig13929:2089..2903+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13929.3121.1 ID=mRNA_H-canaliculatus_F_contig13929.3121.1|Name=mRNA_H-canaliculatus_F_contig13929.3121.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=815bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13929:2089..2903+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATCGATCAAGTGATCACGAACCGCCTCGGTGGAAAACTCGGGGCTCT TGAGCAGCTTCGGACGCTCCTGCAAGGCAATGAAGAGGTTAGCATCCCGG GCGTCGTCGTCGCCGGGGCGCAGAGTGCAGGCAAGTCCTCCGTCCTCGAA GCCCTCGGGGGGTTCAAGCTGCCTCGTGGGCAGAATATCACCACTCGCTG TCCGCTGGTGCTTAGTCTGGTGGCTGTTCCGGGGGCTGAACCCCGGGCGG TCATTGGCGGTGGAGCTGATCTGTCAGCGAGCGGGAAAGAGGTCGATGTT GATGCCATTTCTGACGGCATCAAGGAGCTCACCACGGAACTGGCTGGTGA CGGCGCCGCAATCAGCGCCAAGCCCATCTACCTGAAGATCATCCGTCCGT CTGGTCCGACGCTGACGCTCATCGATCTGCCGGGCATCACCCACAATTCG GCGGATGGCGACCAGGACATCCACGCGGAGACGGTGAACCTCGTGAAGCA GTACATCGAGAACGAGAACATGGTAAGCTTTTCCTTGTCTTCTTGCGTGG CCCTGCACGGCCTGCACGGCCCTTCATACAATTGAACTTCCTCCGCTGCA GTTGATTGGCAAAGCATCCCCGTTTCTGACGGTTGTCCCTGCCCGCCATA CCTGGTAGTACTGGATCCTTACACTGCGTGCCTGAAACCATCCATAATGT GATATAGGTGATCCTCGTGGTCATCCCGGCCATGGACGACTTCGCCAACG CTGAGGCCGTGGCTCTCGCCAAGAAGTACGACCCAGACGGCAGGCGCACC CTTGGTGTCGTCACC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13929:2089..2903+

>mRNA_H-canaliculatus_F_contig13929.3121.1 ID=mRNA_H-canaliculatus_F_contig13929.3121.1|Name=mRNA_H-canaliculatus_F_contig13929.3121.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1260bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13929:2089..2903+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATCGATCAAGTGATCACGAACCGCCTCGGTGGAAAACTCGGGGCTCT
TGAGCAGCTTCGGACGCTCCTGCAAGGCAATGAAGAGGTTAGCATCCCGG
GCGTCGTCGTCGCCGGGGCGCAGAGTGCAGGCAAGTCCTCCGTCCTCGAA
GCCCTCGGGGGGTTCAAGCTGCCTCGTGGGCAGAATATCACCACTCGCTG
TCCGCTGGTGCTTAGTCTGGTGGCTGTTCCGGGGGCTGAACCCCGGGCGG
TCATTGGCGGTGGAGCTGATCTGTCAGCGAGCGGGAAAGAGGTCGATGTT
GATGCCATTTCTGACGGCATCAAGGAGCTCACCACGGAACTGGCTGGTGA
CGGCGCCGCAATCAGCGCCAAGCCCATCTACCTGAAGATCATCCGTCCGT
CTGGTCCGACGCTGACGCTCATCGATCTGCCGGGCATCACCCACAATTCG
GCGGATGGCGACCAGGACATCCACGCGGAGACGGTGAACCTCGTGAAGCA
GTACATCGAGAACGAGAACATGATGATCGATCAAGTGATCACGAACCGCC
TCGGTGGAAAACTCGGGGCTCTTGAGCAGCTTCGGACGCTCCTGCAAGGC
AATGAAGAGGTTAGCATCCCGGGCGTCGTCGTCGCCGGGGCGCAGAGTGC
AGGCAAGTCCTCCGTCCTCGAAGCCCTCGGGGGGTTCAAGCTGCCTCGTG
GGCAGAATATCACCACTCGCTGTCCGCTGGTGCTTAGTCTGGTGGCTGTT
CCGGGGGCTGAACCCCGGGCGGTCATTGGCGGTGGAGCTGATCTGTCAGC
GAGCGGGAAAGAGGTCGATGTTGATGCCATTTCTGACGGCATCAAGGAGC
TCACCACGGAACTGGCTGGTGACGGCGCCGCAATCAGCGCCAAGCCCATC
TACCTGAAGATCATCCGTCCGTCTGGTCCGACGCTGACGCTCATCGATCT
GCCGGGCATCACCCACAATTCGGCGGATGGCGACCAGGACATCCACGCGG
AGACGGTGAACCTCGTGAAGCAGTACATCGAGAACGAGAACATGGTGATC
CTCGTGGTCATCCCGGCCATGGACGACTTCGCCAACGCTGAGGCCGTGGC
TCTCGCCAAGAAGTACGACCCAGACGGCAGGCGCACCCTTGGTGTCGTCA
CCGTGATCCTCGTGGTCATCCCGGCCATGGACGACTTCGCCAACGCTGAG
GCCGTGGCTCTCGCCAAGAAGTACGACCCAGACGGCAGGCGCACCCTTGG
TGTCGTCACC
back to top