mRNA_H-canaliculatus_F_contig13924.3118.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13924.3118.1
Unique NamemRNA_H-canaliculatus_F_contig13924.3118.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13924.3118.1 vs. uniprot
Match: A0A6H5K9W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W9_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.230e-5
Identity = 36/130 (27.69%), Postives = 61/130 (46.92%), Query Frame = 1 
Query:  184 DDEVIVTRTAMPAPEPFSPAPMRTDNVHLRNAMAAEHWKSWRSAPDVTVMLWVLTTVKPAAHTLKEGVLRSVLQDKAFVNANVTNQLNNMCDLRVRDFSPDCDDPGAGDIPLPDRLDIMIDAIMTVAARG 573
            + EV+++  A P     +       +  ++     E  ++WR+  + T   W LT  +P    +    +++ L D   V+  V   L +     +  F+   D PGAG IPL +RLD+ I AIM +A+RG
Sbjct:  123 EPEVVISNMAPPPRTRTAATSAAALSPQIQQLKIKEDLRAWRNPANAT--RWFLTGERPVGAAMSLNSMQASLHDVIGVSPAVFATLTDFAAFDIHKFAGPDDAPGAGGIPLAERLDLCIQAIMKLASRG 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13924.3118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9W9_9PHAE1.230e-527.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13924contigH-canaliculatus_F_contig13924:3..1012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1011
Cds size1008
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.0974526-CDS-H-canaliculatus_F_contig13924:2..10101622929138.0974526-CDS-H-canaliculatus_F_contig13924:2..1010Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13924 3..1010 +
1696845691.7579763-CDS-H-canaliculatus_F_contig13924:2..10101696845691.7579763-CDS-H-canaliculatus_F_contig13924:2..1010Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13924 3..1010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13924.3118.1prot_H-canaliculatus_F_contig13924.3118.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13924 3..1010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13924.3118.1

>prot_H-canaliculatus_F_contig13924.3118.1 ID=prot_H-canaliculatus_F_contig13924.3118.1|Name=mRNA_H-canaliculatus_F_contig13924.3118.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=336bp
NLKADQERLRADQERGAGILQQLELQANDFAATTTAVPADAHGGRQGSGE
TAASGVRLSHPDDEVIVTRTAMPAPEPFSPAPMRTDNVHLRNAMAAEHWK
SWRSAPDVTVMLWVLTTVKPAAHTLKEGVLRSVLQDKAFVNANVTNQLNN
MCDLRVRDFSPDCDDPGAGDIPLPDRLDIMIDAIMTVAARGVAVEEGTFR
LEILRTGLRRGHAMVRQHCYECRSLMMVPANYHMLAGIIDKDVGRWIAAW
LGEATAFKALYNEVPAFEHFPGVTTPTWSSLSNYINAGGLRNSPHQPHSA
GRGYSRATPGGSASPRAGRSNYCWDFASAGGCSRTA
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mRNA from alignment at H-canaliculatus_F_contig13924:3..1012+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13924.3118.1 ID=mRNA_H-canaliculatus_F_contig13924.3118.1|Name=mRNA_H-canaliculatus_F_contig13924.3118.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1010bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13924:3..1012+ (Hapterophycus canaliculatus Oshoro5f female)
AATTTGAAGGCGGACCAAGAGCGCTTGCGGGCGGACCAGGAGCGCGGGGC
TGGTATCCTCCAGCAGCTCGAGCTGCAAGCCAACGACTTCGCGGCCACGA
CGACCGCCGTCCCAGCCGACGCGCATGGCGGCCGCCAGGGGAGCGGGGAG
ACGGCTGCATCCGGCGTGCGCCTCAGCCACCCTGACGACGAGGTGATTGT
GACCCGCACCGCTATGCCCGCGCCGGAGCCATTCTCGCCAGCGCCGATGC
GGACAGATAACGTTCACCTGCGGAACGCCATGGCCGCGGAGCACTGGAAA
TCGTGGCGCAGCGCGCCCGACGTTACCGTCATGCTGTGGGTGCTGACGAC
CGTCAAGCCGGCCGCCCACACCCTGAAGGAAGGGGTGTTGCGGTCCGTCC
TGCAGGACAAAGCTTTCGTCAACGCCAACGTGACCAACCAGCTCAACAAC
ATGTGCGACCTTCGCGTGCGGGATTTCTCCCCCGATTGCGACGACCCGGG
AGCGGGCGACATCCCTCTGCCGGACCGACTTGACATCATGATCGACGCCA
TCATGACGGTTGCGGCCAGGGGTGTAGCTGTGGAGGAGGGCACGTTCCGC
CTGGAGATCCTGAGAACTGGTCTTCGTCGGGGGCATGCCATGGTCCGGCA
ACACTGCTATGAGTGTCGCAGTCTGATGATGGTGCCGGCCAACTACCACA
TGCTGGCCGGCATTATCGACAAGGATGTGGGCAGGTGGATCGCGGCGTGG
CTTGGCGAGGCCACGGCTTTCAAAGCCTTGTACAACGAGGTACCCGCCTT
CGAGCACTTCCCCGGCGTCACCACTCCGACATGGTCCTCCCTGTCTAATT
ACATCAACGCGGGCGGTCTCCGGAACTCCCCCCACCAGCCGCATTCGGCC
GGGCGAGGGTATTCCCGTGCGACACCGGGGGGATCAGCATCGCCACGGGC
GGGGAGATCGAACTACTGCTGGGACTTCGCGTCGGCAGGGGGGTGCTCCC
GCACCGCGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13924:3..1012+

>mRNA_H-canaliculatus_F_contig13924.3118.1 ID=mRNA_H-canaliculatus_F_contig13924.3118.1|Name=mRNA_H-canaliculatus_F_contig13924.3118.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2016bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13924:3..1012+ (Hapterophycus canaliculatus Oshoro5f female)
AATTTGAAGGCGGACCAAGAGCGCTTGCGGGCGGACCAGGAGCGCGGGGC
TGGTATCCTCCAGCAGCTCGAGCTGCAAGCCAACGACTTCGCGGCCACGA
CGACCGCCGTCCCAGCCGACGCGCATGGCGGCCGCCAGGGGAGCGGGGAG
ACGGCTGCATCCGGCGTGCGCCTCAGCCACCCTGACGACGAGGTGATTGT
GACCCGCACCGCTATGCCCGCGCCGGAGCCATTCTCGCCAGCGCCGATGC
GGACAGATAACGTTCACCTGCGGAACGCCATGGCCGCGGAGCACTGGAAA
TCGTGGCGCAGCGCGCCCGACGTTACCGTCATGCTGTGGGTGCTGACGAC
CGTCAAGCCGGCCGCCCACACCCTGAAGGAAGGGGTGTTGCGGTCCGTCC
TGCAGGACAAAGCTTTCGTCAACGCCAACGTGACCAACCAGCTCAACAAC
ATGTGCGACCTTCGCGTGCGGGATTTCTCCCCCGATTGCGACGACCCGGG
AGCGGGCGACATCCCTCTGCCGGACCGACTTGACATCATGATCGACGCCA
TCATGACGGTTGCGGCCAGGGGTGTAGCTGTGGAGGAGGGCACGTTCCGC
CTGGAGATCCTGAGAACTGGTCTTCGTCGGGGGCATGCCATGGTCCGGCA
ACACTGCTATGAGTGTCGCAGTCTGATGATGGTGCCGGCCAACTACCACA
TGCTGGCCGGCATTATCGACAAGGATGTGGGCAGGTGGATCGCGGCGTGG
CTTGGCGAGGCCACGGCTTTCAAAGCCTTGTACAACGAGGTACCCGCCTT
CGAGCACTTCCCCGGCGTCACCACTCCGACATGGTCCTCCCTGTCTAATT
ACATCAACGCGGGCGGTCTCCGGAACTCCCCCCACCAGCCGCATTCGGCC
GGGCGAGGGTATTCCCGTGCGACACCGGGGGGATCAGCATCGCCACGGGC
GGGGAGATCGAACTACTGCTGGGACTTCGCGTCGGCAGGGGGGTGCTCCC
GCACCGCGAATTTGAAGGCGGACCAAGAGCGCTTGCGGGCGGACCAGGAG
CGCGGGGCTGGTATCCTCCAGCAGCTCGAGCTGCAAGCCAACGACTTCGC
GGCCACGACGACCGCCGTCCCAGCCGACGCGCATGGCGGCCGCCAGGGGA
GCGGGGAGACGGCTGCATCCGGCGTGCGCCTCAGCCACCCTGACGACGAG
GTGATTGTGACCCGCACCGCTATGCCCGCGCCGGAGCCATTCTCGCCAGC
GCCGATGCGGACAGATAACGTTCACCTGCGGAACGCCATGGCCGCGGAGC
ACTGGAAATCGTGGCGCAGCGCGCCCGACGTTACCGTCATGCTGTGGGTG
CTGACGACCGTCAAGCCGGCCGCCCACACCCTGAAGGAAGGGGTGTTGCG
GTCCGTCCTGCAGGACAAAGCTTTCGTCAACGCCAACGTGACCAACCAGC
TCAACAACATGTGCGACCTTCGCGTGCGGGATTTCTCCCCCGATTGCGAC
GACCCGGGAGCGGGCGACATCCCTCTGCCGGACCGACTTGACATCATGAT
CGACGCCATCATGACGGTTGCGGCCAGGGGTGTAGCTGTGGAGGAGGGCA
CGTTCCGCCTGGAGATCCTGAGAACTGGTCTTCGTCGGGGGCATGCCATG
GTCCGGCAACACTGCTATGAGTGTCGCAGTCTGATGATGGTGCCGGCCAA
CTACCACATGCTGGCCGGCATTATCGACAAGGATGTGGGCAGGTGGATCG
CGGCGTGGCTTGGCGAGGCCACGGCTTTCAAAGCCTTGTACAACGAGGTA
CCCGCCTTCGAGCACTTCCCCGGCGTCACCACTCCGACATGGTCCTCCCT
GTCTAATTACATCAACGCGGGCGGTCTCCGGAACTCCCCCCACCAGCCGC
ATTCGGCCGGGCGAGGGTATTCCCGTGCGACACCGGGGGGATCAGCATCG
CCACGGGCGGGGAGATCGAACTACTGCTGGGACTTCGCGTCGGCAGGGGG
GTGCTCCCGCACCGCG
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