mRNA_H-canaliculatus_F_contig1391.3109.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1391.3109.1
Unique NamemRNA_H-canaliculatus_F_contig1391.3109.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1391.3109.1 vs. uniprot
Match: D7G8P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P7_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 1.090e-94
Identity = 151/185 (81.62%), Postives = 167/185 (90.27%), Query Frame = 1 
Query:    1 MDDDLVLAALLTALEDLHNIRNEMHTCLKQARGCCGFLNMAKARRTMGRNSVSVLDTREEYSAEVTISIEAE--DGRLQGSKSMFSRNRVELPGSAVVMRDGSLRQRGGGAAHVEIEESLLQPDQEAPVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRILSLRKILE-KGQLQPD 546
            MD+D  L+ALLTAL+DLHNIRNEMHTCLKQ     GFLNMA+ARR+MGRNSVSVLDTREEY+AEVTI+IE +  +GRLQ S+SMFSRNRVE  GSAVV+RDGSLRQRGGG AHVEIEESLLQPDQ+APVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRI+ L+K+LE KGQ+  D
Sbjct:    1 MDEDAALSALLTALDDLHNIRNEMHTCLKQ-----GFLNMARARRSMGRNSVSVLDTREEYAAEVTIAIEEDTSEGRLQESRSMFSRNRVEPAGSAVVIRDGSLRQRGGGGAHVEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRIIHLQKMLEAKGQMPKD 180
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BLAST of mRNA_H-canaliculatus_F_contig1391.3109.1 vs. uniprot
Match: A0A835YMR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.700e-16
Identity = 63/186 (33.87%), Postives = 90/186 (48.39%), Query Frame = 1 
Query:   25 ALLTALEDLHNIRNEMHTCLKQARGCCGFLNMAKARRTMGRNS----VSVLDTREEYSAEVTISIEAEDGRLQGSKSMFSRNRVELPGSAVVMRDGSLRQRGGGAAHVEIEESLLQPDQEAPVRG--------------DSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRILSL-RKILE 525
            ALL A ++LHN + E+  CLKQ     GF NM KAR   G  +    ++VLDTREE+ A VT+ +  +D     ++ + +   ++LP      R G+          V    SL Q +                     DSM LF  LVPP LRK+K+NF+S +DY   A+ L  R+  L R +L+
Sbjct:   28 ALLEAADELHNAKAELSLCLKQ-----GFFNMTKARLAAGGGAHSAGITVLDTREEFHAAVTVELLDKDPDASPARELRA---LKLPAGHAFQRAGNDDAPHSSGGSVNGSSSLRQRNHAGSXXXXXXXXXXXXXAAGKDSMQLFGGLVPPALRKAKRNFSSALDYVFLAAELTQRVALLYRAVLQ 205
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BLAST of mRNA_H-canaliculatus_F_contig1391.3109.1 vs. uniprot
Match: A0A7S2BYK8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYK8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.460e-16
Identity = 62/179 (34.64%), Postives = 96/179 (53.63%), Query Frame = 1 
Query:   25 ALLTALEDLHNIRNEMHTCLKQARGCCGFLNMAKARRTMGRNSVSVLDTREEYSAEVTISIEAEDGRLQGSKSMFSRNRVELPGSAVVMRDGSLRQRGGGAAHVEIEESLLQ---PDQEAP---VRG----DSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRI-LSLRKILEK 528
            AL+   E +  +  E     K  R   GFLN+ KAR++MGRN++S L+ RE   A+V +     D   +    M      E PG AV  ++G++R+RG G     I+E  +    PD+ A    V+G    +++ LF  LVPPP+RK+K +F   V++ + A+N+A  I L+ R+I  K
Sbjct:   15 ALVALFEKVDGLYAEQQRIAKSMRK--GFLNITKARQSMGRNALSALNCRELVDAQVRV-----DATHEEDAGMLWERHRESPG-AVASQNGAVRRRGAGGLSGPIDEDTVSSHTPDEPAADDAVQGAAQKNTLMLFGGLVPPPMRKAKADFALAVEHCIAAANVAQSIALAEREIRAK 185
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BLAST of mRNA_H-canaliculatus_F_contig1391.3109.1 vs. uniprot
Match: A0A7S2H454_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H454_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.920e-14
Identity = 52/173 (30.06%), Postives = 91/173 (52.60%), Query Frame = 1 
Query:    4 DDDLVLAALLTALEDLHNIRNEMHTCLKQARGCCGFLNMAKARRTMGRNSVSVLDTREEYSAEVTISIEAEDGRLQGSKSMFSRNRVELPGSAVVMRDGSLRQRGGGAAHVEIEESLLQPDQEAPVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRILSLRKIL 522
            D D  L ++L+  ++ +  +  +   +++     GFLNMAKAR+++GR S++ LD RE   A+ TI    +   +    S    + +  P       + +LR+RG G  + +  E +    + A    D M LF  LVPPP+R++ + FT+ +++ V A+NLA +I+   K L
Sbjct:    4 DADSKLLSILSQTDEFYAEQQRIAKAIRK-----GFLNMAKARQSLGRGSLTALDCRENVCAQFTIDAHTDCDDIWRRHS----DTLNAP------EEKALRRRGAGG-NGKTNEDIQSVSEGAEDHNDPMLLFGGLVPPPMRRAGQEFTAAIEHIVTAANLAAKIIESEKEL 160
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BLAST of mRNA_H-canaliculatus_F_contig1391.3109.1 vs. uniprot
Match: A0A7S2S2U0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2U0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.540e-10
Identity = 45/138 (32.61%), Postives = 76/138 (55.07%), Query Frame = 1 
Query:  106 GFLNMAKARRTMGRNSVSVLDTREEYSAEVTISIEAEDGRLQGSKSMFSRNRVELPGSAVVMRDGS--LRQRGGGAAHVEIEESLLQPDQEAPVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRILSLR 513
            GFLN+ KAR++MGR +++ LD REE  A  ++  +++  ++    ++    R       V  R G+  LR+RG      +  E+    D+E   R D + LF  LVPP LR+++ +F   +D+ + A+N+ HR + LR
Sbjct:   42 GFLNVTKARQSMGRGALTALDCREEMVASFSLD-QSDVSQVDEQSALILWRRFRR----VASRSGAKTLRRRGSTPPSSDEPENTSVDDREE-AREDPVLLFGGLVPPTLRRAQADFQVALDFYISAANVIHRAMQLR 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1391.3109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8P7_ECTSI1.090e-9481.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YMR8_9STRA5.700e-1633.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2BYK8_9STRA9.460e-1634.64Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2H454_9STRA7.920e-1430.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2S2U0_9STRA2.540e-1032.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1391contigH-canaliculatus_F_contig1391:23284..25633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_002530.1
Exons4
Model size555
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1391.3109.1prot_H-canaliculatus_F_contig1391.3109.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1391 23284..25633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929136.6682868-CDS-H-canaliculatus_F_contig1391:23283..233811622929136.6682868-CDS-H-canaliculatus_F_contig1391:23283..23381Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1391 23284..23381 -
1696845691.1947455-CDS-H-canaliculatus_F_contig1391:23283..233811696845691.1947455-CDS-H-canaliculatus_F_contig1391:23283..23381Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1391 23284..23381 -
1622929136.6847818-CDS-H-canaliculatus_F_contig1391:23946..241971622929136.6847818-CDS-H-canaliculatus_F_contig1391:23946..24197Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1391 23947..24197 -
1696845691.2035406-CDS-H-canaliculatus_F_contig1391:23946..241971696845691.2035406-CDS-H-canaliculatus_F_contig1391:23946..24197Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1391 23947..24197 -
1622929136.701827-CDS-H-canaliculatus_F_contig1391:24337..244381622929136.701827-CDS-H-canaliculatus_F_contig1391:24337..24438Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1391 24338..24438 -
1696845691.2129729-CDS-H-canaliculatus_F_contig1391:24337..244381696845691.2129729-CDS-H-canaliculatus_F_contig1391:24337..24438Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1391 24338..24438 -
1622929136.7151563-CDS-H-canaliculatus_F_contig1391:25528..256331622929136.7151563-CDS-H-canaliculatus_F_contig1391:25528..25633Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1391 25529..25633 -
1696845691.2255328-CDS-H-canaliculatus_F_contig1391:25528..256331696845691.2255328-CDS-H-canaliculatus_F_contig1391:25528..25633Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1391 25529..25633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1391.3109.1

>prot_H-canaliculatus_F_contig1391.3109.1 ID=prot_H-canaliculatus_F_contig1391.3109.1|Name=mRNA_H-canaliculatus_F_contig1391.3109.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=185bp
MDDDLVLAALLTALEDLHNIRNEMHTCLKQARGCCGFLNMAKARRTMGRN
SVSVLDTREEYSAEVTISIEAEDGRLQGSKSMFSRNRVELPGSAVVMRDG
SLRQRGGGAAHVEIEESLLQPDQEAPVRGDSMSLFATLVPPPLRKSKKNF
TSVVDYAVEASNLAHRILSLRKILEKGQLQPDSS*
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mRNA from alignment at H-canaliculatus_F_contig1391:23284..25633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1391.3109.1 ID=mRNA_H-canaliculatus_F_contig1391.3109.1|Name=mRNA_H-canaliculatus_F_contig1391.3109.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2350bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1391:23284..25633- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGACGATCTGGTATTAGCAGCTCTGCTGACAGCGCTCGAGGACCT
TCACAACATCCGGAACGAGATGCACACATGCTTAAAACAGGCAAGAGGGT
GCTGCGTTCACTCGCCAATCCTCTTGATCCGGATTCTGTAAATTTCTGAC
CTTCACACCGCTTCTTATAGGAGCAGGAAGTTGAGAGAAAAGCTAAAGTT
TGCGAACTATTCTTCACACTTTTCTTCTGTACGCTCTTTGTGCGAGCGAA
AAGTTCGACGAAAAGTTTGCAAACTTTTCGTTTGGGAGATAATAGCTCGA
TCCGGAGCAAAAGTTTGCCAACTTTTCGTCGGGCTGGAGTGGCGAAGAAA
AGCTGCACGGCGGAAATTATACCGGTTCGGGAGCAGGTCGAAGTCGATGC
ACTATGCGCAAGTAGCGCAATGAACACCGCACGAGTAATTCAGGCTTGTT
TCACGCAATCCGATACACGACCACACGTCCAATCCCTACTTCGGCGCACC
CCGAAGACGGACATGAACAACAACAGCATCAATCGCGACACAGAGAACAT
CAAAAAGCAGTCATGAGAGGTTATTGTGGCAAGAGGAGCAGCTAAACAAC
AGCTGAACAGCAGTACAGTATAGCAGCAGCGGCGGCAGCAGCTGCTTCAG
TCATGATGGGGCTGATCCATGAAGAGGCTGTGATGCTACAGATTGCGCTC
TACACAAAGTGTGATTGGTTGATTGGATAGGCGCTTTGTTGGATTCCTCC
AGATTGAGCGCTATACTGCTGTGTGCGTTGTGCTCGGCACTTACTTGCGT
GCTATCAAGCGTTTTTGTGTCGGCTTCGTGTTCCAGCATTTGGCATCGCG
TGGGGGGTCACACGTGATTTATGTCATTTTGGAACAACACCACCCCCCAC
ATTCGACCAGTTCCGTCAACAAAACTTTCACTTTTCTTCCTTCGTCCCAT
AAGGAGCGTACACGAAAAGTTTGCAAAGCGAAAGTCCCCGACGAATAGTT
CAAAAAAAAACTTTAGCTTTTCTCTCAACTTCCTTCTCCCATAAGAAGCT
CAAAGGAGTACACGTTCAAAAAGGGAAATCGATCACAATCAACGACACAA
GTAAATCATTGTCTTCTTTCGCTCGAGACATTACATGCGCGAAATTTGAG
TCACCATTGCCCTCGCGGAAACATGCGATTGATCTGTTCTCACAGGGCTT
CTTGAATATGGCCAAGGCAAGGAGGACTATGGGTCGAAACTCCGTGAGTG
TACTGGATACAAGAGAGGAATACTCCGCTGAGGTAACGATTTCCATGTGA
GTGTTGCGACCCTCTGTGTTGTGATTACCACAAGAAAAAGCATGTTCCAG
CGAGTTCGAAAGTGCAGTCTCTCTTCACAACGGTAATGAGCTGTTTCTGC
TGTTCTTTCATTTACCATGTCGTGTCCCCCAAACAGAGAAGCCGAGGACG
GACGACTGCAGGGGTCTAAGAGTATGTTCTCGAGAAATAGAGTCGAGCTC
CCAGGGTCTGCAGTAGTTATGCGGGACGGAAGCCTGAGACAACGCGGGGG
AGGGGCGGCGCACGTCGAAATCGAAGAGTCTCTGTTGCAACCAGACCAAG
AGGCCCCTGTCCGAGGAGATTCGATGAGCTTGTTCGCAACACTGGTTCCG
CCGCCCTTGCGCAAATCGAAGAAGAATTTCACCTCTGGTAAGCCTTCCTC
TCGCGGGTATTTGCGCGATGTATGATGTGCAAGAGTAGACCAACAGAGAG
GGATAGGTGGAAGGGTTTCGGTGCATTTTCTGTGGAAAAGCGGCTAGAGC
AGTTGCGGTTTCCAAGATTGATCAGATGAAAATACTTTCAGAAACGATGC
TATCATGGTTAATTGTGGAAAGGCAAGGCAAGCCAAGGCCGACGAGACCG
AGGGGACCGACTGACCCCACATACATGCATCAACCCCACCACCACGCCAT
GAAAATAAGCTTCACGTACGAAGTATTCGAAGTTGCGTTTATCGTCTTCG
GCAAGTCGGAAGACACGACTCCCTTCACAAACCCGTTTGGGTTGTGAGCG
AGATGCCGCGATTTGTTCAAGAGATAAGGGAGTATGAACACTCCGAACTG
CAAACGTTAAACATGCCTTCGTCAGCTCGAAACTGTTCCCTCCTGAGTTT
CATTTGGGGGAGCAAAACTCCGGAAAGCTTTTGCACCGTTCGCTGCACTT
GACCAACGACACCATTCGTCCCCGCTGCTCCCATCGGTTAAACTTCACAC
AGTTGTAGACTACGCAGTGGAGGCGTCAAATCTTGCACATCGCATCCTCT
CTCTCCGGAAAATATTGGAGAAAGGACAGCTTCAGCCGGATTCAAGTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1391:23284..25633-

>mRNA_H-canaliculatus_F_contig1391.3109.1 ID=mRNA_H-canaliculatus_F_contig1391.3109.1|Name=mRNA_H-canaliculatus_F_contig1391.3109.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1110bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1391:23284..25633- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGACGATCTGGTATTAGCAGCTCTGCTGACAGCGCTCGAGGACCT
TCACAACATCCGGAACGAGATGCACACATGCTTAAAACAGGCAAGAGGGT
GCTGCATGGACGACGATCTGGTATTAGCAGCTCTGCTGACAGCGCTCGAG
GACCTTCACAACATCCGGAACGAGATGCACACATGCTTAAAACAGGCAAG
AGGGTGCTGCGGCTTCTTGAATATGGCCAAGGCAAGGAGGACTATGGGTC
GAAACTCCGTGAGTGTACTGGATACAAGAGAGGAATACTCCGCTGAGGTA
ACGATTTCCATGGCTTCTTGAATATGGCCAAGGCAAGGAGGACTATGGGT
CGAAACTCCGTGAGTGTACTGGATACAAGAGAGGAATACTCCGCTGAGGT
AACGATTTCCATAGAAGCCGAGGACGGACGACTGCAGGGGTCTAAGAGTA
TGTTCTCGAGAAATAGAGTCGAGCTCCCAGGGTCTGCAGTAGTTATGCGG
GACGGAAGCCTGAGACAACGCGGGGGAGGGGCGGCGCACGTCGAAATCGA
AGAGTCTCTGTTGCAACCAGACCAAGAGGCCCCTGTCCGAGGAGATTCGA
TGAGCTTGTTCGCAACACTGGTTCCGCCGCCCTTGCGCAAATCGAAGAAG
AATTTCACCTCTGAGAAGCCGAGGACGGACGACTGCAGGGGTCTAAGAGT
ATGTTCTCGAGAAATAGAGTCGAGCTCCCAGGGTCTGCAGTAGTTATGCG
GGACGGAAGCCTGAGACAACGCGGGGGAGGGGCGGCGCACGTCGAAATCG
AAGAGTCTCTGTTGCAACCAGACCAAGAGGCCCCTGTCCGAGGAGATTCG
ATGAGCTTGTTCGCAACACTGGTTCCGCCGCCCTTGCGCAAATCGAAGAA
GAATTTCACCTCTGTTGTAGACTACGCAGTGGAGGCGTCAAATCTTGCAC
ATCGCATCCTCTCTCTCCGGAAAATATTGGAGAAAGGACAGCTTCAGCCG
GATTCAAGTTGATTGTAGACTACGCAGTGGAGGCGTCAAATCTTGCACAT
CGCATCCTCTCTCTCCGGAAAATATTGGAGAAAGGACAGCTTCAGCCGGA
TTCAAGTTGA
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